Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3004 ATGGATAATGAAATTGGAGTGAACGCAATGGCAAATACGAATGATTCGAGTGTTTGTTCATTGATTCCCAATGGAAGCGAAGATATGGGTAAGAATTTGATCGAATTGAACGAACTAATCGAATCGATTGCGGGTTTTTCTGGGTTTCGAAAAACGCAATCGAAGGAATGTTTGAATTTGGTTAGGAGATTGAAGATGTTGGCGCCATTGTTGGAGGAGATTAGGGATCTTCACGATACGGTTCCTGCTCAGGCTCTGAGTCCCCATCTTGCTCATTTGAAGGAGGCTCTTGTTATGGCCAAAAGGTTACTGAAGAATTGCCACAATGGGAGTAAGATTTATCTGGCTTTTGAGAATGAGGCTGTCATGGCTAGGTTTCATGGTGTTTATGACAAATTGAAGGAGGCTCTTGATGAGCTGCCTTATGATAAGCTTGGAGTCTCAATTGAGTTGCAAGAACAAGTTGAGCTCATTTCTACGCAACTCAAAAGAGCGAAGTGTCGGAGAGATACACAAGACATGGAACTAGCGATGGACATGATTGTTGTGTTCTCTAAGAACGATGAGAGAAATGCTGATCCTGTTATACTCGAAAGATTGGCAAATAAATTAGAACTACGTAAAATTGCAGATTTGGAAGAAGAAACCATAGCTGTTCAAGAATTAATCAAACGTAGATGTCCACCAAATTCTGAAAGTGTCCAGCAAATTTTAGACCTTCTATCCAAGTTTAAACAAATTGCAGGTATGAACTCTAATGTTGTTCCTGATGGCCCCGTCGCATTGAAACGTCTGCAACGGTGTCGATCTACATTAATCCCTCATGAATTCCTCTGTCCAATTTCCTTAGAAATCATGTCAGATCCTGTCATTGTGGCTACTGGGCAGACTTATGACCGAGAAAGTATTCAGCAATGGTTGGATGCTAATAACCGTACCTGCCCGAAAACCGGGCAAACTTTGATGCATTTGTCACTAGCTCCAAATTATGCCCTCAAGAACCTCATTGTGCAGTGGTCTCAAAAGTCTGACCAAGAATTGCCTAAAAAGAAAGTGCTTGCTGCATTGGGTGACACTCCACCTGAGCTCACTCAGGAAATCTCCTTAGTACTCAACAATCTATCATCAAGCCAGTTGGATGTCCAGAGAGAGGCTATCATCAAGATCCGGGTCCTTGCCAAGGAGAATCCCGAGAACCGAGTTTGGATTGCGAATAGCGGAGTCATCCCTCCATTGGTTAAGCTTCTCTCTTACCCGGATCTCAATTTCCAAGAACATACCGTGACCGCTCTTTTGAACTTGTCTATCGACGAAGCGAATAAAGTACTCATTGTAAAAGAAGGTGCCATTCCTGCTATCATAGAGATCCTGCAGCATGGAACAGAGGAGGCCAAGGAGAATTCTGCTGCTACCCTATTTAGCTTGTCAATGTTAGAAGAGAACAAGGTTCTGATCGGATCTCTAAACGGGATCCCGCCGTTAGTATCTCTTCTCCGAGACGGTACATTTCGAGGAAAGAGGGATGCTGCCACTGCACTCTTCAACCTGACATCAAACCAATCAAACAAGTCCCGAGCAATCAAAGCCGGTATCATACCGCCCCTTCGCTCTTTACTTAAGGATAAGAACTTGGGAATGATTGATGAAGCTTTATCAATCTTGTTAGTCCTTGCCTCGAACCCCGAGGGACGGGCCGAGATCAATAATAACTCGTTCATCGCAACTCTAGTCAACTTCATAAAAGTTGGCACACCGAAGAACAAGGAATGTGCTACGGCATTACTTCTAGAGCTCGGACTAAACAATTCGCCTTCCATTTTGGTTGCACTGCAGTTTGGTGTGTATGAACATTTGGTAGAGATAACAAAATCTGGGACAAGCAGAGCCCAGAGAAAAGCAAACTCACTTTTGCAGTACATGATCAAGTGTGAGCACATTTCTTGA 1944 43.31 MDNEIGVNAMANTNDSSVCSLIPNGSEDMGKNLIELNELIESIAGFSGFRKTQSKECLNLVRRLKMLAPLLEEIRDLHDTVPAQALSPHLAHLKEALVMAKRLLKNCHNGSKIYLAFENEAVMARFHGVYDKLKEALDELPYDKLGVSIELQEQVELISTQLKRAKCRRDTQDMELAMDMIVVFSKNDERNADPVILERLANKLELRKIADLEEETIAVQELIKRRCPPNSESVQQILDLLSKFKQIAGMNSNVVPDGPVALKRLQRCRSTLIPHEFLCPISLEIMSDPVIVATGQTYDRESIQQWLDANNRTCPKTGQTLMHLSLAPNYALKNLIVQWSQKSDQELPKKKVLAALGDTPPELTQEISLVLNNLSSSQLDVQREAIIKIRVLAKENPENRVWIANSGVIPPLVKLLSYPDLNFQEHTVTALLNLSIDEANKVLIVKEGAIPAIIEILQHGTEEAKENSAATLFSLSMLEENKVLIGSLNGIPPLVSLLRDGTFRGKRDAATALFNLTSNQSNKSRAIKAGIIPPLRSLLKDKNLGMIDEALSILLVLASNPEGRAEINNNSFIATLVNFIKVGTPKNKECATALLLELGLNNSPSILVALQFGVYEHLVEITKSGTSRAQRKANSLLQYMIKCEHIS 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40619774 40623131 + Sed0001098.1 Sed05g3004 715630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3004 647 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 354 IPR013083 -
Sed05g3004 647 CDD MLKL_NTD 55 165 - -
Sed05g3004 647 CDD RING-Ubox_PUB 274 326 IPR045210 -
Sed05g3004 647 PANTHER U BOX DOMAIN-CONTAINING 51 640 - -
Sed05g3004 647 FunFam RING-type E3 ubiquitin transferase 269 346 - -
Sed05g3004 647 SUPERFAMILY ARM repeat 367 641 IPR016024 -
Sed05g3004 647 Gene3D - 26 143 IPR036537 GO:0007166(InterPro)
Sed05g3004 647 Gene3D - 358 504 IPR011989 -
Sed05g3004 647 Pfam U-box domain 273 342 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed05g3004 647 SMART Ubox_2 276 339 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed05g3004 647 FunFam RING-type E3 ubiquitin transferase 30 143 - -
Sed05g3004 647 Gene3D - 506 642 IPR011989 -
Sed05g3004 647 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed05g3004 647 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 407 449 IPR000225 GO:0005515(InterPro)
Sed05g3004 647 FunFam RING-type E3 ubiquitin transferase 356 646 - -
Sed05g3004 647 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 448 490 IPR000225 GO:0005515(InterPro)
Sed05g3004 647 Pfam Armadillo/beta-catenin-like repeat 480 518 IPR000225 GO:0005515(InterPro)
Sed05g3004 647 Pfam Armadillo/beta-catenin-like repeat 438 476 IPR000225 GO:0005515(InterPro)
Sed05g3004 647 Pfam Armadillo/beta-catenin-like repeat 396 435 IPR000225 GO:0005515(InterPro)
Sed05g3004 647 SUPERFAMILY RING/U-box 273 347 - -
Sed05g3004 647 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 489 531 IPR000225 GO:0005515(InterPro)
Sed05g3004 647 SMART arm_5 519 559 IPR000225 GO:0005515(InterPro)
Sed05g3004 647 SMART arm_5 560 600 IPR000225 GO:0005515(InterPro)
Sed05g3004 647 SMART arm_5 396 436 IPR000225 GO:0005515(InterPro)
Sed05g3004 647 SMART arm_5 602 642 IPR000225 GO:0005515(InterPro)
Sed05g3004 647 SMART arm_5 437 477 IPR000225 GO:0005515(InterPro)
Sed05g3004 647 SMART arm_5 478 518 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3004 Sed-Chr5:40619774 Sed13g1382 Sed-Chr13:19282203 1.10E-80 dispersed
Sed01g0633 Sed-Chr1:4550941 Sed05g3004 Sed-Chr5:40619774 1.80E-216 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3004 - - - 0.0