Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2941 ATGAACAAAGGTTTTTGGTTGGCAAAGGGTGCGGGGCATGAAAATGATCCAAATTCAACTTTTGACTGCCAGTCATTATTAGACACTAAGCGGGCTCATCACTGGTTTATAGATGGTTGTGAAGCACAGGTTTTCCCCAACAAGAAGCAAGCAATTCAAGCTCCAACTAGTAAAATGATAGGAACCCTTTCAAATGTGAATGTTCTACAATGGGAGCAGCATAGTGATAATTATCATTCTATTTCACATCAACTTATTGGTCGTTTATTTGGATCTGAATCAGTGAGGCCTGCTGACTTTGAACTAACCAAAGCATCTTCTGTAATTCCTGATAATTTTGATCTCAGGAGAAAAGGTCTGGGAGACCAATATGGAGAGGATGAGGATGCATCTGTTGGGTTATCTATATCTCATGGTTTGGAGGATCCTGAATCATCTCTTAGCTATGGAGGAATTAGAAAAGTGAAAATCAATCAGGTTAAAGATAATGTCCATGGTTTGCAACCATGTCTAAGAAATGATTATAATAGGGAAGATGGTGGTCAACTATCCATAGAAGGTTACTATAAGGAAATAGAGTCGGGTCTTGTATCTGTGGGATCGGCCTATATTAAGGAGGACGAGGGTTTCGATTTGATAAATCAAACCTCGAACGATGGGGATCACCATATTGGCTTACTAGGAGGTCATAGTGGAAAGATAGATCACAATGTTGTTTCCATTGATGACGATTACAGTAAGCAGGATCCTAATATTATCTCATTTGGTGGATTTCCTGATGATCAAGATATTATCTCCTTAGGCAGGTCTCTTGGCAGCCATGACCCAACATTCTACGAATCTTCATTCCACCCATCTGAAGTTGTTGGTGTCACAGATTTCAAATCGTCAAATTTTGATGTATCTGTAAGCAGTACTCAGATAGCTAAGCAAAAGCCCGATATGATACCAAAGAGTAGGCCAGAATACAAAATGAGGAAAGAAGCTCCAAACAGCTTTCCTTCAAATGTTCGAAGTTTGATATCAACCGGTATGCTCGATGGTGTTCCTGTGAAGTATGTTTCTGTAGCTAGAGAGGAGCTTCGTGGAGTTATAAGGGGATCTGGCTATCTCTGTGGATGCCAATCTTGCAACTTTTCCAAGATGCTTAATGCCTATGAGTTTGAGCGCCATGCTGGCTGCAAAACAAAACACCCAAATAACCATATATACTTCGAGAATGGTAAGACTATTTATCAGATAGTACAAGAATTAAGAAGCACGCCAGAGAGCTTGTTGTTTGATACAATTCAAACCATCTTTGGTGCACCTATCAATCAGAAATCGTTTCGGATTTGGAAAGGTAAAGAAGTTTCTATTTCAGAAATTCATCCACGAGAAGCAACTCTTACCCCTCTATTGCACTTACACACACGCACAAACACGTTAAGAATTGAATTGCTGCAGAGGCTAGGACTGTAA 1461 39.9 MNKGFWLAKGAGHENDPNSTFDCQSLLDTKRAHHWFIDGCEAQVFPNKKQAIQAPTSKMIGTLSNVNVLQWEQHSDNYHSISHQLIGRLFGSESVRPADFELTKASSVIPDNFDLRRKGLGDQYGEDEDASVGLSISHGLEDPESSLSYGGIRKVKINQVKDNVHGLQPCLRNDYNREDGGQLSIEGYYKEIESGLVSVGSAYIKEDEGFDLINQTSNDGDHHIGLLGGHSGKIDHNVVSIDDDYSKQDPNIISFGGFPDDQDIISLGRSLGSHDPTFYESSFHPSEVVGVTDFKSSNFDVSVSSTQIAKQKPDMIPKSRPEYKMRKEAPNSFPSNVRSLISTGMLDGVPVKYVSVAREELRGVIRGSGYLCGCQSCNFSKMLNAYEFERHAGCKTKHPNNHIYFENGKTIYQIVQELRSTPESLLFDTIQTIFGAPINQKSFRIWKGKEVSISEIHPREATLTPLLHLHTRTNTLRIELLQRLGL 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40260929 40264412 + Sed0023268.2 Sed05g2941 715567

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2941 486 PANTHER AUTOIMMUNE REGULATOR 1 449 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Sed05g2941 486 Pfam Tify domain binding domain 363 418 IPR032308 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2941 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2941 Sed-Chr5:40260929 Sed07g2464 Sed-Chr7:40387145 5.70E-69 dispersed
Sed05g2940 Sed-Chr5:40260929 Sed05g2941 Sed-Chr5:40260929 3.00E-224 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g395 . . . . . . Bma14g00490 . . . . . . . . Cpe05g00901 . . . . . . . . Cla02g01990 Cam02g2110 Cec02g2150 Cco02g2180 Clacu02g2097 . . . . . . . Csa06g01725 . Cme11g01269 . . . . . Bpe11g00777 . . Sed05g2941 Cmo02g00831 Cmo20g00463 . Cma20g00425 Car02g00597 Car20g00370 . . Bhi10g00666 Tan05g0358 Cmetu11g0841 . Hepe08g0810 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g1413 . 26 689 PHD Transcription Factor Family AT2G36720 53.2 2.9e-200 696.8
Sed02g0694 . 25 841 PHD Transcription Factor Family AT3G53680 53.0 8.5e-246 847.8
Sed02g0695 . 25 841 PHD Transcription Factor Family AT3G53680 53.0 8.5e-246 847.8
Sed04g1286 . 19 820 PHD Transcription Factor Family AT3G53680 52.7 1.4e-240 830.5
Sed04g1287 . 19 820 PHD Transcription Factor Family AT3G53680 52.7 1.4e-240 830.5
Sed04g1288 . 19 820 PHD Transcription Factor Family AT3G53680 52.7 1.4e-240 830.5
Sed04g1413 . 228 685 PHD Transcription Factor Family AT3G53680 52.6 2.5e-136 484.2
Sed05g2940 . 313 451 PHD Transcription Factor Family AT3G53680 51.1 9.9e-37 153.3
Sed04g2818 . 440 566 PHD Transcription Factor Family AT3G53680 53.5 2.2e-36 152.1
Sed04g2819 . 440 566 PHD Transcription Factor Family AT3G53680 53.5 2.2e-36 152.1
Sed07g2464 . 435 563 PHD Transcription Factor Family AT3G53680 53.5 4.9e-36 151.0
Sed05g2941 . 313 448 PHD Transcription Factor Family AT3G53680 50.7 4.9e-36 151.0
Sed07g2462 . 426 555 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed07g2463 . 435 564 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed07g2465 . 435 564 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed07g2466 . 426 555 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed07g2467 . 426 555 PHD Transcription Factor Family AT3G53680 53.1 6.4e-36 150.6
Sed12g1554 . 251 395 PHD Transcription Factor Family AT5G12400 52.3 1.2e-38 160.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004604 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 4 3 42