Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g2955 | ATGGAGGAGGAGATTGAGAACCATGGCAGCTCGATTCGGAGTTTGATCGACTTGGTGAACGATGTAGCTTCAATCTCCGATTATAGGTTCGCGGTCAAGAAACAGTATTCGAATTTAGGTAGGCGACTGAAGCTGTTGATCCCGATGTTTGAGGAGATGAAGGATATGAAGCAGGCGCTGCCGGAAAATACCGTCACCGCCCTTGCTTCGTTGAAGAAAGCTCTTGAATCGACCAAGGAGTTGCTTACCCTTGGCACCGAGGGGAGCAAGATTTGTCTGGCCATGGAGAGAGATCAAATTTTGAATCAATTTCACGAGGTGTCAGCAAGACTAGAGCAAGCACTAAATGAAATTTCTCATGAACATCTCGATATATCTGATGAAGTTAAGGAACAGGTTGAGCTTGTTCTCTCTCAATTCAAAAGAGCTAAAGGAAGGATTGATACACAAGACGACGAGCTTTATGTTAACCTCCACTCTCTCTATGACAACAAGGATTCTGCTTCAGATCCTTCTGTCTTGAAGGGACTGGCTGAGAAGTTGCAGCTAATGAATATAGATGATCTTACTCAAGAGTCTCTTGCTTTACATGAAATGGTTTCGGCTAGCAATGGGGATCCAGGGGGGAGACTTGAGAAAATGTCAATACTATTGAAGAAAATAAAAGATTTTATGCTAACTGAAAACCCTGAAATTGGTGTTTCTTCAAAAGAACAAACGACTGCTGGGAAGAAAGATATATCTTCCGTTGACATACCTGAAGATTTTCGGTGCCCCATATCCCTAGATTTGATGAAAGATCCTGTCATTGTCTCCACTGGACAGACCTATGAACGTACTTTCATCGAGAAGTGGCTGGCAGATGGACACTTGACATGCCCAAAAACTCAACAAGTTCTCACCAGCAAAGTTCTAACACCAAATTATGTTCTACGCAGTCTTATAGGTCAATGGTGTGAGACTAATGGGATCGAACTACCACAACGTTCCAGCAGTTCTCAGCCCAGTGAATTGATGACTCCTGCTGAGCGCTCTAAGTATGAAACTCTACTCCAAAAACTCACATCGAGTAACATTGAAGACAAGCGATCTGCTGCTGGCGAGATTCGCCTATTAGCCAAACGCAATGCAAATAACCGTGTGGCCATTGCTGAAGCTGGTGTAATCCCTCCTCTTGTCAACCTCCTTTTAACAACAGACCCCCTCACTCAAGAACATGCCGTGACAGCATTGCTAAACCTTTCAATTTGTGACAATAATAAGAGAATTATCATGTCCTGTAGGGCAGCACCTGGCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCAGCCACCCTTTTCAGCCTTTCTGTTGTCGACGAATATAAAATAACGATTGGCGCATCAGGAGCCATTCCACCACTTATTGCACTGCTCAATGAAGGTACTCAAAGGGGGAAGAAGGACGCTGCAACCGCTCTTTTCAACTTGTGTTTCTACCAAGGGAACAAGATAAAGGCAGTCAGGGGTGGTGTTGTTACCATTCTGATGCAGCTGTTGACAGAATCTAGAATAGGGATGGTAGATGAGGCCCTGGCAATTTTAGCCATACTAGCCAGCAATTCTGAAGGACGGGCCGCCATCGGAGCAGCCGAATCAGTCCCCGTTTTACTAGATTTCATTGCGACAGGGTCCCCTAGGAATAGAGAAAATGCAGCTGCAGTTTTGGTGTACCTTTGTTCAGGAGACAAGCGACATCTTGTGGAAGCAAAAGAGCTTGGAGCCATTCGTTTGCTTACAGATTTGGCAGAAAATGGCACAGATAGAGGTAAACGAAAAGCGACACAATTGCTTGACCAAATAACCAGGTATATAGAGCAGCAGAAAGAGGCCGAGGCCGAGACTGAGGCTCAATCACAATCTCAAACATCCCCGTTGCTGCTGCCACCTTTCGCAATCGGCAATGTCGAAAGCTGA | 1974 | 45.19 | MEEEIENHGSSIRSLIDLVNDVASISDYRFAVKKQYSNLGRRLKLLIPMFEEMKDMKQALPENTVTALASLKKALESTKELLTLGTEGSKICLAMERDQILNQFHEVSARLEQALNEISHEHLDISDEVKEQVELVLSQFKRAKGRIDTQDDELYVNLHSLYDNKDSASDPSVLKGLAEKLQLMNIDDLTQESLALHEMVSASNGDPGGRLEKMSILLKKIKDFMLTENPEIGVSSKEQTTAGKKDISSVDIPEDFRCPISLDLMKDPVIVSTGQTYERTFIEKWLADGHLTCPKTQQVLTSKVLTPNYVLRSLIGQWCETNGIELPQRSSSSQPSELMTPAERSKYETLLQKLTSSNIEDKRSAAGEIRLLAKRNANNRVAIAEAGVIPPLVNLLLTTDPLTQEHAVTALLNLSICDNNKRIIMSCRAAPGIVHVLKWGSMEARENAAATLFSLSVVDEYKITIGASGAIPPLIALLNEGTQRGKKDAATALFNLCFYQGNKIKAVRGGVVTILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAAESVPVLLDFIATGSPRNRENAAAVLVYLCSGDKRHLVEAKELGAIRLLTDLAENGTDRGKRKATQLLDQITRYIEQQKEAEAETEAQSQSQTSPLLLPPFAIGNVES | 657 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 40327452 | 40332875 | - | Sed0015123.1 | Sed05g2955 | 715581 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g2955 | 657 | Pfam | Mixed lineage kinase domain-like N-terminal domain | 32 | 120 | IPR054000 | - | |
Sed05g2955 | 657 | Coils | Coil | 613 | 633 | - | - | |
Sed05g2955 | 657 | Gene3D | - | 486 | 642 | IPR011989 | - | |
Sed05g2955 | 657 | Gene3D | - | 342 | 483 | IPR011989 | - | |
Sed05g2955 | 657 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 387 | 425 | IPR000225 | GO:0005515(InterPro) | |
Sed05g2955 | 657 | Pfam | Armadillo/beta-catenin-like repeat | 459 | 497 | IPR000225 | GO:0005515(InterPro) | |
Sed05g2955 | 657 | Pfam | Armadillo/beta-catenin-like repeat | 376 | 415 | IPR000225 | GO:0005515(InterPro) | |
Sed05g2955 | 657 | CDD | RING-Ubox_PUB | 253 | 305 | IPR045210 | - | |
Sed05g2955 | 657 | PANTHER | U BOX DOMAIN-CONTAINING | 32 | 620 | - | - | |
Sed05g2955 | 657 | SMART | Ubox_2 | 255 | 318 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed05g2955 | 657 | Gene3D | - | 9 | 121 | IPR036537 | GO:0007166(InterPro) | |
Sed05g2955 | 657 | ProSiteProfiles | U-box domain profile. | 251 | 325 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed05g2955 | 657 | SMART | arm_5 | 417 | 457 | IPR000225 | GO:0005515(InterPro) | |
Sed05g2955 | 657 | SMART | arm_5 | 499 | 539 | IPR000225 | GO:0005515(InterPro) | |
Sed05g2955 | 657 | SMART | arm_5 | 582 | 622 | IPR000225 | GO:0005515(InterPro) | |
Sed05g2955 | 657 | SMART | arm_5 | 540 | 580 | IPR000225 | GO:0005515(InterPro) | |
Sed05g2955 | 657 | SMART | arm_5 | 458 | 498 | IPR000225 | GO:0005515(InterPro) | |
Sed05g2955 | 657 | SMART | arm_5 | 376 | 416 | IPR000225 | GO:0005515(InterPro) | |
Sed05g2955 | 657 | CDD | MLKL_NTD | 33 | 141 | - | - | |
Sed05g2955 | 657 | FunFam | RING-type E3 ubiquitin transferase | 330 | 627 | - | - | |
Sed05g2955 | 657 | Pfam | U-box domain | 252 | 322 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed05g2955 | 657 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 251 | 325 | IPR013083 | - | |
Sed05g2955 | 657 | SUPERFAMILY | RING/U-box | 246 | 327 | - | - | |
Sed05g2955 | 657 | Coils | Coil | 97 | 117 | - | - | |
Sed05g2955 | 657 | FunFam | RING-type E3 ubiquitin transferase | 8 | 121 | - | - | |
Sed05g2955 | 657 | FunFam | RING-type E3 ubiquitin transferase | 251 | 325 | - | - | |
Sed05g2955 | 657 | SUPERFAMILY | ARM repeat | 348 | 629 | IPR016024 | - | |
Sed05g2955 | 657 | MobiDBLite | consensus disorder prediction | 633 | 647 | - | - | |
Sed05g2955 | 657 | MobiDBLite | consensus disorder prediction | 627 | 657 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g2955 | Sed-Chr5:40327452 | Sed13g1383 | Sed-Chr13:19282203 | 1.00E-105 | dispersed | |
Sed10g0566 | Sed-Chr10:3658583 | Sed05g2955 | Sed-Chr5:40327452 | 1.10E-13 | dispersed | |
Sed06g2015 | Sed-Chr6:44267168 | Sed05g2955 | Sed-Chr5:40327452 | 2.30E-123 | transposed | |
Sed10g1203 | Sed-Chr10:23001739 | Sed05g2955 | Sed-Chr5:40327452 | 2.40E-13 | transposed | |
Sed01g1077 | Sed-Chr1:8109319 | Sed05g2955 | Sed-Chr5:40327452 | 4.00E-142 | wgd | |
Sed13g1382 | Sed-Chr13:19282203 | Sed05g2955 | Sed-Chr5:40327452 | 8.80E-155 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g2955 | K27628 | - | csv:101221150 | 1031.55 |