Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2962 ATGGGTAACGGGATTGGAAAATTCGGCGTTTGCTTCACCGGAATCGGCGACGGTCGGCGGCGGCGGCCGGTTCTATCGAACCCACTCGACGAAGGGCTCGGCCACTCGTTCTGCTACGTTCGGCCGGACCCTTTGCGCCTTTCCTCTTCAAAAGTTCACTCCGACGAAACCACCACTTTCCGATCAATCTCCGGCGCCTCTGTAAGTGCAAACACATCGACGCCGCTTTCAACGGCTCTAATTGATTTGTATTCCTACAACAGCATCGATCGAGCGGCGGCGTTTGAGAGCTCGACCTCTTTTGCTTCAATCCCTTTGCAGCCAATCCCTAGAAACATGATGAATTCGGGTCCGATCCCGAGTTCGGGTCCGATAGAACACGGGTTCTTATCGGGCCCGATTGAGCGAGGGTTGATGTCGGGTCCGTTGGATCGGGGGATCTTTTCGGGTCCGCTTGATAATCCGGTTGCGTGTAGTGAGTTCAAGAGGAGTTTCTCTCATGGAGGAGGGATTAATCCCAGATCTAGAAAAAGCCGGTTGATTCGGGTTCTGAAACGGGTTGTTTCGAAGTCGATTCATCGAGGGCAGAATTCGATTGTGGCTCCGATTAAACCCGGGAAAGAACCGGATTGGGTGGTTTTGTCTGAGAAGCATAATGAGAATTTGACTGTGAGTAGTTTGAATTTCAGTAGTGAAGGGAATTTGGATGATGATGATTCAATGGAGAGTCAAAATCTGCAGTGGGCTCAAGGAAAAGCAGGGGAAGATCGAGTTCATGTTGTTGTTTCTGATGAACATGGGTGGGTTTTTGTTGGGATTTATGATGGATTTAATGGTCCTGATGCTCCTGATTATCTTTTGTCCAATTTGTATTCATCTGTTCATAAAGAGCTCAAAGGTTTGTTGTGGGACGAAAAGCTCGATTCGATCCGTGTCACCGATCCAGCCATTTCCCCTGATCGATTTGTGAATCCTAGAGATTCTTCACCGGAGAGTTGTTCTCATTGTGTTAATCAAGAGAATCATCCTTGTGCTAGTGGAAATGGGAATTCTGGGTCGAACTCGAGAAGGCGAAAGGGTAAGGATTCGAGAGGGAAGTTTAGAGGAGCTGCTGAGAAGTGGGAGGATAATCAGCAGTGGTGGAAGTGTGAATGGGACCGGGAACGATTGGAGCTTGACCGGAGGTTAAAGGAGCAGTTGAATCGATCTGGGTCGGTTGGTGGTTCGAGGTCGATTAATCATTCAGATGTTTTGAAAGCCTTGTCTCAGGCATTGAAGAAAACAGAGGAGTCCTATTTGGATATTGCAGACAAGATGCTTGATGAAAATCCTGAACTGGCTTTGATGGGTTCTTGTGTGCTTGTGATGCTTATGAAGGGAGATGAAGTTTATGTGATGAATGTTGGCGATAGCCGAGCTGTTTTAGCGCAGAAGGCTGAACCCGATTATTGGCTCGGGAAGATTCGACAGGACTTGGAGAGGATTAATGAAGAGCCAGTTCATGACATCGAAGCATTAGATAGTGATAGAGCATTCATCTCAGCTAACCTTAGTGCTTTTCAGCTTTCCATTGATCACAGTACTAGTGTTGATGAGGAAGTTCAGAGAATTAAACATGAGCACCCTGATGATGCCGGTTCCGTGATGAACGACCGTGTGAAAGGCTCGTTGAAGGTTACTCGGGCGTTTGGTGCTGGTTTTCTCAAACAGCCTAAATGGAACAATGCGCTGTTGGAGATGTTTCGAATCGACTACGTCGGTAATTTGCCATACATCAATTGTTTACCATCTCTCTATCACCACAGATTGGGACCAAAAGACAGGTTTTTGATACTATCATCTGACGGACTCTACCAGTACTTCACAAACGAGGAAGCTGTTTCTGAAGTTGAACTTTTCATCACATTGCAACCCGAAGGAGACCCAGCTCAGCATCTGGTTGAACTACTGTTGTTTCGGGCTGCAAAGCGAGCTGGTATGGATTTCCATGAGTTACTCGAAATACCACAGGGCGATAGGAGAAAATACCACGACGACGTATCGATCATTGTAATTTCATTAGAAGGGAGGATCTGGAGATCCTGTGTATAA 2091 46.92 MGNGIGKFGVCFTGIGDGRRRRPVLSNPLDEGLGHSFCYVRPDPLRLSSSKVHSDETTTFRSISGASVSANTSTPLSTALIDLYSYNSIDRAAAFESSTSFASIPLQPIPRNMMNSGPIPSSGPIEHGFLSGPIERGLMSGPLDRGIFSGPLDNPVACSEFKRSFSHGGGINPRSRKSRLIRVLKRVVSKSIHRGQNSIVAPIKPGKEPDWVVLSEKHNENLTVSSLNFSSEGNLDDDDSMESQNLQWAQGKAGEDRVHVVVSDEHGWVFVGIYDGFNGPDAPDYLLSNLYSSVHKELKGLLWDEKLDSIRVTDPAISPDRFVNPRDSSPESCSHCVNQENHPCASGNGNSGSNSRRRKGKDSRGKFRGAAEKWEDNQQWWKCEWDRERLELDRRLKEQLNRSGSVGGSRSINHSDVLKALSQALKKTEESYLDIADKMLDENPELALMGSCVLVMLMKGDEVYVMNVGDSRAVLAQKAEPDYWLGKIRQDLERINEEPVHDIEALDSDRAFISANLSAFQLSIDHSTSVDEEVQRIKHEHPDDAGSVMNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYVGNLPYINCLPSLYHHRLGPKDRFLILSSDGLYQYFTNEEAVSEVELFITLQPEGDPAQHLVELLLFRAAKRAGMDFHELLEIPQGDRRKYHDDVSIIVISLEGRIWRSCV 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40379294 40382580 - Sed0017295.1 Sed05g2962 715588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2962 696 SMART PP2C_4 239 685 IPR001932 -
Sed05g2962 696 MobiDBLite consensus disorder prediction 316 370 - -
Sed05g2962 696 SUPERFAMILY PP2C-like 252 688 IPR036457 -
Sed05g2962 696 ProSiteProfiles PPM-type phosphatase domain profile. 238 687 IPR001932 -
Sed05g2962 696 PANTHER PROTEIN PHOSPHATASE 2C 231 687 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Sed05g2962 696 Pfam Protein phosphatase 2C 510 637 IPR001932 -
Sed05g2962 696 Pfam Protein phosphatase 2C 420 480 IPR001932 -
Sed05g2962 696 CDD PP2Cc 413 687 IPR001932 -
Sed05g2962 696 FunFam probable protein phosphatase 2C 4 213 692 - -
Sed05g2962 696 Gene3D - 216 692 IPR036457 -
Sed05g2962 696 MobiDBLite consensus disorder prediction 325 354 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0881 Sed-Chr1:6381665 Sed05g2962 Sed-Chr5:40379294 3.90E-286 dispersed
Sed01g0882 Sed-Chr1:6381665 Sed05g2962 Sed-Chr5:40379294 1.80E-212 dispersed
Sed05g2962 Sed-Chr5:40379294 Sed14g0489 Sed-Chr14:4825772 1.60E-162 dispersed
Sed04g0819 Sed-Chr4:6845396 Sed05g2962 Sed-Chr5:40379294 9.30E-135 transposed
Sed01g0880 Sed-Chr1:6381665 Sed05g2962 Sed-Chr5:40379294 0.00E+00 wgd
Sed14g0488 Sed-Chr14:4825772 Sed05g2962 Sed-Chr5:40379294 3.60E-183 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2962 - - - 0.0