Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2923 ATGGATTGTAGAAGAAGATTTGGATTGCTGATATGGGGTTTGTTTATTTCGTTGCTGCCTTGCATTTCTTGTTTGTTTAATCCGGTTGATAATTACCATATTGACTGTGGATCGCCTGCAAATGTCTCTGTGGGTCGGCGTGTTTTTATGGCTGATAATTTGGGCTCAAGTTTACTTTCTACCCCACAAGTTATTTTGGCTAATTCCTCTTCAGTTCCTGCCTCTTCTTTCAATGATTCGTCGCTGTTCCAAACCGCCCGAATCTTTACCGGAACATCGAAATTCAAGTTTCCGATCCATAAGATTGGAAGGCACTGGATTCGTCTCTATTTCTATCCATTTGTGTTTTCTGGCTTTGATATGAGTGTTGCAAATTTTAGTGTTTCAACCCAAAATTTTGTTCTGCTGAAAGATTTGGTTGTGGAGAAGAATCCTGTTGTTAAGGAATTCTCTGTGGATGTAACATCAGATACTCTTGAAGTTATCTTTGCTCCTGTTAATGACTCCATTGCTTATGTGAATGCCATTGAGGTTGTTTCTGTTCCTGATATTCTCATTGCTGATGAAGCCACTTTGTTAGAACCATCTGGTAAATTTCAAGGGCTGACTACTTTGGCATATGAGACACTTGCTAGGGTTAATATGGGTGGCTCAAAAGTTGCTCCTGATGATGATCCTCTTACGCGGAGTTGGGTTTCTGATGGAAGCTTTCGAGTTAACGAGAATTCTGCAACAGATTTCTCCAACATTCCAGCTGTTAAATACAGGGATGACGGGGCAGCGCCCGAGATTGCTCCAAATGTTGTCTATGGTACCCTCGTGGAGATGAACTCGAAGGATGATCCGAACAGCAATTTCAATGTGACATGGCGGTTTAAAGTGGATCCTGAGTTTCAATACCTTGTTCGGTTTCACTTCTGCGACATAGTGAGCAAATCTCTACACCAACTTTATTTCAATATATACATTGACTCGTGGCTGGTTTATCAGGATTTTGATCTTAGCATTCCTCTTAATAATGCCCTGGGTACTCCATATTATATGGATTCTGTTACAGGATTGATCAAGAATGACATACTACTTGTAAGTATTGGCCCATCAAACTTAGCTAATGTGTATCCAAATGCCATTCTAAATGGTCTGGAAGTCATGAAAATGAACAACTCGGCTGGCAGTCTCAGTGGGGAAGGCTCTGTAATTAGTTTTCCAGACTCATCTTCTTCAAATAAGCACATTGGCGTCATTGTGGGTGTGAGTGTTGGGGCAGTTGTTGCAGCTATATTGATTGGTATTCTGTTTATGTTGCACAGACGAAAAGGAAAAGGAACGCATCAAGCTCCATCAAAAACATGGATTTCGATTTCCACTGCCGGAGGAATGTCACACACGATGGGAAGTAAATACTCAAATGGCACACACACGAGTGTTGCTTCCAACTATGGGTATCGCATTCCTTTTGCAACGGTTCAAGAGGCTACAAATAACTTTGATGAGAGCCGGGTTATCGGTATTGGTGGGTTCGGGAAAGTATACAAAGGGGTTTTAAATGATGGCACCAAAATTGCTGCGAAGAGAGGTAACCCGCGTTCCCAACAAGGACTGGCAGAGTTTCAAACTGAAATCGAGATGCTATCACAGTTCCGTCATCGCCATCTTGTTTCATTGATTGGATACTGTGATGAGAAGAATGAGATGATACTGATTTATGAGTATATGGAACAGGGGACTCTGAAGAGTCATCTTTATGGTGCTGATTTTCCTAGTTTGAGCTGGAAGGAGAGACTTGAGGCTTGCATCGGAGCTGCCAGAGGACTTCATTACCTCCATACTGGTTATGCCAAACCAGTTATTCATCGTGATGTGAAGTCCGCTAACATTTTACTCGACGAAAATCTCATGGCAAAGGTTGCTGACTTTGGGCTTTCAAAGACAGGACCTGAACTTGATCAAACTCATGTCAGTACAGCTGTGAAAGGTAGTTTTGGGTACCTCGATCCTGAATATTACAGGAGGCAACAACTGACTGAGAAATCAGATGTTTATTCTTTTGGAGTTGTTTTGTTTGAAGTCCTTTGTGCAAGACCTGTCATAGACCCAACCCTTCCTAGAGAAATGGTAAACTTAGCTGAATGGGCAATGAAATGGCAGAAGAGAGGGCAGTTGGACCAGATCATTGATTCTACTCTAGTTGGAAAAATTAAACCAACTTCTCTAAGGAAGTTTGGAGAAACTGCTGAAAAATGCTTGGCTGACTATGGAGTTGACAGGCCATCTATGGGAGATGTGTTATGGAATTTGGAGTACGCGCTTCAGCTACAAGAAGCCGTTGTTGAAGTCGATCCGGAAGATAACAGTACAAATATGATCGGTGAGCTCCCTTCACAAATTAACAATTTCAATGATATCGAGACAGGTCCTTCTACTGCACGGTTTGACATTCCGGGTGTGGATGATCTTTCTGGAGTCTCCATGAGTAGGGTGTTCTCACAGCTGGTGAAATCTGAGGGTAGATGA 2514 42.16 MDCRRRFGLLIWGLFISLLPCISCLFNPVDNYHIDCGSPANVSVGRRVFMADNLGSSLLSTPQVILANSSSVPASSFNDSSLFQTARIFTGTSKFKFPIHKIGRHWIRLYFYPFVFSGFDMSVANFSVSTQNFVLLKDLVVEKNPVVKEFSVDVTSDTLEVIFAPVNDSIAYVNAIEVVSVPDILIADEATLLEPSGKFQGLTTLAYETLARVNMGGSKVAPDDDPLTRSWVSDGSFRVNENSATDFSNIPAVKYRDDGAAPEIAPNVVYGTLVEMNSKDDPNSNFNVTWRFKVDPEFQYLVRFHFCDIVSKSLHQLYFNIYIDSWLVYQDFDLSIPLNNALGTPYYMDSVTGLIKNDILLVSIGPSNLANVYPNAILNGLEVMKMNNSAGSLSGEGSVISFPDSSSSNKHIGVIVGVSVGAVVAAILIGILFMLHRRKGKGTHQAPSKTWISISTAGGMSHTMGSKYSNGTHTSVASNYGYRIPFATVQEATNNFDESRVIGIGGFGKVYKGVLNDGTKIAAKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEKNEMILIYEYMEQGTLKSHLYGADFPSLSWKERLEACIGAARGLHYLHTGYAKPVIHRDVKSANILLDENLMAKVADFGLSKTGPELDQTHVSTAVKGSFGYLDPEYYRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWAMKWQKRGQLDQIIDSTLVGKIKPTSLRKFGETAEKCLADYGVDRPSMGDVLWNLEYALQLQEAVVEVDPEDNSTNMIGELPSQINNFNDIETGPSTARFDIPGVDDLSGVSMSRVFSQLVKSEGR 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40135434 40139546 - Sed0014280.3 Sed05g2923 715549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2923 837 Gene3D - 31 181 - -
Sed05g2923 837 Gene3D - 205 388 - -
Sed05g2923 837 FunFam receptor-like protein kinase FERONIA 460 571 - -
Sed05g2923 837 Pfam Malectin-like domain 34 385 IPR024788 -
Sed05g2923 837 FunFam Receptor-like protein kinase FERONIA 206 388 - -
Sed05g2923 837 Gene3D Transferase(Phosphotransferase) domain 1 572 789 - -
Sed05g2923 837 SMART serkin_6 496 769 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2923 837 FunFam Receptor-like protein kinase FERONIA 572 787 - -
Sed05g2923 837 SUPERFAMILY Protein kinase-like (PK-like) 471 767 IPR011009 -
Sed05g2923 837 CDD STKc_IRAK 502 767 - -
Sed05g2923 837 Gene3D Phosphorylase Kinase; domain 1 458 571 - -
Sed05g2923 837 ProSiteProfiles Protein kinase domain profile. 496 769 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2923 837 FunFam Putative receptor-like protein kinase 31 182 - -
Sed05g2923 837 ProSitePatterns Protein kinases ATP-binding region signature. 502 524 IPR017441 GO:0005524(InterPro)
Sed05g2923 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2923 837 Pfam Protein tyrosine and serine/threonine kinase 499 693 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2923 837 PANTHER OS07G0166700 PROTEIN 483 774 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2921 Sed-Chr5:40135434 Sed05g2923 Sed-Chr5:40135434 0.00E+00 dispersed
Sed05g2923 Sed-Chr5:40135434 Sed07g2623 Sed-Chr7:41685629 6.00E-228 dispersed
Sed05g2922 Sed-Chr5:40135434 Sed05g2923 Sed-Chr5:40135434 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79253 PF12819 Malectin_like 3.00E-32 CL0202 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2923 - - - 0.0