Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2905 ATGGGTTGCTTTCGATACGGCAAAAAAGAAAGGAAAAGATTTGAGAGCAATGGGATAAGACCGGCTTCTGCAGCTGTCCCAGAAACGGTCAAAGTAAAGGCGGATTTGAATGTAAAAACAGAGGAAGAAGTAAATGAGGTGGTCAGTAAAAATGACCAGCCGGCGTCAACAAATATAAACAATGAGGTTTCAAAGATAGAAACATTTACATTCCACGAGCTTTCAACAGCAACTAGAAATTTCAAGCCAGATTCCTTTCTAGGTGAAGGGGGATTTGGTAAAGTTTACAAGGGCAATTTGGGACGAATCAACGAGGTTGTAGCCATCAAGCAACTTGACCGCAATTCGCTTCAAGGTGTAAGAGAATTCGTGGTGGAAGTGATGACATTAAGTCTAGCCAATCACCCGAATCTCGTAAAATTGATAGGCTATTGTGCCGAGCGTGACCAAAGGCTCTTGGTTTACGAGTTCATGCCATTAGGATCATTGGACAAACATTTGCACGATCTTCCACAAGGCAAACAAGGGCTTGATTGGAATACAAGAATGAAGATAGCAGTGGGTGCAGCAAGGGGATTGGAGTATTTACATGAAAAAATGAAGCCTGCAGTTATTTATCGCGATCTAAAATGCTCGAACATTTTGCTCGATGAAGGGTATTCACCGAAGCTCTCAGATTTCGGTCTAGCCAAAGTAGGTCCGAGCGGAGATAAGACCCATGTTTCTACTAGAGTTATGGGAACACAAGGATATTGTGCACCGGATTATGCAATGACAGGGCAATTGACATTCAAATCTGACATCTATAGCTTTGGAGTTGTTCTCTTAGAGCTCATCACCGGAAGAAAAGCCATTGATCATAGAAGACCCTCAAAGGAGATGAGTTTGGTAACATGGGCAAAACCATTATTCAGAGATAGAAAAAAATTCTTGCAAATGGCGGATCCAAATCTAGAAGGTCGATATCCTACGAGAGGATTATATCAATCTCTTGCCATAGCAGCTATGTGTCTCCAAGAACAACCTGCTATGAGACCTGCAGTAACAGAAGTGGTCACCGCTCTAGATTTTCTTGCTTCTCAAAATTATACAAAAAAAGATAAATTAGTATAA 1113 41.33 MGCFRYGKKERKRFESNGIRPASAAVPETVKVKADLNVKTEEEVNEVVSKNDQPASTNINNEVSKIETFTFHELSTATRNFKPDSFLGEGGFGKVYKGNLGRINEVVAIKQLDRNSLQGVREFVVEVMTLSLANHPNLVKLIGYCAERDQRLLVYEFMPLGSLDKHLHDLPQGKQGLDWNTRMKIAVGAARGLEYLHEKMKPAVIYRDLKCSNILLDEGYSPKLSDFGLAKVGPSGDKTHVSTRVMGTQGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHRRPSKEMSLVTWAKPLFRDRKKFLQMADPNLEGRYPTRGLYQSLAIAAMCLQEQPAMRPAVTEVVTALDFLASQNYTKKDKLV 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40025222 40028636 + Sed0016863.1 Sed05g2905 715531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2905 370 PIRSF ILK 30 368 - -
Sed05g2905 370 SMART serkin_6 81 358 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2905 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2905 370 SUPERFAMILY Protein kinase-like (PK-like) 66 361 IPR011009 -
Sed05g2905 370 CDD STKc_IRAK 87 356 - -
Sed05g2905 370 FunFam probable serine/threonine-protein kinase RLCKVII 53 157 - -
Sed05g2905 370 PANTHER OS07G0668900 PROTEIN 42 366 - -
Sed05g2905 370 Pfam Protein kinase domain 84 352 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2905 370 Gene3D Phosphorylase Kinase; domain 1 50 157 - -
Sed05g2905 370 Gene3D Transferase(Phosphotransferase) domain 1 158 369 - -
Sed05g2905 370 FunFam Serine/threonine-protein kinase PBS1 158 370 - -
Sed05g2905 370 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524(InterPro)
Sed05g2905 370 ProSiteProfiles Protein kinase domain profile. 81 358 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2905 Sed-Chr5:40025222 Sed12g0854 Sed-Chr12:5311168 4.80E-129 dispersed
Sed13g1341 Sed-Chr13:18911607 Sed05g2905 Sed-Chr5:40025222 4.20E-66 dispersed
Sed05g2905 Sed-Chr5:40025222 Sed05g2906 Sed-Chr5:40025222 1.00E-171 tandem
Sed02g0724 Sed-Chr2:45055854 Sed05g2905 Sed-Chr5:40025222 9.80E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79248 PF00069 Pkinase 2.10E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2905 - - - 0.0