Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2978 ATGGCGGCCATTGTTACTATCTCCATAACTTCTCTAATCCTCCAACTTTTCTCCGCCGCCGTGGAAGCAAGAATCCCGGGTGTATACTCCGGCGGCGCCTGGCAGAGCGCCCACGCCACCTTCTACGGCGGCTCCGACGCATCCGGCACAATGGGCGGAGCATGTGGGTACGGGAATTTGTACAGCCAAGGGTACGGAACGAGCACGGCGGCGCTGAGCACAGCTCTGTTCAACAATGGGCAGAGCTGTGGCGCTTGCTTTGAAATTAAGTGCGCGAATGACCCCAAATGGTGCCATTCTGGCAGCCCTTCCATCTTGATTACCGCTACTAATTTCTGCCCTCCTAATTATGCTCTTCCTAACGACAATGGCGGCTGGTGTAACCCTCCCCGCACCCATTTTGACCTCGCCATGCCCATGTTCCTTAGAATCGCCGAATACCGCGCCGGAATCGTCCCCGTCGCTTACCGCCGAGTGCCATGCCGGAAACAAGGCGGAATAAGGTTCACAATCAACGGCTTCCGTTACTTCAACTTAGTTCTAATCAGCAACGTGGCGGGTGCAGGGGATATCGTGAGGGTTAGCGTGAAAGGAACGAAGACCGGGTGGATGAGCATGACAAGAAACTGGGGGCAAAATTGGCAATCCAACGCCGTGTTGGTGGGCCAGGCCCTGTCCTTCCGAGTTACGGGCAGTGACCGCCGGACCTCAACCTCCTGGAACATGGTGCCCGCGAATTGGCAGTTCGGTCAAACTTTCACCGGCAAAAACTTCCGCGTTTAA 783 55.94 MAAIVTISITSLILQLFSAAVEARIPGVYSGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGQSCGACFEIKCANDPKWCHSGSPSILITATNFCPPNYALPNDNGGWCNPPRTHFDLAMPMFLRIAEYRAGIVPVAYRRVPCRKQGGIRFTINGFRYFNLVLISNVAGAGDIVRVSVKGTKTGWMSMTRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPANWQFGQTFTGKNFRV 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40441191 40443338 - Sed0017428.1 Sed05g2978 715604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2978 260 Pfam Expansin C-terminal domain 167 244 IPR007117 -
Sed05g2978 260 SUPERFAMILY Barwin-like endoglucanases 33 184 IPR036908 -
Sed05g2978 260 Gene3D - 21 162 IPR036908 -
Sed05g2978 260 Pfam Lytic transglycolase 69 156 IPR009009 -
Sed05g2978 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 166 IPR007112 -
Sed05g2978 260 FunFam Expansin 23 162 - -
Sed05g2978 260 PRINTS Expansin signature 165 177 IPR002963 GO:0009664(InterPro)
Sed05g2978 260 PRINTS Expansin signature 212 233 IPR002963 GO:0009664(InterPro)
Sed05g2978 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664(InterPro)
Sed05g2978 260 PRINTS Expansin signature 64 78 IPR002963 GO:0009664(InterPro)
Sed05g2978 260 PRINTS Expansin signature 124 141 IPR002963 GO:0009664(InterPro)
Sed05g2978 260 PRINTS Expansin signature 177 198 IPR002963 GO:0009664(InterPro)
Sed05g2978 260 PRINTS Expansin signature 141 154 IPR002963 GO:0009664(InterPro)
Sed05g2978 260 PRINTS Expansin signature 91 102 IPR002963 GO:0009664(InterPro)
Sed05g2978 260 PRINTS Expansin signature 105 115 IPR002963 GO:0009664(InterPro)
Sed05g2978 260 CDD DPBB_EXPA_N 34 161 - -
Sed05g2978 260 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576(InterPro)
Sed05g2978 260 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576(InterPro)
Sed05g2978 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576(InterPro)
Sed05g2978 260 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576(InterPro)
Sed05g2978 260 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576(InterPro)
Sed05g2978 260 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576(InterPro)
Sed05g2978 260 PANTHER EXPANSIN-A15 19 258 IPR002963 GO:0009664(InterPro)
Sed05g2978 260 SUPERFAMILY PHL pollen allergen 163 255 IPR036749 -
Sed05g2978 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 255 IPR007117 -
Sed05g2978 260 FunFam Expansin 166 258 - -
Sed05g2978 260 SMART dpbb_1 69 156 IPR007112 -
Sed05g2978 260 Gene3D - 166 258 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0096 Sed-Chr3:584840 Sed05g2978 Sed-Chr5:40441191 5.50E-119 dispersed
Sed05g2978 Sed-Chr5:40441191 Sed06g1515 Sed-Chr6:39836514 5.00E-104 dispersed
Sed03g0910 Sed-Chr3:5610947 Sed05g2978 Sed-Chr5:40441191 2.70E-73 transposed
Sed05g0853 Sed-Chr5:6796719 Sed05g2978 Sed-Chr5:40441191 3.70E-69 transposed
Sed01g1092 Sed-Chr1:8212684 Sed05g2978 Sed-Chr5:40441191 3.30E-127 wgd
Sed13g1396 Sed-Chr13:19376925 Sed05g2978 Sed-Chr5:40441191 5.30E-130 wgd
Sed14g0493 Sed-Chr14:4867194 Sed05g2978 Sed-Chr5:40441191 3.20E-127 wgd
Sed04g2835 Sed-Chr4:40265268 Sed05g2978 Sed-Chr5:40441191 4.90E-128 wgd
Sed05g2978 Sed-Chr5:40441191 Sed07g2495 Sed-Chr7:40621356 9.00E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2978 - - - 0.0