Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2984 ATGGATCCCAACTTTCATGGTTTCCCAGATCGTGTTGTAGATTACAACTTCGATTCTCAAACCCCTTCAACCCAATTCCACGATCTTCCCAATCGCTCCTTTGATGGGTTCAGACCCACTTCTTCCAATCCATACCCAGAACTCGAAAACAGTTTTCAATTCAACCCCCCATCTCCAGATCTTCTTCCCTTCACCGTCCACAACCATTCCTTTGCCCCTTACGAATCAGACCCAATTCATATTTCTTCGCTGTCGAGTGATACGCCGGAAGGAGAGTCGTTTTCTGGGGTGGCGAGGTCAAGCTCGGATGGAGTGGCTTCTGGGTTTAGCCCTGGTGTTGACTCTTCTTCCTCCGACGAGACTGATTTCAAAGAAACTGTTTTGAAGTACATGAGCCAGATACTTATGGAAGAGAATTTGGAGGAGATGCCCTGCATGTTTTATGATCCTTTGGGCCTTAAACTTACGGAGAAATCTTTCTATGATGTTCTTGGTAAGAACTACCCTCCTTCACCGAATCAACCCCCCCTGGATTGCGAGAGTTCTGAAGATGTTTGTTGTGGAAGTGATGGCGATCCTGCTAGTAGTAATGTTAGTATTGACACCACCCATTCGCCTGATTCGCAATGGACGGTTGATCCCGGAGAACATAAGCCCTCAATACTTCCAAAACCTCGGTCGAATTTTGAGCTTAGTTCTGGGAATCAAAGCAGCCTCACTATTAATAATAGTCATGACCTGGTCACTGAGCTGTTGGCGCAGAATATCTTTAGTAATAGCACATCCATTTTGCAATATCAAAAGGGGTTGGAGGAGGCAAGTAAGTTTCTTCCAGTGGGTAATCAGCTGAATATTGATCTTGCCAGAAATTTATTGACAGGAGCAGCTTCTAAGGCAATGAATCATACAACGGAGAATGATACAAGGGAGAATTCACCAAATGGATGGAAGGGAAGGAAGAATCGAGAGCGTGAAGACGTGGACTTGGATTCGGAAGTGGAAGAAGGGAGGAGAAGCAAACAGGCAACCATTTACGACGACGAGGAAGAGTTATCGGAGATGTTCGATATGGTTTTACTTCATGATTGTGGAAATCAGACCTCTGCAAATGGTGGGTGTGGGGAATTTCAGTATAGAGGACAGCTTCATGGATCCATTGTTGAGAAAGCTCAGGAAAAGAAACAGGAGAAGAGAAAAGACTCTGTGGATTTGAGAAATCTTCTGATATTATGTGCACAAGCTGTGTCTTCTAGTGACAGTAAGATTGCTTATGAACTACTTAAGCAAATTAGGCAGCATTCTTCAACCACTGGGGATGGTTCCCAAAGAATAGCTCATTTTTTCGCTAATGCTCTCGAGGCTCGCATGGTTGGCACTGGCACAGGAAGCAGAATCTATTATGAATCACTTCTTCTAAGCAAGATTTCAGCAGCTGATATGTTGAAAGCCTACCAGGCACACTTTTCATCCTGCCCTTTTAAAAAACTCACCCTTTTTTTCATGGTTAAATCTATTTTGAAGGTTGCTGAGAAGGCTAAAAGTCTTCATGTTATTGATTTTGGCATTTGCTATGGTTTCCTATGGCCAATGTTAATTCAGTTTCTTGCACAACTACCCAATGGTCCTCCTAAGCTACGCATTACTGGTATAGATCATCCCCTCCCAGGATTTCGTCCAGCTGAAAAGATTGACGAGTCAGGTCGTCGTTTGGCAAAATACTGTGAGCGATTTAATGTTCCTTTTCAATATCAAGCCATAGCATCGCATAACTGGGAAACTATCCGAGTCCAGGAGTTCAAGCTCGATAGCAATGATGTGCTCGTGGTAAACTGTTTCTACAGGTTTAACAACTTACTCGATGAAACAGTCAAAGAAAGTAGTCCAAGGGACGTTGTTCTGCGTTTAATAAGGGAGCTGAATCCAAACATCTTTGTCCATTCTGTGGTTAATGGATCCTACAATGCACCCTTCTTCATAACACGATTCCGAGAGGCACTCTTCTACTTCTCTGCATTATTCGATACCTTAGACGTTAATCTACCCCGTGTAAGCGAAGAGAGGATGATGTTAGAGAGGGAGTTTCTCGGGCGGCAAATTATGAATGTAGTAGCATGTGAGGGTGCTGAGAGAGTTGAGAGGCCTGAAACCTATAAGCAGTGGCAGGTTCGGTGCATGAGGGCTGGTTTCAGGCAGCTTCCTTTGGACAAGGAGATCATGAACAAGTTTAGAATCAAGTTAGCATCTCACTACCACAAAGATTTCGTACTCGATGAAGACGATGGCTGGATGCTTCAAGGATGGAAAGGTCGTATTGTCTACGCTTCGTGTTGTTGGGTGCCAGCATAG 2346 44.03 MDPNFHGFPDRVVDYNFDSQTPSTQFHDLPNRSFDGFRPTSSNPYPELENSFQFNPPSPDLLPFTVHNHSFAPYESDPIHISSLSSDTPEGESFSGVARSSSDGVASGFSPGVDSSSSDETDFKETVLKYMSQILMEENLEEMPCMFYDPLGLKLTEKSFYDVLGKNYPPSPNQPPLDCESSEDVCCGSDGDPASSNVSIDTTHSPDSQWTVDPGEHKPSILPKPRSNFELSSGNQSSLTINNSHDLVTELLAQNIFSNSTSILQYQKGLEEASKFLPVGNQLNIDLARNLLTGAASKAMNHTTENDTRENSPNGWKGRKNREREDVDLDSEVEEGRRSKQATIYDDEEELSEMFDMVLLHDCGNQTSANGGCGEFQYRGQLHGSIVEKAQEKKQEKRKDSVDLRNLLILCAQAVSSSDSKIAYELLKQIRQHSSTTGDGSQRIAHFFANALEARMVGTGTGSRIYYESLLLSKISAADMLKAYQAHFSSCPFKKLTLFFMVKSILKVAEKAKSLHVIDFGICYGFLWPMLIQFLAQLPNGPPKLRITGIDHPLPGFRPAEKIDESGRRLAKYCERFNVPFQYQAIASHNWETIRVQEFKLDSNDVLVVNCFYRFNNLLDETVKESSPRDVVLRLIRELNPNIFVHSVVNGSYNAPFFITRFREALFYFSALFDTLDVNLPRVSEERMMLEREFLGRQIMNVVACEGAERVERPETYKQWQVRCMRAGFRQLPLDKEIMNKFRIKLASHYHKDFVLDEDDGWMLQGWKGRIVYASCCWVPA 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40472508 40475486 + Sed0002527.1 Sed05g2984 715610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2984 781 MobiDBLite consensus disorder prediction 83 120 - -
Sed05g2984 781 ProSiteProfiles GRAS family profile. 395 779 IPR005202 -
Sed05g2984 781 MobiDBLite consensus disorder prediction 312 340 - -
Sed05g2984 781 MobiDBLite consensus disorder prediction 299 340 - -
Sed05g2984 781 MobiDBLite consensus disorder prediction 172 220 - -
Sed05g2984 781 Pfam GRAS domain family 404 778 IPR005202 -
Sed05g2984 781 Coils Coil 387 407 - -
Sed05g2984 781 MobiDBLite consensus disorder prediction 83 117 - -
Sed05g2984 781 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 389 778 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Sed05g2984 781 MobiDBLite consensus disorder prediction 192 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1260 Sed-Chr4:26450420 Sed05g2984 Sed-Chr5:40472508 9.00E-159 dispersed
Sed04g1261 Sed-Chr4:26450420 Sed05g2984 Sed-Chr5:40472508 9.00E-159 dispersed
Sed05g2984 Sed-Chr5:40472508 Sed07g2856 Sed-Chr7:43319462 6.10E-57 dispersed
Sed10g0914 Sed-Chr10:7131592 Sed05g2984 Sed-Chr5:40472508 1.10E-42 transposed
Sed01g0841 Sed-Chr1:6144970 Sed05g2984 Sed-Chr5:40472508 1.70E-262 wgd
Sed01g1103 Sed-Chr1:8281312 Sed05g2984 Sed-Chr5:40472508 6.30E-151 wgd
Sed13g1411 Sed-Chr13:19473431 Sed05g2984 Sed-Chr5:40472508 1.50E-152 wgd
Sed04g1258 Sed-Chr4:26450420 Sed05g2984 Sed-Chr5:40472508 9.00E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38668 PF03514 GRAS 2.30E-108 CL0063 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2984 K27753 - csv:101203568 1082.78