Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3003 ATGGCTTTAAACCTTCGTCAAAAACAAGCAGAATATATAATCCGAATGTTGAATTTGAACCAGCCGGTGAACTCGACATCGACAGCGAACGAAGAGGTTTACAAGATCTTGATCTTCGACAGATTTTGCCAGAATATATTATCTCCTTTGATTCATGTCAAGGATCTTCGCAAACATGGAGTCACTCTGTATTTCCTCATCGACAAGGATCGAAAACCCGTTCACGATGTGCCTGCTGTCTATTTCGTCCAACCAAGTAAGATTAACATAGATAGGATTGTTGCTGATGCTTCTCGTTTTCTCTATGATAGCTTTTACTTGAACTTTTCCTCTTCGATTCCTCGTCCTCTTCTTGAGGATCTCGCATCCGGGACTCTGAACTCGGATTCGGTTCACCGGATCGCGAAGGTGCACGATCAGTATTTGGAGTTCGTCACATTGGAAGAGAATCTATTTTCGTTGGCTCAAAAGAGTATATACGTTCAATTGAACGATCCCTCTGCTGGAGATCGTGAAATTGAGGAGATTATTGAGAGAATTGTTACTGGGTTGTTTGGTGTTTTGGCTACACTTGCTGTAGTTCCTGTGATTCGATGCCAACGAGGAGGCCCTGCAGAAATGGTCGCCTCGGCATTGGATCAGAGGTTGAGAGATCATTTGTTGTCGAAGAACAATTTGTTTACGGAAGGTGGGAGCTTTGCTAGCTCTTTCCAGCGTCCGATTCTGTGTCTGTACGATCGAAATTTTGAGTTATCTGTAGGAATACAACATGATTTTAGGTACAGACCTTTAGTTCATGATGTTCTAGGATTGAAGTTGAATAGATTGAGTGTGCAGGGTGAAAAGGGTGGGATGAAATCCTATGAATTAGATAGTTCTGACCCATTTTGGGTGGCAAATGGATCTTTGGAGTTTCCAGAAGTTGCAGTGGAGATTGAAACTCAGTTGAATAAGTATAAGAAGGATGTTGATGAGGTGAATAGAAGAACTGGTGGGACTGATGGAGCTGAGTTTAATGGAACAGATTTGATTGGGAACACTAAGCATTTGATGAATGCTGTGAATTCCTTGCCTGAACTGACTGAAAGGAAGCAAGTTATTGATAAGCACACAAATATTGCTACTGTTTTGTTGGGTGAGATCAAAGAGAGGTCTCTTGATTCTTATGCTAAAAAGGAGAATGACATGATGGCTAGAGGTGGTATTGATCGAAACGAACTCTTGAGTGTGCTAAAAGGGAAGGGTACTAAGATGGATAAGCTTCGATTCGCTGTTATATATCTGATCTCTTCTGAAAGTATAAACCAAACCGAAGTGGAAGCTGTGGAAGCTGCTCTGAGGGAATCAGAGGTTGATACAAGTGCATTTCAATATGTCAAGAAGATCAAGTCATTGAATGTCTCATTCTCATCAGCAAGTTCAGCTAGCAGAAACAACATTGTGGATTGGGCTGAAAAACTTTATGGGCAGTCAATTAGTGCAGTGACTGCTGGAGTTAAGAATCTCTTGTCTAGTGATAGGCAACTTGCACTGACAAGAACGGTTGAGGGGTTGATGGAAGGGAAACCGAATCCCGAGATTGATACTTTCCTTACATTCGATCCTCGTGCTCCGAAGTCGAGTTCTGGAACAAGTGGCAGCCATTTGAAAGGACCGTTCAAGGAAGCAATTGTGTTCGTGATTGGAGGGGGTAACTATGTCGAATATGGGAGCTTGCAAGATCTGGCGATGAACGAGCAGCCAGTCAAGCATATAATATACGGTTGCACCGAAATCCTCACCGGAGACGAGTTCGTGGAGCAGCTTTCACTGTTGGGGAAGAAGATGGGATTTGGCAATGTTGCACCTGCTCCTCCACCAGGTCATTAA 1869 42.91 MALNLRQKQAEYIIRMLNLNQPVNSTSTANEEVYKILIFDRFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQPSKINIDRIVADASRFLYDSFYLNFSSSIPRPLLEDLASGTLNSDSVHRIAKVHDQYLEFVTLEENLFSLAQKSIYVQLNDPSAGDREIEEIIERIVTGLFGVLATLAVVPVIRCQRGGPAEMVASALDQRLRDHLLSKNNLFTEGGSFASSFQRPILCLYDRNFELSVGIQHDFRYRPLVHDVLGLKLNRLSVQGEKGGMKSYELDSSDPFWVANGSLEFPEVAVEIETQLNKYKKDVDEVNRRTGGTDGAEFNGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMARGGIDRNELLSVLKGKGTKMDKLRFAVIYLISSESINQTEVEAVEAALRESEVDTSAFQYVKKIKSLNVSFSSASSASRNNIVDWAEKLYGQSISAVTAGVKNLLSSDRQLALTRTVEGLMEGKPNPEIDTFLTFDPRAPKSSSGTSGSHLKGPFKEAIVFVIGGGNYVEYGSLQDLAMNEQPVKHIIYGCTEILTGDEFVEQLSLLGKKMGFGNVAPAPPPGH 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40614735 40617172 + Sed0014704.1 Sed05g3003 715629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3003 622 Gene3D - 384 509 - -
Sed05g3003 622 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 258 502 IPR043127 -
Sed05g3003 622 Gene3D - 147 604 IPR027482 -
Sed05g3003 622 SUPERFAMILY Sec1/munc18-like (SM) proteins 1 608 IPR036045 -
Sed05g3003 622 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 4 599 IPR001619 GO:0000139(PANTHER)|GO:0005829(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0016192(InterPro)|GO:0016192(PANTHER)|GO:0019905(PANTHER)
Sed05g3003 622 Pfam Sec1 family 35 601 IPR001619 GO:0016192(InterPro)
Sed05g3003 622 Gene3D - 3 136 IPR043154 -
Sed05g3003 622 Coils Coil 309 329 - -
Sed05g3003 622 PIRSF VPS45_Sec1 3 612 IPR001619 GO:0016192(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3003 K19998 - - csv:101220905 1120.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2178 Sed-Chr5:34615809 Sed05g3003 Sed-Chr5:40614735 2.70E-297 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g228 . . . . . . . . . . . Cma20g00720 . Car20g00621 . . . . . . . . . . . . . . . . . . . . . . . . . Blo04g00602 . . . . . . . Sed05g3003 . Cmo20g00718 . . Car11g01407 . Cpe16g00345 Cpe05g01342 Bhi10g01246 Tan05g1061 Cmetu10g1643 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002622 0 2 2 1 1 2 3 2 2 2 2 2 3 2 1 3 2 2 3 2 2 2 2 1 2 2 2 2 2 1 57