Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g2954 | ATGGCTCACTCTAATTCTATTCCAATCTTCTTAGATCCCCCAAATTGGCACCAGCCCCAAACAAATGATGATCACAATCCAGACCCACGTCCGCTGCCGGCGTTTCTCCCGCCACCGCCACCTATGACGGCTCATGGAGGCGGAGTTCGGCCGGGTTCTATGGCGTATAGAGCCCGGCTGGCAATGATACCTCTGCCGGAGGTGGCGCTGAAATGTCCACGTTGTGATTCTACAAACACAAAATTCTGTTACTTCAATAATTACAGCCTTTCTCAGCCGAGACACTTCTGTAAAGCCTGCCGCCGGTACTGGACTCGCGGCGGCGCTCTTAGAAATGTTCCCGTCGGCGGAGGGTTTCGTAAGAACAAGAAGAAGAAGAAATCTAACCAATCCAAATCTCCAATTGCCAATCAAACTGAAATGGGCAATTCAAGATCAATGGATGGTACAATAATCTCAACAAGCAATAACATTGAAAACACCACAAATTCAATGAGCCATTTCCCATCACAACCATTACATTTACCTTCAATTCCATCTCTTCAACGCAATCTCTCTCGTTTTGGAGCTCCACCAAACAACTCAGCCCTCAACTTCGCCGGAATTCACATCGGAAACATAAATTCCGGCAGGGAATTGGACCAATGGCAGCAGCAACCGCCGAGGTTCATCGTCGAACCACCGGCCACCGCCACCGCATACCCTCAAAGCCTTGAAACCGAAGCCAACAACTTTGGCCACAACACACCATCATCTTTACAATATAATTGTCACCAACAACTTCAGAATTCGACACCCTTTTCGAGAATTCCGATGAAAAATGAAGAACAAGTAATTTTATCGAACTTCTTACGACCAGCTGATCAAAACAGCCACTTTTGGGGAAATGATCATCAAAGTTCATGGACGGATTTATCAGCTCTTAGCTCATCTTCAAGCAGCCATCTTTTGTAA | 954 | 46.54 | MAHSNSIPIFLDPPNWHQPQTNDDHNPDPRPLPAFLPPPPPMTAHGGGVRPGSMAYRARLAMIPLPEVALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGFRKNKKKKKSNQSKSPIANQTEMGNSRSMDGTIISTSNNIENTTNSMSHFPSQPLHLPSIPSLQRNLSRFGAPPNNSALNFAGIHIGNINSGRELDQWQQQPPRFIVEPPATATAYPQSLETEANNFGHNTPSSLQYNCHQQLQNSTPFSRIPMKNEEQVILSNFLRPADQNSHFWGNDHQSSWTDLSALSSSSSSHLL | 317 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 40315474 | 40317450 | + | Sed0025776.1 | Sed05g2954 | 715580 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g2954 | 317 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 67 | 236 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g2954 | 317 | MobiDBLite | consensus disorder prediction | 114 | 155 | - | - | |
Sed05g2954 | 317 | MobiDBLite | consensus disorder prediction | 131 | 155 | - | - | |
Sed05g2954 | 317 | ProSitePatterns | Zinc finger Dof-type signature. | 72 | 108 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed05g2954 | 317 | ProSiteProfiles | Zinc finger Dof-type profile. | 70 | 124 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed05g2954 | 317 | MobiDBLite | consensus disorder prediction | 30 | 45 | - | - | |
Sed05g2954 | 317 | MobiDBLite | consensus disorder prediction | 11 | 50 | - | - | |
Sed05g2954 | 317 | Pfam | Dof domain, zinc finger | 69 | 124 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g2954 | Sed-Chr5:40315474 | Sed13g1381 | Sed-Chr13:19271891 | 1.10E-49 | dispersed | |
Sed01g1076 | Sed-Chr1:8089939 | Sed05g2954 | Sed-Chr5:40315474 | 1.00E-44 | wgd | |
Sed01g0886 | Sed-Chr1:6413816 | Sed05g2954 | Sed-Chr5:40315474 | 6.30E-111 | wgd | |
Sed13g1380 | Sed-Chr13:19271891 | Sed05g2954 | Sed-Chr5:40315474 | 1.20E-51 | wgd | |
Sed02g0688 | Sed-Chr2:44720217 | Sed05g2954 | Sed-Chr5:40315474 | 7.10E-39 | wgd | |
Sed04g2829 | Sed-Chr4:40196822 | Sed05g2954 | Sed-Chr5:40315474 | 3.80E-45 | wgd | |
Sed04g1274 | Sed-Chr4:26722099 | Sed05g2954 | Sed-Chr5:40315474 | 6.00E-38 | wgd | |
Sed05g2954 | Sed-Chr5:40315474 | Sed07g2483 | Sed-Chr7:40537389 | 7.50E-38 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38667 | PF02701 | zf-Dof | 5.40E-33 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g2954 | - | - | - | 0.0 |