Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2908 ATGAAACAAAAAAAAAGAGACCAAATGGAACCGTTGGAAAAAGCACAGCCAAAATCCTCGCCTCTGGCGCCATTTCCTCGGGACATCCGAGGATCGCTCGAGGTTTTCAATCCCTCGGCCGGCTACACGTCTCGAGCAATCAACTCCATTTCCCGCCCAAACCCAACGTGGCCCAATTGGGCAGAGCCACGTAGCAGCGCGGACTCGGACTCGGCCAAACTCGGCGCCAAACAGACGAGTACTAAATCCGGCGAGGAAATCACGTCATGGATGGCCATCAAGGACTCGAACCCGTCGCCACAACCCAACTCGCCGCTCGCTCAGACAACAATCTCGGCGATCATGAGCGAGAAATCGGCGGCGAAGTCGGCGGACGAAGTGGGGTCTGCCGCCCTACGCGCCGCCGAGTGGGGGCTGGTGCTGAAAACCGACACGGAGACAGGGAAGCCGCAGGGCGTCGGAGTTCAAAGCTCCGGCGGCGAGGAGGCGAATAATAACAAACCGGAGAATTCAAGGCGGACTTCGAATAACTCGTTGCGGAGTTCGGGCGACATGTCGGACGACGGCGGAAGGGAAAGGGGGATTCCGAGAGTCTCTGAAGATTTGAAGGACGCTCTGTCGGCATTTCAACAGACATTTGTGGTTTCTGATGCTTCTAAACCTGATTTTCCGATTATGTACGCCAGTGCTGGATTCTTCAAAATGACTGGCTATACATCCAAGGAAGTTATCGGCAGAAATTGTCGATTTTTACAGGGTGCAGATACAGACCCAGAAGATGTGGCCAAGATCCGAGAAGCTTTACAAGCTGGGACAAGTTACTGTGGGAGGTTGTTGAATTACAAGAAAGATGGGACCCCTTTTTGGAATTTACTTACTATTTCACCTATCAAAGATGATGATGGCAAGGTTCTCAAATTTATTGGAATGCTAGTGGAGGTGAGTAAACACACAGAAGGTTTCAAAGATAAGATGGTCCGTCCCAATGGCTTGCCAGAATCCTTGATTCGTTATGATGCCCGTCAAAAAGACATGGCTACGAGTTCAGTAACAGAGCTTGTGCAGGCTGTGAAAAGGCCCCGATCCGTGAGTGAATCCAGGCCACGGGCTCTAAGTGAATCTATGAATCGGCCGTTGGTTAGAAACTCCGGTGGCGGGTTCGGCGGCGATGAGACCGAGGATAGAATTGATGGTGGAATGGTTAGGCGAAAGTCGGAAAGCGCAGCGCCTTCAACTGGACGGAAATTTCATGGACGAGGCACAAGGTCGATGCAGCGTATCAATGAGCTGCCGGAGAAGAAACCCAAGAAGTTTAGCCGTCGTTCGTTTATGGGGATTATGAGGAAAAGTCAATCAAATATTGAAAGCTTTGACATGGAAGATGGTTCCGACGACGATATTGAGACCGATGACGATGAGAGACCGGATAGTGTCGATGGCAAAGTAAGGCAGAGGGAAATGAGGAAAGGTATTGATTTAGCTACTACTCTCGAACGTATAGAGAAAAACTTCGTGATTACCGATCCTAGATTGCCCGACAATCCCATTATATTTGCTTCTGATAGCTTCTTGGAGCTAACAGAGTACAGTAGAGAAGAAATCTTGGGAAGAAATTGCAGATTTCTGCAAGGTCCTGAAACCGATCGAGCGACCGTCAAGAAAATAAGAGATGCAATCGACAATCAAACAGAAGTTACAGTACAACTTATCAACTACACAAAAAGCGGTAAGAAGTTTTGGAATCTGTTTCATCTACAACCTATGCGTGACCAGAAGGGAGAAGTCCAGTATTTTATTGGAGTGCAACTCGATGGTAGTCAAAATGTGGAGCCACTAAGCAATTGCATACCGGAAGTCACAGCAAAAGAGGGGGAAAAATTGATAAAAGAAACTGCAGAAAATGTTGATTTGGCGGCTAGAGAACTTCCGGACGCCAATTTGACACCAGAAGATTTATGGGCAAATCATTCTAAGTTGGTTCAACCAAAACCTCACAGAAGGGACACTCCTTCATGGAAAGCTATTCAGACGATTTTAGACAGTGGCGAACCGATAGGACTGAAACATTTCAAGCCGGTTAAGCCTTTGGGGTCAGGTGATACTGGCAGCGTGCATTTGGTAGAACTGTGTGGGACTGATCAGTATTTTGCAATGAAGGCAATGGATAAGGGTGTTATGCTTAACCGCAACAAGGTGCATAGAGCTTGCGCCGAGAGGGAAATACTCGACATGTTGGATCATCCTTTTCTTCCTGCACTATATGCTTCATTTCAGACAAAAACACATGTTTGTCTTATAACTGATTACTGCCCTGGTGGAGAACTCTTTATGGTTTTGGACAGACAACCTACAAAGGTCTTAAAGGAAGATGCTGTAAGGTTTTATGCTGCTGAAGTTGTCGTTGCATTGGAGTATCTTCATTGTCAAGGGATAATTTACCGTGATCTTAAGCCTGAGAATGTTCTACTCCAACACAATGGACATGTTGCCTTGACAGATTTTGACTTGTCATGTTTGACTTCTTGCAAACCTCAGCTTTTGTTTCCAACTACAAACGAGAAGAAAAGGCAATCAAGATCTCAACAGATTCCAATCTTTATGGCTGAACCTATGCGAGCATCGAATTCGTTTGTCGGCACGGAAGAGTACATAGCACCGGAAATCATTACTGGGGCTGGCCATACTAGTGCAGTGGACTGGTGGGCTTTGGGTATCCTTATGTATGAGATGCTCTATGGATACACACCCTTTAGAGGGAAGACAAGGCAAAAGACTTTTTCCAACATTCTTCACAAGGATCTTAAATTTCCCCGAAGCGTATCGGCTAGTCTCAACCTAAAGCAGTTAATCTTCAGGTTATTACATAGAGATCCCAAAAACCGATTGGGTTCTCGAGAAGGAGCTAACGAAATCAAACGCCATCCTTTTTTCAGAGGTGTCAATTGGGCACTCGTTCGCTGCATGAATCCTCCTGAGCTCGAAGCGCCTCTTTTCAAGGCCACGGATGCTGAAAAAGATGCCAATAAAGCATCAGATTTTGAAATAAAAGATCTTGAACTCAGTGTTTTTTGA 3072 46.48 MKQKKRDQMEPLEKAQPKSSPLAPFPRDIRGSLEVFNPSAGYTSRAINSISRPNPTWPNWAEPRSSADSDSAKLGAKQTSTKSGEEITSWMAIKDSNPSPQPNSPLAQTTISAIMSEKSAAKSADEVGSAALRAAEWGLVLKTDTETGKPQGVGVQSSGGEEANNNKPENSRRTSNNSLRSSGDMSDDGGRERGIPRVSEDLKDALSAFQQTFVVSDASKPDFPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDDGKVLKFIGMLVEVSKHTEGFKDKMVRPNGLPESLIRYDARQKDMATSSVTELVQAVKRPRSVSESRPRALSESMNRPLVRNSGGGFGGDETEDRIDGGMVRRKSESAAPSTGRKFHGRGTRSMQRINELPEKKPKKFSRRSFMGIMRKSQSNIESFDMEDGSDDDIETDDDERPDSVDGKVRQREMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRATVKKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQNVEPLSNCIPEVTAKEGEKLIKETAENVDLAARELPDANLTPEDLWANHSKLVQPKPHRRDTPSWKAIQTILDSGEPIGLKHFKPVKPLGSGDTGSVHLVELCGTDQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFLPALYASFQTKTHVCLITDYCPGGELFMVLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQHNGHVALTDFDLSCLTSCKPQLLFPTTNEKKRQSRSQQIPIFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILMYEMLYGYTPFRGKTRQKTFSNILHKDLKFPRSVSASLNLKQLIFRLLHRDPKNRLGSREGANEIKRHPFFRGVNWALVRCMNPPELEAPLFKATDAEKDANKASDFEIKDLELSVF 1023
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40036313 40049919 + Sed0014299.1 Sed05g2908 715534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2908 1023 SMART serkin_6 690 977 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2908 1023 SMART pac_2 275 317 IPR001610 -
Sed05g2908 1023 SMART pac_2 566 608 IPR001610 -
Sed05g2908 1023 SUPERFAMILY PYP-like sensor domain (PAS domain) 505 604 IPR035965 -
Sed05g2908 1023 MobiDBLite consensus disorder prediction 357 483 - -
Sed05g2908 1023 Pfam Protein kinase domain 692 977 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2908 1023 ProSiteProfiles PAC domain profile. 563 617 IPR000700 -
Sed05g2908 1023 Pfam PAS domain 219 315 IPR000014 -
Sed05g2908 1023 Pfam PAS domain 512 604 IPR000014 -
Sed05g2908 1023 MobiDBLite consensus disorder prediction 388 402 - -
Sed05g2908 1023 ProSiteProfiles PAC domain profile. 272 326 IPR000700 -
Sed05g2908 1023 ProSiteProfiles Protein kinase domain profile. 690 977 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2908 1023 Gene3D Transferase(Phosphotransferase) domain 1 774 988 - -
Sed05g2908 1023 CDD PAS 504 604 IPR000014 -
Sed05g2908 1023 SUPERFAMILY Protein kinase-like (PK-like) 669 997 IPR011009 -
Sed05g2908 1023 FunFam Putative LOV domain-containing protein 774 989 - -
Sed05g2908 1023 CDD PAS 221 314 IPR000014 -
Sed05g2908 1023 ProSitePatterns Protein kinases ATP-binding region signature. 696 719 IPR017441 GO:0005524(InterPro)
Sed05g2908 1023 MobiDBLite consensus disorder prediction 458 473 - -
Sed05g2908 1023 NCBIfam PAS domain S-box protein 224 318 IPR000014 -
Sed05g2908 1023 NCBIfam PAS domain S-box protein 514 604 IPR000014 -
Sed05g2908 1023 Gene3D PAS domain 212 371 - -
Sed05g2908 1023 FunFam Putative LOV domain-containing protein 212 368 - -
Sed05g2908 1023 SUPERFAMILY PYP-like sensor domain (PAS domain) 221 311 IPR035965 -
Sed05g2908 1023 FunFam LOV domain-containing protein 689 773 - -
Sed05g2908 1023 MobiDBLite consensus disorder prediction 1 30 - -
Sed05g2908 1023 MobiDBLite consensus disorder prediction 143 195 - -
Sed05g2908 1023 Gene3D PAS domain 478 642 - -
Sed05g2908 1023 ProSiteProfiles PAS repeat profile. 493 562 IPR000014 -
Sed05g2908 1023 SMART pas_2 491 560 IPR000014 -
Sed05g2908 1023 SMART pas_2 200 269 IPR000014 -
Sed05g2908 1023 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2908 1023 CDD STKc_phototropin_like 688 996 - -
Sed05g2908 1023 MobiDBLite consensus disorder prediction 149 184 - -
Sed05g2908 1023 ProSiteProfiles PAS repeat profile. 198 269 IPR000014 -
Sed05g2908 1023 MobiDBLite consensus disorder prediction 43 86 - -
Sed05g2908 1023 Gene3D Phosphorylase Kinase; domain 1 689 773 - -
Sed05g2908 1023 PANTHER FLIPPASE KINASE 1-RELATED 643 999 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed05g2908 1023 FunFam LOV domain-containing protein 478 642 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0619 Sed-Chr1:4410541 Sed05g2908 Sed-Chr5:40036313 1.80E-294 dispersed
Sed01g0912 Sed-Chr1:6597224 Sed05g2908 Sed-Chr5:40036313 0.00E+00 dispersed
Sed04g3758 Sed-Chr4:46261632 Sed05g2908 Sed-Chr5:40036313 2.30E-231 dispersed
Sed05g2908 Sed-Chr5:40036313 Sed05g3024 Sed-Chr5:40702391 1.20E-305 dispersed
Sed01g0911 Sed-Chr1:6597224 Sed05g2908 Sed-Chr5:40036313 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79250 PF00069 Pkinase 3.90E-63 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2908 K20715 - csv:101214662 1769.59