Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2940 ATGAACAAAGGTTTTTGGTTGGCAAAGGGTGCGGGGCATGAAAATGATCCAAATTCAACTTTTGACTGCCAGTCATTATTAGACACTAAGCGGGCTCATCACTGGTTTATAGATGGTTGTGAAGCACAGGTTTTCCCCAACAAGAAGCAAGCAATTCAAGCTCCAACTAGTAAAATGATAGGAACCCTTTCAAATGTGAATGTTCTACAATGGGAGCAGCATAGTGATAATTATCATTCTATTTCACATCAACTTATTGGTCGTTTATTTGGATCTGAATCAGTGAGGCCTGCTGACTTTGAACTAACCAAAGCATCTTCTGTAATTCCTGATAATTTTGATCTCAGGAGAAAAGGTCTGGGAGACCAATATGGAGAGGATGAGGATGCATCTGTTGGGTTATCTATATCTCATGGTTTGGAGGATCCTGAATCATCTCTTAGCTATGGAGGAATTAGAAAAGTGAAAATCAATCAGGTTAAAGATAATGTCCATGGTTTGCAACCATGTCTAAGAAATGATTATAATAGGGAAGATGGTGGTCAACTATCCATAGAAGGTTACTATAAGGAAATAGAGTCGGGTCTTGTATCTGTGGGATCGGCCTATATTAAGGAGGACGAGGGTTTCGATTTGATAAATCAAACCTCGAACGATGGGGATCACCATATTGGCTTACTAGGAGGTCATAGTGGAAAGATAGATCACAATGTTGTTTCCATTGATGACGATTACAGTAAGCAGGATCCTAATATTATCTCATTTGGTGGATTTCCTGATGATCAAGATATTATCTCCTTAGGCAGGTCTCTTGGCAGCCATGACCCAACATTCTACGAATCTTCATTCCACCCATCTGAAGTTGTTGGTGTCACAGATTTCAAATCGTCAAATTTTGATGTATCTGTAAGCAGTACTCAGATAGCTAAGCAAAAGCCCGATATGATACCAAAGAGTAGGCCAGAATACAAAATGAGGAAAGAAGCTCCAAACAGCTTTCCTTCAAATGTTCGAAGTTTGATATCAACCGGTATGCTCGATGGTGTTCCTGTGAAGTATGTTTCTGTAGCTAGAGAGGAGCTTCGTGGAGTTATAAGGGGATCTGGCTATCTCTGTGGATGCCAATCTTGCAACTTTTCCAAGATGCTTAATGCCTATGAGTTTGAGCGCCATGCTGGCTGCAAAACAAAACACCCAAATAACCATATATACTTCGAGAATGGTAAGACTATTTATCAGATAGTACAAGAATTAAGAAGCACGCCAGAGAGCTTGTTGTTTGATACAATTCAAACCATCTTTGGTGCACCTATCAATCAGAAATCGTTTCGGATTTGGAAAGAATCATTTCAAGCAGCTACCCGTGAGCTTCAGCGCATATATGGCAAGGATGAACTTAACCTTTAG 1407 40.01 MNKGFWLAKGAGHENDPNSTFDCQSLLDTKRAHHWFIDGCEAQVFPNKKQAIQAPTSKMIGTLSNVNVLQWEQHSDNYHSISHQLIGRLFGSESVRPADFELTKASSVIPDNFDLRRKGLGDQYGEDEDASVGLSISHGLEDPESSLSYGGIRKVKINQVKDNVHGLQPCLRNDYNREDGGQLSIEGYYKEIESGLVSVGSAYIKEDEGFDLINQTSNDGDHHIGLLGGHSGKIDHNVVSIDDDYSKQDPNIISFGGFPDDQDIISLGRSLGSHDPTFYESSFHPSEVVGVTDFKSSNFDVSVSSTQIAKQKPDMIPKSRPEYKMRKEAPNSFPSNVRSLISTGMLDGVPVKYVSVAREELRGVIRGSGYLCGCQSCNFSKMLNAYEFERHAGCKTKHPNNHIYFENGKTIYQIVQELRSTPESLLFDTIQTIFGAPINQKSFRIWKESFQAATRELQRIYGKDELNL 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40260929 40264412 + Sed0023268.1 Sed05g2940 715566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2940 468 Pfam Tify domain binding domain 363 418 IPR032308 -
Sed05g2940 468 PANTHER AUTOIMMUNE REGULATOR 1 452 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2940 Sed-Chr5:40260929 Sed07g2463 Sed-Chr7:40387145 1.20E-76 dispersed
Sed05g2940 Sed-Chr5:40260929 Sed05g2941 Sed-Chr5:40260929 3.00E-224 tandem
Sed02g0694 Sed-Chr2:44809745 Sed05g2940 Sed-Chr5:40260929 2.40E-38 wgd
Sed04g2818 Sed-Chr4:40121698 Sed05g2940 Sed-Chr5:40260929 3.70E-75 wgd
Sed05g2940 Sed-Chr5:40260929 Sed07g2462 Sed-Chr7:40387145 4.30E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2940 - - - 0.0