Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2955 ATGGAGGAGGAGATTGAGAACCATGGCAGCTCGATTCGGAGTTTGATCGACTTGGTGAACGATGTAGCTTCAATCTCCGATTATAGGTTCGCGGTCAAGAAACAGTATTCGAATTTAGGTAGGCGACTGAAGCTGTTGATCCCGATGTTTGAGGAGATGAAGGATATGAAGCAGGCGCTGCCGGAAAATACCGTCACCGCCCTTGCTTCGTTGAAGAAAGCTCTTGAATCGACCAAGGAGTTGCTTACCCTTGGCACCGAGGGGAGCAAGATTTGTCTGGCCATGGAGAGAGATCAAATTTTGAATCAATTTCACGAGGTGTCAGCAAGACTAGAGCAAGCACTAAATGAAATTTCTCATGAACATCTCGATATATCTGATGAAGTTAAGGAACAGGTTGAGCTTGTTCTCTCTCAATTCAAAAGAGCTAAAGGAAGGATTGATACACAAGACGACGAGCTTTATGTTAACCTCCACTCTCTCTATGACAACAAGGATTCTGCTTCAGATCCTTCTGTCTTGAAGGGACTGGCTGAGAAGTTGCAGCTAATGAATATAGATGATCTTACTCAAGAGTCTCTTGCTTTACATGAAATGGTTTCGGCTAGCAATGGGGATCCAGGGGGGAGACTTGAGAAAATGTCAATACTATTGAAGAAAATAAAAGATTTTATGCTAACTGAAAACCCTGAAATTGGTGTTTCTTCAAAAGAACAAACGACTGCTGGGAAGAAAGATATATCTTCCGTTGACATACCTGAAGATTTTCGGTGCCCCATATCCCTAGATTTGATGAAAGATCCTGTCATTGTCTCCACTGGACAGACCTATGAACGTACTTTCATCGAGAAGTGGCTGGCAGATGGACACTTGACATGCCCAAAAACTCAACAAGTTCTCACCAGCAAAGTTCTAACACCAAATTATGTTCTACGCAGTCTTATAGGTCAATGGTGTGAGACTAATGGGATCGAACTACCACAACGTTCCAGCAGTTCTCAGCCCAGTGAATTGATGACTCCTGCTGAGCGCTCTAAGTATGAAACTCTACTCCAAAAACTCACATCGAGTAACATTGAAGACAAGCGATCTGCTGCTGGCGAGATTCGCCTATTAGCCAAACGCAATGCAAATAACCGTGTGGCCATTGCTGAAGCTGGTGTAATCCCTCCTCTTGTCAACCTCCTTTTAACAACAGACCCCCTCACTCAAGAACATGCCGTGACAGCATTGCTAAACCTTTCAATTTGTGACAATAATAAGAGAATTATCATGTCCTGTAGGGCAGCACCTGGCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCAGCCACCCTTTTCAGCCTTTCTGTTGTCGACGAATATAAAATAACGATTGGCGCATCAGGAGCCATTCCACCACTTATTGCACTGCTCAATGAAGGTACTCAAAGGGGGAAGAAGGACGCTGCAACCGCTCTTTTCAACTTGTGTTTCTACCAAGGGAACAAGATAAAGGCAGTCAGGGGTGGTGTTGTTACCATTCTGATGCAGCTGTTGACAGAATCTAGAATAGGGATGGTAGATGAGGCCCTGGCAATTTTAGCCATACTAGCCAGCAATTCTGAAGGACGGGCCGCCATCGGAGCAGCCGAATCAGTCCCCGTTTTACTAGATTTCATTGCGACAGGGTCCCCTAGGAATAGAGAAAATGCAGCTGCAGTTTTGGTGTACCTTTGTTCAGGAGACAAGCGACATCTTGTGGAAGCAAAAGAGCTTGGAGCCATTCGTTTGCTTACAGATTTGGCAGAAAATGGCACAGATAGAGGTAAACGAAAAGCGACACAATTGCTTGACCAAATAACCAGGTATATAGAGCAGCAGAAAGAGGCCGAGGCCGAGACTGAGGCTCAATCACAATCTCAAACATCCCCGTTGCTGCTGCCACCTTTCGCAATCGGCAATGTCGAAAGCTGA 1974 45.19 MEEEIENHGSSIRSLIDLVNDVASISDYRFAVKKQYSNLGRRLKLLIPMFEEMKDMKQALPENTVTALASLKKALESTKELLTLGTEGSKICLAMERDQILNQFHEVSARLEQALNEISHEHLDISDEVKEQVELVLSQFKRAKGRIDTQDDELYVNLHSLYDNKDSASDPSVLKGLAEKLQLMNIDDLTQESLALHEMVSASNGDPGGRLEKMSILLKKIKDFMLTENPEIGVSSKEQTTAGKKDISSVDIPEDFRCPISLDLMKDPVIVSTGQTYERTFIEKWLADGHLTCPKTQQVLTSKVLTPNYVLRSLIGQWCETNGIELPQRSSSSQPSELMTPAERSKYETLLQKLTSSNIEDKRSAAGEIRLLAKRNANNRVAIAEAGVIPPLVNLLLTTDPLTQEHAVTALLNLSICDNNKRIIMSCRAAPGIVHVLKWGSMEARENAAATLFSLSVVDEYKITIGASGAIPPLIALLNEGTQRGKKDAATALFNLCFYQGNKIKAVRGGVVTILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAAESVPVLLDFIATGSPRNRENAAAVLVYLCSGDKRHLVEAKELGAIRLLTDLAENGTDRGKRKATQLLDQITRYIEQQKEAEAETEAQSQSQTSPLLLPPFAIGNVES 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40327452 40332875 - Sed0015123.1 Sed05g2955 715581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2955 657 Pfam Mixed lineage kinase domain-like N-terminal domain 32 120 IPR054000 -
Sed05g2955 657 Coils Coil 613 633 - -
Sed05g2955 657 Gene3D - 486 642 IPR011989 -
Sed05g2955 657 Gene3D - 342 483 IPR011989 -
Sed05g2955 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 387 425 IPR000225 GO:0005515(InterPro)
Sed05g2955 657 Pfam Armadillo/beta-catenin-like repeat 459 497 IPR000225 GO:0005515(InterPro)
Sed05g2955 657 Pfam Armadillo/beta-catenin-like repeat 376 415 IPR000225 GO:0005515(InterPro)
Sed05g2955 657 CDD RING-Ubox_PUB 253 305 IPR045210 -
Sed05g2955 657 PANTHER U BOX DOMAIN-CONTAINING 32 620 - -
Sed05g2955 657 SMART Ubox_2 255 318 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed05g2955 657 Gene3D - 9 121 IPR036537 GO:0007166(InterPro)
Sed05g2955 657 ProSiteProfiles U-box domain profile. 251 325 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed05g2955 657 SMART arm_5 417 457 IPR000225 GO:0005515(InterPro)
Sed05g2955 657 SMART arm_5 499 539 IPR000225 GO:0005515(InterPro)
Sed05g2955 657 SMART arm_5 582 622 IPR000225 GO:0005515(InterPro)
Sed05g2955 657 SMART arm_5 540 580 IPR000225 GO:0005515(InterPro)
Sed05g2955 657 SMART arm_5 458 498 IPR000225 GO:0005515(InterPro)
Sed05g2955 657 SMART arm_5 376 416 IPR000225 GO:0005515(InterPro)
Sed05g2955 657 CDD MLKL_NTD 33 141 - -
Sed05g2955 657 FunFam RING-type E3 ubiquitin transferase 330 627 - -
Sed05g2955 657 Pfam U-box domain 252 322 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed05g2955 657 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 325 IPR013083 -
Sed05g2955 657 SUPERFAMILY RING/U-box 246 327 - -
Sed05g2955 657 Coils Coil 97 117 - -
Sed05g2955 657 FunFam RING-type E3 ubiquitin transferase 8 121 - -
Sed05g2955 657 FunFam RING-type E3 ubiquitin transferase 251 325 - -
Sed05g2955 657 SUPERFAMILY ARM repeat 348 629 IPR016024 -
Sed05g2955 657 MobiDBLite consensus disorder prediction 633 647 - -
Sed05g2955 657 MobiDBLite consensus disorder prediction 627 657 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2955 Sed-Chr5:40327452 Sed13g1383 Sed-Chr13:19282203 1.00E-105 dispersed
Sed10g0566 Sed-Chr10:3658583 Sed05g2955 Sed-Chr5:40327452 1.10E-13 dispersed
Sed06g2015 Sed-Chr6:44267168 Sed05g2955 Sed-Chr5:40327452 2.30E-123 transposed
Sed10g1203 Sed-Chr10:23001739 Sed05g2955 Sed-Chr5:40327452 2.40E-13 transposed
Sed01g1077 Sed-Chr1:8109319 Sed05g2955 Sed-Chr5:40327452 4.00E-142 wgd
Sed13g1382 Sed-Chr13:19282203 Sed05g2955 Sed-Chr5:40327452 8.80E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2955 K27628 - csv:101221150 1031.55