Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2954 ATGGCTCACTCTAATTCTATTCCAATCTTCTTAGATCCCCCAAATTGGCACCAGCCCCAAACAAATGATGATCACAATCCAGACCCACGTCCGCTGCCGGCGTTTCTCCCGCCACCGCCACCTATGACGGCTCATGGAGGCGGAGTTCGGCCGGGTTCTATGGCGTATAGAGCCCGGCTGGCAATGATACCTCTGCCGGAGGTGGCGCTGAAATGTCCACGTTGTGATTCTACAAACACAAAATTCTGTTACTTCAATAATTACAGCCTTTCTCAGCCGAGACACTTCTGTAAAGCCTGCCGCCGGTACTGGACTCGCGGCGGCGCTCTTAGAAATGTTCCCGTCGGCGGAGGGTTTCGTAAGAACAAGAAGAAGAAGAAATCTAACCAATCCAAATCTCCAATTGCCAATCAAACTGAAATGGGCAATTCAAGATCAATGGATGGTACAATAATCTCAACAAGCAATAACATTGAAAACACCACAAATTCAATGAGCCATTTCCCATCACAACCATTACATTTACCTTCAATTCCATCTCTTCAACGCAATCTCTCTCGTTTTGGAGCTCCACCAAACAACTCAGCCCTCAACTTCGCCGGAATTCACATCGGAAACATAAATTCCGGCAGGGAATTGGACCAATGGCAGCAGCAACCGCCGAGGTTCATCGTCGAACCACCGGCCACCGCCACCGCATACCCTCAAAGCCTTGAAACCGAAGCCAACAACTTTGGCCACAACACACCATCATCTTTACAATATAATTGTCACCAACAACTTCAGAATTCGACACCCTTTTCGAGAATTCCGATGAAAAATGAAGAACAAGTAATTTTATCGAACTTCTTACGACCAGCTGATCAAAACAGCCACTTTTGGGGAAATGATCATCAAAGTTCATGGACGGATTTATCAGCTCTTAGCTCATCTTCAAGCAGCCATCTTTTGTAA 954 46.54 MAHSNSIPIFLDPPNWHQPQTNDDHNPDPRPLPAFLPPPPPMTAHGGGVRPGSMAYRARLAMIPLPEVALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGFRKNKKKKKSNQSKSPIANQTEMGNSRSMDGTIISTSNNIENTTNSMSHFPSQPLHLPSIPSLQRNLSRFGAPPNNSALNFAGIHIGNINSGRELDQWQQQPPRFIVEPPATATAYPQSLETEANNFGHNTPSSLQYNCHQQLQNSTPFSRIPMKNEEQVILSNFLRPADQNSHFWGNDHQSSWTDLSALSSSSSSHLL 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40315474 40317450 + Sed0025776.1 Sed05g2954 715580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2954 317 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 67 236 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2954 317 MobiDBLite consensus disorder prediction 114 155 - -
Sed05g2954 317 MobiDBLite consensus disorder prediction 131 155 - -
Sed05g2954 317 ProSitePatterns Zinc finger Dof-type signature. 72 108 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed05g2954 317 ProSiteProfiles Zinc finger Dof-type profile. 70 124 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed05g2954 317 MobiDBLite consensus disorder prediction 30 45 - -
Sed05g2954 317 MobiDBLite consensus disorder prediction 11 50 - -
Sed05g2954 317 Pfam Dof domain, zinc finger 69 124 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2954 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2954 Sed-Chr5:40315474 Sed13g1381 Sed-Chr13:19271891 1.10E-49 dispersed
Sed01g1076 Sed-Chr1:8089939 Sed05g2954 Sed-Chr5:40315474 1.00E-44 wgd
Sed01g0886 Sed-Chr1:6413816 Sed05g2954 Sed-Chr5:40315474 6.30E-111 wgd
Sed13g1380 Sed-Chr13:19271891 Sed05g2954 Sed-Chr5:40315474 1.20E-51 wgd
Sed02g0688 Sed-Chr2:44720217 Sed05g2954 Sed-Chr5:40315474 7.10E-39 wgd
Sed04g2829 Sed-Chr4:40196822 Sed05g2954 Sed-Chr5:40315474 3.80E-45 wgd
Sed04g1274 Sed-Chr4:26722099 Sed05g2954 Sed-Chr5:40315474 6.00E-38 wgd
Sed05g2954 Sed-Chr5:40315474 Sed07g2483 Sed-Chr7:40537389 7.50E-38 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g2154 . 12 166 C2C2-Dof Transcription Factor Family AT1G29160 55.2 3.1e-41 166.0
Sed10g0236 . 6 155 C2C2-Dof Transcription Factor Family AT1G29160 54.5 2.6e-40 162.9
Sed01g2154 . 12 166 C2C2-Dof Transcription Factor Family AT2G34140 54.7 4.2e-43 172.2
Sed10g0236 . 6 155 C2C2-Dof Transcription Factor Family AT2G34140 53.4 6.9e-38 154.8
Sed04g1274 . 1 127 C2C2-Dof Transcription Factor Family AT2G37590 63.8 1.4e-39 161.4
Sed03g0078 . 1 131 C2C2-Dof Transcription Factor Family AT2G37590 63.8 7.1e-39 159.1
Sed01g2759 . 1 135 C2C2-Dof Transcription Factor Family AT2G37590 65.7 2.7e-38 157.1
Sed01g1076 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 55.5 1.5e-36 151.4
Sed08g0219 . 102 453 C2C2-Dof Transcription Factor Family AT3G47500 52.4 8.0e-86 315.5
Sed01g1076 . 1 133 C2C2-Dof Transcription Factor Family AT5G02460 58.3 7.0e-41 166.0
Sed13g1381 . 1 116 C2C2-Dof Transcription Factor Family AT5G02460 58.1 1.0e-39 162.2
Sed13g1380 . 1 124 C2C2-Dof Transcription Factor Family AT5G02460 57.2 4.3e-38 156.8
Sed01g2759 . 1 135 C2C2-Dof Transcription Factor Family AT5G02460 64.6 2.8e-37 154.1
Sed05g2954 . 46 122 C2C2-Dof Transcription Factor Family AT5G02460 88.3 1.8e-36 151.4
Sed03g0078 . 1 131 C2C2-Dof Transcription Factor Family AT5G02460 62.6 2.3e-36 151.0
Sed13g1380 . 27 198 C2C2-Dof Transcription Factor Family AT3G55370 50.8 1.6e-39 161.4
Sed13g1381 . 19 190 C2C2-Dof Transcription Factor Family AT3G55370 50.8 1.6e-39 161.4
Sed04g1274 . 48 133 C2C2-Dof Transcription Factor Family AT3G55370 76.7 1.7e-36 151.4
Sed08g0300 . 28 302 C2C2-Dof Transcription Factor Family AT5G60850 50.2 8.6e-47 185.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013041 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 0 1 1 2 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38667 PF02701 zf-Dof 5.40E-33 No_clan Sed TF