Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g3004 | ATGGATAATGAAATTGGAGTGAACGCAATGGCAAATACGAATGATTCGAGTGTTTGTTCATTGATTCCCAATGGAAGCGAAGATATGGGTAAGAATTTGATCGAATTGAACGAACTAATCGAATCGATTGCGGGTTTTTCTGGGTTTCGAAAAACGCAATCGAAGGAATGTTTGAATTTGGTTAGGAGATTGAAGATGTTGGCGCCATTGTTGGAGGAGATTAGGGATCTTCACGATACGGTTCCTGCTCAGGCTCTGAGTCCCCATCTTGCTCATTTGAAGGAGGCTCTTGTTATGGCCAAAAGGTTACTGAAGAATTGCCACAATGGGAGTAAGATTTATCTGGCTTTTGAGAATGAGGCTGTCATGGCTAGGTTTCATGGTGTTTATGACAAATTGAAGGAGGCTCTTGATGAGCTGCCTTATGATAAGCTTGGAGTCTCAATTGAGTTGCAAGAACAAGTTGAGCTCATTTCTACGCAACTCAAAAGAGCGAAGTGTCGGAGAGATACACAAGACATGGAACTAGCGATGGACATGATTGTTGTGTTCTCTAAGAACGATGAGAGAAATGCTGATCCTGTTATACTCGAAAGATTGGCAAATAAATTAGAACTACGTAAAATTGCAGATTTGGAAGAAGAAACCATAGCTGTTCAAGAATTAATCAAACGTAGATGTCCACCAAATTCTGAAAGTGTCCAGCAAATTTTAGACCTTCTATCCAAGTTTAAACAAATTGCAGGTATGAACTCTAATGTTGTTCCTGATGGCCCCGTCGCATTGAAACGTCTGCAACGGTGTCGATCTACATTAATCCCTCATGAATTCCTCTGTCCAATTTCCTTAGAAATCATGTCAGATCCTGTCATTGTGGCTACTGGGCAGACTTATGACCGAGAAAGTATTCAGCAATGGTTGGATGCTAATAACCGTACCTGCCCGAAAACCGGGCAAACTTTGATGCATTTGTCACTAGCTCCAAATTATGCCCTCAAGAACCTCATTGTGCAGTGGTCTCAAAAGTCTGACCAAGAATTGCCTAAAAAGAAAGTGCTTGCTGCATTGGGTGACACTCCACCTGAGCTCACTCAGGAAATCTCCTTAGTACTCAACAATCTATCATCAAGCCAGTTGGATGTCCAGAGAGAGGCTATCATCAAGATCCGGGTCCTTGCCAAGGAGAATCCCGAGAACCGAGTTTGGATTGCGAATAGCGGAGTCATCCCTCCATTGGTTAAGCTTCTCTCTTACCCGGATCTCAATTTCCAAGAACATACCGTGACCGCTCTTTTGAACTTGTCTATCGACGAAGCGAATAAAGTACTCATTGTAAAAGAAGGTGCCATTCCTGCTATCATAGAGATCCTGCAGCATGGAACAGAGGAGGCCAAGGAGAATTCTGCTGCTACCCTATTTAGCTTGTCAATGTTAGAAGAGAACAAGGTTCTGATCGGATCTCTAAACGGGATCCCGCCGTTAGTATCTCTTCTCCGAGACGGTACATTTCGAGGAAAGAGGGATGCTGCCACTGCACTCTTCAACCTGACATCAAACCAATCAAACAAGTCCCGAGCAATCAAAGCCGGTATCATACCGCCCCTTCGCTCTTTACTTAAGGATAAGAACTTGGGAATGATTGATGAAGCTTTATCAATCTTGTTAGTCCTTGCCTCGAACCCCGAGGGACGGGCCGAGATCAATAATAACTCGTTCATCGCAACTCTAGTCAACTTCATAAAAGTTGGCACACCGAAGAACAAGGAATGTGCTACGGCATTACTTCTAGAGCTCGGACTAAACAATTCGCCTTCCATTTTGGTTGCACTGCAGTTTGGTGTGTATGAACATTTGGTAGAGATAACAAAATCTGGGACAAGCAGAGCCCAGAGAAAAGCAAACTCACTTTTGCAGTACATGATCAAGTGTGAGCACATTTCTTGA | 1944 | 43.31 | MDNEIGVNAMANTNDSSVCSLIPNGSEDMGKNLIELNELIESIAGFSGFRKTQSKECLNLVRRLKMLAPLLEEIRDLHDTVPAQALSPHLAHLKEALVMAKRLLKNCHNGSKIYLAFENEAVMARFHGVYDKLKEALDELPYDKLGVSIELQEQVELISTQLKRAKCRRDTQDMELAMDMIVVFSKNDERNADPVILERLANKLELRKIADLEEETIAVQELIKRRCPPNSESVQQILDLLSKFKQIAGMNSNVVPDGPVALKRLQRCRSTLIPHEFLCPISLEIMSDPVIVATGQTYDRESIQQWLDANNRTCPKTGQTLMHLSLAPNYALKNLIVQWSQKSDQELPKKKVLAALGDTPPELTQEISLVLNNLSSSQLDVQREAIIKIRVLAKENPENRVWIANSGVIPPLVKLLSYPDLNFQEHTVTALLNLSIDEANKVLIVKEGAIPAIIEILQHGTEEAKENSAATLFSLSMLEENKVLIGSLNGIPPLVSLLRDGTFRGKRDAATALFNLTSNQSNKSRAIKAGIIPPLRSLLKDKNLGMIDEALSILLVLASNPEGRAEINNNSFIATLVNFIKVGTPKNKECATALLLELGLNNSPSILVALQFGVYEHLVEITKSGTSRAQRKANSLLQYMIKCEHIS | 647 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 40619774 | 40623131 | + | Sed0001098.1 | Sed05g3004 | 715630 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g3004 | 647 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 262 | 354 | IPR013083 | - | |
Sed05g3004 | 647 | CDD | MLKL_NTD | 55 | 165 | - | - | |
Sed05g3004 | 647 | CDD | RING-Ubox_PUB | 274 | 326 | IPR045210 | - | |
Sed05g3004 | 647 | PANTHER | U BOX DOMAIN-CONTAINING | 51 | 640 | - | - | |
Sed05g3004 | 647 | FunFam | RING-type E3 ubiquitin transferase | 269 | 346 | - | - | |
Sed05g3004 | 647 | SUPERFAMILY | ARM repeat | 367 | 641 | IPR016024 | - | |
Sed05g3004 | 647 | Gene3D | - | 26 | 143 | IPR036537 | GO:0007166(InterPro) | |
Sed05g3004 | 647 | Gene3D | - | 358 | 504 | IPR011989 | - | |
Sed05g3004 | 647 | Pfam | U-box domain | 273 | 342 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed05g3004 | 647 | SMART | Ubox_2 | 276 | 339 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed05g3004 | 647 | FunFam | RING-type E3 ubiquitin transferase | 30 | 143 | - | - | |
Sed05g3004 | 647 | Gene3D | - | 506 | 642 | IPR011989 | - | |
Sed05g3004 | 647 | ProSiteProfiles | U-box domain profile. | 272 | 346 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed05g3004 | 647 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 407 | 449 | IPR000225 | GO:0005515(InterPro) | |
Sed05g3004 | 647 | FunFam | RING-type E3 ubiquitin transferase | 356 | 646 | - | - | |
Sed05g3004 | 647 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 448 | 490 | IPR000225 | GO:0005515(InterPro) | |
Sed05g3004 | 647 | Pfam | Armadillo/beta-catenin-like repeat | 480 | 518 | IPR000225 | GO:0005515(InterPro) | |
Sed05g3004 | 647 | Pfam | Armadillo/beta-catenin-like repeat | 438 | 476 | IPR000225 | GO:0005515(InterPro) | |
Sed05g3004 | 647 | Pfam | Armadillo/beta-catenin-like repeat | 396 | 435 | IPR000225 | GO:0005515(InterPro) | |
Sed05g3004 | 647 | SUPERFAMILY | RING/U-box | 273 | 347 | - | - | |
Sed05g3004 | 647 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 489 | 531 | IPR000225 | GO:0005515(InterPro) | |
Sed05g3004 | 647 | SMART | arm_5 | 519 | 559 | IPR000225 | GO:0005515(InterPro) | |
Sed05g3004 | 647 | SMART | arm_5 | 560 | 600 | IPR000225 | GO:0005515(InterPro) | |
Sed05g3004 | 647 | SMART | arm_5 | 396 | 436 | IPR000225 | GO:0005515(InterPro) | |
Sed05g3004 | 647 | SMART | arm_5 | 602 | 642 | IPR000225 | GO:0005515(InterPro) | |
Sed05g3004 | 647 | SMART | arm_5 | 437 | 477 | IPR000225 | GO:0005515(InterPro) | |
Sed05g3004 | 647 | SMART | arm_5 | 478 | 518 | IPR000225 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g3004 | Sed-Chr5:40619774 | Sed13g1382 | Sed-Chr13:19282203 | 1.10E-80 | dispersed | |
Sed01g0633 | Sed-Chr1:4550941 | Sed05g3004 | Sed-Chr5:40619774 | 1.80E-216 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g3004 | - | - | - | 0.0 |