Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2954 ATGGCTCACTCTAATTCTATTCCAATCTTCTTAGATCCCCCAAATTGGCACCAGCCCCAAACAAATGATGATCACAATCCAGACCCACGTCCGCTGCCGGCGTTTCTCCCGCCACCGCCACCTATGACGGCTCATGGAGGCGGAGTTCGGCCGGGTTCTATGGCGTATAGAGCCCGGCTGGCAATGATACCTCTGCCGGAGGTGGCGCTGAAATGTCCACGTTGTGATTCTACAAACACAAAATTCTGTTACTTCAATAATTACAGCCTTTCTCAGCCGAGACACTTCTGTAAAGCCTGCCGCCGGTACTGGACTCGCGGCGGCGCTCTTAGAAATGTTCCCGTCGGCGGAGGGTTTCGTAAGAACAAGAAGAAGAAGAAATCTAACCAATCCAAATCTCCAATTGCCAATCAAACTGAAATGGGCAATTCAAGATCAATGGATGGTACAATAATCTCAACAAGCAATAACATTGAAAACACCACAAATTCAATGAGCCATTTCCCATCACAACCATTACATTTACCTTCAATTCCATCTCTTCAACGCAATCTCTCTCGTTTTGGAGCTCCACCAAACAACTCAGCCCTCAACTTCGCCGGAATTCACATCGGAAACATAAATTCCGGCAGGGAATTGGACCAATGGCAGCAGCAACCGCCGAGGTTCATCGTCGAACCACCGGCCACCGCCACCGCATACCCTCAAAGCCTTGAAACCGAAGCCAACAACTTTGGCCACAACACACCATCATCTTTACAATATAATTGTCACCAACAACTTCAGAATTCGACACCCTTTTCGAGAATTCCGATGAAAAATGAAGAACAAGTAATTTTATCGAACTTCTTACGACCAGCTGATCAAAACAGCCACTTTTGGGGAAATGATCATCAAAGTTCATGGACGGATTTATCAGCTCTTAGCTCATCTTCAAGCAGCCATCTTTTGTAA 954 46.54 MAHSNSIPIFLDPPNWHQPQTNDDHNPDPRPLPAFLPPPPPMTAHGGGVRPGSMAYRARLAMIPLPEVALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGFRKNKKKKKSNQSKSPIANQTEMGNSRSMDGTIISTSNNIENTTNSMSHFPSQPLHLPSIPSLQRNLSRFGAPPNNSALNFAGIHIGNINSGRELDQWQQQPPRFIVEPPATATAYPQSLETEANNFGHNTPSSLQYNCHQQLQNSTPFSRIPMKNEEQVILSNFLRPADQNSHFWGNDHQSSWTDLSALSSSSSSHLL 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40315474 40317450 + Sed0025776.1 Sed05g2954 715580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2954 317 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 67 236 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2954 317 MobiDBLite consensus disorder prediction 114 155 - -
Sed05g2954 317 MobiDBLite consensus disorder prediction 131 155 - -
Sed05g2954 317 ProSitePatterns Zinc finger Dof-type signature. 72 108 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed05g2954 317 ProSiteProfiles Zinc finger Dof-type profile. 70 124 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed05g2954 317 MobiDBLite consensus disorder prediction 30 45 - -
Sed05g2954 317 MobiDBLite consensus disorder prediction 11 50 - -
Sed05g2954 317 Pfam Dof domain, zinc finger 69 124 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2954 Sed-Chr5:40315474 Sed13g1381 Sed-Chr13:19271891 1.10E-49 dispersed
Sed01g1076 Sed-Chr1:8089939 Sed05g2954 Sed-Chr5:40315474 1.00E-44 wgd
Sed01g0886 Sed-Chr1:6413816 Sed05g2954 Sed-Chr5:40315474 6.30E-111 wgd
Sed13g1380 Sed-Chr13:19271891 Sed05g2954 Sed-Chr5:40315474 1.20E-51 wgd
Sed02g0688 Sed-Chr2:44720217 Sed05g2954 Sed-Chr5:40315474 7.10E-39 wgd
Sed04g2829 Sed-Chr4:40196822 Sed05g2954 Sed-Chr5:40315474 3.80E-45 wgd
Sed04g1274 Sed-Chr4:26722099 Sed05g2954 Sed-Chr5:40315474 6.00E-38 wgd
Sed05g2954 Sed-Chr5:40315474 Sed07g2483 Sed-Chr7:40537389 7.50E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38667 PF02701 zf-Dof 5.40E-33 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2954 - - - 0.0