Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g2908 | ATGAAACAAAAAAAAAGAGACCAAATGGAACCGTTGGAAAAAGCACAGCCAAAATCCTCGCCTCTGGCGCCATTTCCTCGGGACATCCGAGGATCGCTCGAGGTTTTCAATCCCTCGGCCGGCTACACGTCTCGAGCAATCAACTCCATTTCCCGCCCAAACCCAACGTGGCCCAATTGGGCAGAGCCACGTAGCAGCGCGGACTCGGACTCGGCCAAACTCGGCGCCAAACAGACGAGTACTAAATCCGGCGAGGAAATCACGTCATGGATGGCCATCAAGGACTCGAACCCGTCGCCACAACCCAACTCGCCGCTCGCTCAGACAACAATCTCGGCGATCATGAGCGAGAAATCGGCGGCGAAGTCGGCGGACGAAGTGGGGTCTGCCGCCCTACGCGCCGCCGAGTGGGGGCTGGTGCTGAAAACCGACACGGAGACAGGGAAGCCGCAGGGCGTCGGAGTTCAAAGCTCCGGCGGCGAGGAGGCGAATAATAACAAACCGGAGAATTCAAGGCGGACTTCGAATAACTCGTTGCGGAGTTCGGGCGACATGTCGGACGACGGCGGAAGGGAAAGGGGGATTCCGAGAGTCTCTGAAGATTTGAAGGACGCTCTGTCGGCATTTCAACAGACATTTGTGGTTTCTGATGCTTCTAAACCTGATTTTCCGATTATGTACGCCAGTGCTGGATTCTTCAAAATGACTGGCTATACATCCAAGGAAGTTATCGGCAGAAATTGTCGATTTTTACAGGGTGCAGATACAGACCCAGAAGATGTGGCCAAGATCCGAGAAGCTTTACAAGCTGGGACAAGTTACTGTGGGAGGTTGTTGAATTACAAGAAAGATGGGACCCCTTTTTGGAATTTACTTACTATTTCACCTATCAAAGATGATGATGGCAAGGTTCTCAAATTTATTGGAATGCTAGTGGAGGTGAGTAAACACACAGAAGGTTTCAAAGATAAGATGGTCCGTCCCAATGGCTTGCCAGAATCCTTGATTCGTTATGATGCCCGTCAAAAAGACATGGCTACGAGTTCAGTAACAGAGCTTGTGCAGGCTGTGAAAAGGCCCCGATCCGTGAGTGAATCCAGGCCACGGGCTCTAAGTGAATCTATGAATCGGCCGTTGGTTAGAAACTCCGGTGGCGGGTTCGGCGGCGATGAGACCGAGGATAGAATTGATGGTGGAATGGTTAGGCGAAAGTCGGAAAGCGCAGCGCCTTCAACTGGACGGAAATTTCATGGACGAGGCACAAGGTCGATGCAGCGTATCAATGAGCTGCCGGAGAAGAAACCCAAGAAGTTTAGCCGTCGTTCGTTTATGGGGATTATGAGGAAAAGTCAATCAAATATTGAAAGCTTTGACATGGAAGATGGTTCCGACGACGATATTGAGACCGATGACGATGAGAGACCGGATAGTGTCGATGGCAAAGTAAGGCAGAGGGAAATGAGGAAAGGTATTGATTTAGCTACTACTCTCGAACGTATAGAGAAAAACTTCGTGATTACCGATCCTAGATTGCCCGACAATCCCATTATATTTGCTTCTGATAGCTTCTTGGAGCTAACAGAGTACAGTAGAGAAGAAATCTTGGGAAGAAATTGCAGATTTCTGCAAGGTCCTGAAACCGATCGAGCGACCGTCAAGAAAATAAGAGATGCAATCGACAATCAAACAGAAGTTACAGTACAACTTATCAACTACACAAAAAGCGGTAAGAAGTTTTGGAATCTGTTTCATCTACAACCTATGCGTGACCAGAAGGGAGAAGTCCAGTATTTTATTGGAGTGCAACTCGATGGTAGTCAAAATGTGGAGCCACTAAGCAATTGCATACCGGAAGTCACAGCAAAAGAGGGGGAAAAATTGATAAAAGAAACTGCAGAAAATGTTGATTTGGCGGCTAGAGAACTTCCGGACGCCAATTTGACACCAGAAGATTTATGGGCAAATCATTCTAAGTTGGTTCAACCAAAACCTCACAGAAGGGACACTCCTTCATGGAAAGCTATTCAGACGATTTTAGACAGTGGCGAACCGATAGGACTGAAACATTTCAAGCCGGTTAAGCCTTTGGGGTCAGGTGATACTGGCAGCGTGCATTTGGTAGAACTGTGTGGGACTGATCAGTATTTTGCAATGAAGGCAATGGATAAGGGTGTTATGCTTAACCGCAACAAGGTGCATAGAGCTTGCGCCGAGAGGGAAATACTCGACATGTTGGATCATCCTTTTCTTCCTGCACTATATGCTTCATTTCAGACAAAAACACATGTTTGTCTTATAACTGATTACTGCCCTGGTGGAGAACTCTTTATGGTTTTGGACAGACAACCTACAAAGGTCTTAAAGGAAGATGCTGTAAGGTTTTATGCTGCTGAAGTTGTCGTTGCATTGGAGTATCTTCATTGTCAAGGGATAATTTACCGTGATCTTAAGCCTGAGAATGTTCTACTCCAACACAATGGACATGTTGCCTTGACAGATTTTGACTTGTCATGTTTGACTTCTTGCAAACCTCAGCTTTTGTTTCCAACTACAAACGAGAAGAAAAGGCAATCAAGATCTCAACAGATTCCAATCTTTATGGCTGAACCTATGCGAGCATCGAATTCGTTTGTCGGCACGGAAGAGTACATAGCACCGGAAATCATTACTGGGGCTGGCCATACTAGTGCAGTGGACTGGTGGGCTTTGGGTATCCTTATGTATGAGATGCTCTATGGATACACACCCTTTAGAGGGAAGACAAGGCAAAAGACTTTTTCCAACATTCTTCACAAGGATCTTAAATTTCCCCGAAGCGTATCGGCTAGTCTCAACCTAAAGCAGTTAATCTTCAGGTTATTACATAGAGATCCCAAAAACCGATTGGGTTCTCGAGAAGGAGCTAACGAAATCAAACGCCATCCTTTTTTCAGAGGTGTCAATTGGGCACTCGTTCGCTGCATGAATCCTCCTGAGCTCGAAGCGCCTCTTTTCAAGGCCACGGATGCTGAAAAAGATGCCAATAAAGCATCAGATTTTGAAATAAAAGATCTTGAACTCAGTGTTTTTTGA | 3072 | 46.48 | MKQKKRDQMEPLEKAQPKSSPLAPFPRDIRGSLEVFNPSAGYTSRAINSISRPNPTWPNWAEPRSSADSDSAKLGAKQTSTKSGEEITSWMAIKDSNPSPQPNSPLAQTTISAIMSEKSAAKSADEVGSAALRAAEWGLVLKTDTETGKPQGVGVQSSGGEEANNNKPENSRRTSNNSLRSSGDMSDDGGRERGIPRVSEDLKDALSAFQQTFVVSDASKPDFPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDDGKVLKFIGMLVEVSKHTEGFKDKMVRPNGLPESLIRYDARQKDMATSSVTELVQAVKRPRSVSESRPRALSESMNRPLVRNSGGGFGGDETEDRIDGGMVRRKSESAAPSTGRKFHGRGTRSMQRINELPEKKPKKFSRRSFMGIMRKSQSNIESFDMEDGSDDDIETDDDERPDSVDGKVRQREMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRATVKKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQNVEPLSNCIPEVTAKEGEKLIKETAENVDLAARELPDANLTPEDLWANHSKLVQPKPHRRDTPSWKAIQTILDSGEPIGLKHFKPVKPLGSGDTGSVHLVELCGTDQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFLPALYASFQTKTHVCLITDYCPGGELFMVLDRQPTKVLKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQHNGHVALTDFDLSCLTSCKPQLLFPTTNEKKRQSRSQQIPIFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILMYEMLYGYTPFRGKTRQKTFSNILHKDLKFPRSVSASLNLKQLIFRLLHRDPKNRLGSREGANEIKRHPFFRGVNWALVRCMNPPELEAPLFKATDAEKDANKASDFEIKDLELSVF | 1023 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 40036313 | 40049919 | + | Sed0014299.1 | Sed05g2908 | 715534 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g2908 | 1023 | SMART | serkin_6 | 690 | 977 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g2908 | 1023 | SMART | pac_2 | 275 | 317 | IPR001610 | - | |
Sed05g2908 | 1023 | SMART | pac_2 | 566 | 608 | IPR001610 | - | |
Sed05g2908 | 1023 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 505 | 604 | IPR035965 | - | |
Sed05g2908 | 1023 | MobiDBLite | consensus disorder prediction | 357 | 483 | - | - | |
Sed05g2908 | 1023 | Pfam | Protein kinase domain | 692 | 977 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g2908 | 1023 | ProSiteProfiles | PAC domain profile. | 563 | 617 | IPR000700 | - | |
Sed05g2908 | 1023 | Pfam | PAS domain | 219 | 315 | IPR000014 | - | |
Sed05g2908 | 1023 | Pfam | PAS domain | 512 | 604 | IPR000014 | - | |
Sed05g2908 | 1023 | MobiDBLite | consensus disorder prediction | 388 | 402 | - | - | |
Sed05g2908 | 1023 | ProSiteProfiles | PAC domain profile. | 272 | 326 | IPR000700 | - | |
Sed05g2908 | 1023 | ProSiteProfiles | Protein kinase domain profile. | 690 | 977 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g2908 | 1023 | Gene3D | Transferase(Phosphotransferase) domain 1 | 774 | 988 | - | - | |
Sed05g2908 | 1023 | CDD | PAS | 504 | 604 | IPR000014 | - | |
Sed05g2908 | 1023 | SUPERFAMILY | Protein kinase-like (PK-like) | 669 | 997 | IPR011009 | - | |
Sed05g2908 | 1023 | FunFam | Putative LOV domain-containing protein | 774 | 989 | - | - | |
Sed05g2908 | 1023 | CDD | PAS | 221 | 314 | IPR000014 | - | |
Sed05g2908 | 1023 | ProSitePatterns | Protein kinases ATP-binding region signature. | 696 | 719 | IPR017441 | GO:0005524(InterPro) | |
Sed05g2908 | 1023 | MobiDBLite | consensus disorder prediction | 458 | 473 | - | - | |
Sed05g2908 | 1023 | NCBIfam | PAS domain S-box protein | 224 | 318 | IPR000014 | - | |
Sed05g2908 | 1023 | NCBIfam | PAS domain S-box protein | 514 | 604 | IPR000014 | - | |
Sed05g2908 | 1023 | Gene3D | PAS domain | 212 | 371 | - | - | |
Sed05g2908 | 1023 | FunFam | Putative LOV domain-containing protein | 212 | 368 | - | - | |
Sed05g2908 | 1023 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 221 | 311 | IPR035965 | - | |
Sed05g2908 | 1023 | FunFam | LOV domain-containing protein | 689 | 773 | - | - | |
Sed05g2908 | 1023 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Sed05g2908 | 1023 | MobiDBLite | consensus disorder prediction | 143 | 195 | - | - | |
Sed05g2908 | 1023 | Gene3D | PAS domain | 478 | 642 | - | - | |
Sed05g2908 | 1023 | ProSiteProfiles | PAS repeat profile. | 493 | 562 | IPR000014 | - | |
Sed05g2908 | 1023 | SMART | pas_2 | 491 | 560 | IPR000014 | - | |
Sed05g2908 | 1023 | SMART | pas_2 | 200 | 269 | IPR000014 | - | |
Sed05g2908 | 1023 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 811 | 823 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed05g2908 | 1023 | CDD | STKc_phototropin_like | 688 | 996 | - | - | |
Sed05g2908 | 1023 | MobiDBLite | consensus disorder prediction | 149 | 184 | - | - | |
Sed05g2908 | 1023 | ProSiteProfiles | PAS repeat profile. | 198 | 269 | IPR000014 | - | |
Sed05g2908 | 1023 | MobiDBLite | consensus disorder prediction | 43 | 86 | - | - | |
Sed05g2908 | 1023 | Gene3D | Phosphorylase Kinase; domain 1 | 689 | 773 | - | - | |
Sed05g2908 | 1023 | PANTHER | FLIPPASE KINASE 1-RELATED | 643 | 999 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Sed05g2908 | 1023 | FunFam | LOV domain-containing protein | 478 | 642 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0619 | Sed-Chr1:4410541 | Sed05g2908 | Sed-Chr5:40036313 | 1.80E-294 | dispersed | |
Sed01g0912 | Sed-Chr1:6597224 | Sed05g2908 | Sed-Chr5:40036313 | 0.00E+00 | dispersed | |
Sed04g3758 | Sed-Chr4:46261632 | Sed05g2908 | Sed-Chr5:40036313 | 2.30E-231 | dispersed | |
Sed05g2908 | Sed-Chr5:40036313 | Sed05g3024 | Sed-Chr5:40702391 | 1.20E-305 | dispersed | |
Sed01g0911 | Sed-Chr1:6597224 | Sed05g2908 | Sed-Chr5:40036313 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79250 | PF00069 | Pkinase | 3.90E-63 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g2908 | K20715 | - | csv:101214662 | 1769.59 |