Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2900 ATGATTGATCTTAATCTCAATCTCAACTCGGCTGATGCGACTCAGAATGAAGACTCTGTTCTGTTCTTTGAGAAGCTTCCTAAAAGCTCGGGGAATCAAATGGATGAATCAGGAACTTCCGATTCTTCGATTGTTAATGCTGATACCTCCAGCAATGGCGGTGACGACGATTCGTGCTCCACACGCGCCGGTGGCGAGCTCTTCACGTTCAACTTCGAGATAATGAAGGCTGGAATCGCGAACGACGAAATTGTCACGAAGGAGTTTTTTCCGATAGGTGGAGCGGTGAATGCTGATTTCGGAAATCTTCAGTGGCCTAACTCGGCCTCTTCTTCTCCATCCTCATCGCGTAAGAACTGGATCAACCTTGCGTTTGATCGAACCGGTTCAGCCGGGGAGGGGGGAATGGTTCAGCCGGTTCAGCCTCAGCCGGTGAAGAAGAGCCGGAGGGGACCGAGGTCTCGGAGCTCGCAGTACCGAGGTGTCACATTCTACCGGAGGACTGGCCGGTGGGAATCGCATATTTGGGACTGCGGGAAGCAAGTATATCTGGGTGGATTCGACACTGCACTCTCTGCAGCTAGAGCATATGATCGAGCTGCTATCAAGTTCAGAGGGGTCGACGCTGACATTAATTTCAATCTTATTGATTATGAGGAAGATCTGAAACAGTTGAAGAATTTAAGCAAGGAAGAATTTATTCACATTCTTCGTCGTCAGAGCACTGGTTTCTCAAGAGGGAGCTCGAAATATAGAGGGGTGACACTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAGCTCCTTGGGAAAAAGGCTTATGACAAGGCAGCAATCAATTGTAATGGGCGGGAGGCAGTAACCAACTTTGAGCCTAGCACATATGTTGGAGAGAAAGTTTCTGAGGGCAGCAGTGAAGGTGGTCCGATCATGCTTGATTTGAATTTAGGGATTTCACCCCCTTCCAACTTTGCAAAGGTCAATGATGGGCATTTGCGAATTCAACCTGTTCCTTGCTATCCTAATGATAGTAGTACAATGATGGAGAGCAATGCTGATGCAGCAGTTGGCGATCCATCTTTTAAAGGACTCGTAATGTCATCCGAGCATGCTCCCTTATGGAACGGCTTACAATCTAGCTTCTTTCCCAGTGCGGAAAGCATGACAGAGAAGAGACTTGCATTAGGTTCATCCCAAGGAATCCCTAAATGGGGATGGCAAATCCATGGCCCGGTCAATGCCACCCAAGTGCCACTGTTCTCTGCTGCAGCATCATCAGGATTCTCATTCTCGGCTACCCATTTCCCGGCTGCGATACCTCCACCGCACCAACCGGGCTCGATCGCCCATAATGTCCATTTCGCTTCTGCTCAAGCTTCACTCAACTCCCCTCAGTATCACCACCAGTTGAACCAACGACAGGCACCACCATAA 1437 49.27 MIDLNLNLNSADATQNEDSVLFFEKLPKSSGNQMDESGTSDSSIVNADTSSNGGDDDSCSTRAGGELFTFNFEIMKAGIANDEIVTKEFFPIGGAVNADFGNLQWPNSASSSPSSSRKNWINLAFDRTGSAGEGGMVQPVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTALSAARAYDRAAIKFRGVDADINFNLIDYEEDLKQLKNLSKEEFIHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKAYDKAAINCNGREAVTNFEPSTYVGEKVSEGSSEGGPIMLDLNLGISPPSNFAKVNDGHLRIQPVPCYPNDSSTMMESNADAAVGDPSFKGLVMSSEHAPLWNGLQSSFFPSAESMTEKRLALGSSQGIPKWGWQIHGPVNATQVPLFSAAASSGFSFSATHFPAAIPPPHQPGSIAHNVHFASAQASLNSPQYHHQLNQRQAPP 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39971405 39974548 + Sed0000924.1 Sed05g2900 715526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2900 478 SUPERFAMILY DNA-binding domain 157 214 IPR016177 GO:0003677(InterPro)
Sed05g2900 478 CDD AP2 249 294 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2900 478 MobiDBLite consensus disorder prediction 30 58 - -
Sed05g2900 478 SUPERFAMILY DNA-binding domain 249 293 IPR016177 GO:0003677(InterPro)
Sed05g2900 478 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 83 312 - -
Sed05g2900 478 CDD AP2 158 213 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2900 478 FunFam AP2-like ethylene-responsive transcription factor 157 216 - -
Sed05g2900 478 ProSiteProfiles AP2/ERF domain profile. 158 214 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2900 478 Pfam AP2 domain 158 206 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2900 478 Gene3D AP2/ERF domain 249 293 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2900 478 Gene3D AP2/ERF domain 157 215 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2900 478 SMART rav1_2 158 220 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2900 478 SMART rav1_2 250 298 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2900 478 MobiDBLite consensus disorder prediction 130 158 - -
Sed05g2900 478 MobiDBLite consensus disorder prediction 30 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1315 Sed-Chr4:27502844 Sed05g2900 Sed-Chr5:39971405 2.40E-96 dispersed
Sed04g2747 Sed-Chr4:39658370 Sed05g2900 Sed-Chr5:39971405 1.10E-63 dispersed
Sed05g2900 Sed-Chr5:39971405 Sed10g0651 Sed-Chr10:4456660 5.60E-77 dispersed
Sed02g0736 Sed-Chr2:45089942 Sed05g2900 Sed-Chr5:39971405 1.40E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38662 PF00847 AP2 6.20E-10 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2900 K09284 - csv:101222024 758.059