Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3024 ATGGAGGATAAGCGAGGTATAAGCAACAACAAGGCAGTGGAAAAATTGAATGCATTTAACAGAGAATCAAACACAACAAACACTCCTGGAAGTGAAGCAGATAAAGACAGCAAAAGCTGGCAATCTTCTTCCAAAAGGGCAGTATCAACAGAAGCAAACATAGCAGAAAGGGTGGCTGAGTGGGGACTGGTGGTGGATACAGACGTGGAAGAAGGCAGTTTCAAGGCCATAGTGGGGAGAACATCAGGAGAAGGAGGGGGTAGCAAAAGGTCATCAGAGAAATTCAGTGGCGTGGGAAGAACTTCAAGCTTTGGCAATGAAAGCTCTGGAGTTTTTCCAAGGGTATCACAGGAGTTAAAGGATGCTTTGGCTTCTTTGGAACAGACATTTGTAGTCTCTGATGCTACCAAACCAGATTGCCCCATCGTGTATGCGAGCAGTGGATTTTTTGGCATGACTGGTTATACTTCAGAGGAGATCATAGGAAGGAACTGCCGTTTTCTCCAAGGACCAGAGACCGACCAGAAAGAAGTTGACAAAATTCGATTTGCAGTGAAGAACGGCAAAAGCTACTGCGGGAGGCTCTTGAACTACAAGAAGAACGGCACTCCATTCTGGAATCTTCTGACAGTCACGCCTATCAAGGATGACAATGGCAATGCTATCAAATTTATTGGAATGCAGGTAGAAGTAAGCAAGTACACAGAAGGTGTAAATGATAGAGCATTACGACCGAACGGGCTACCGAAGTCATTAATTCGCTATGATGCTCGCCAGAAGGAAAAGGCAATCGGTTCCATCACAGAGGTTGTTCAGACTGTGAAGAATCCTAGATCTCAAAATCGAGCTATGAGTCATGACATTACCAGGAAAAAAGAAGAGTTGGAGAAGTTCAATCTTGACTATGTTCTTCCGAAGTCTGTTGAAGCTGTAAATGATACACCAAGTAGACAAACTCCTCAGCAGGACCTCAGAGATGATGGCTTAGGCAAGAATCCTAGGTTATCAAGTCGAGTTTCTTCTATGGGAATCAAAGGGAAATCTCTAAACATTTCAAGGAAGCTTGAAGTACCAGCCCTTGAACCAGAAATTTTGATGACCGATGAAATAGAACGGTCTGATAGTTGGGACCGTGCTGAAAGAGAAAGAGATATTCGGCAAGGAATTGATTTAGCTACCACTCTGGAGCGCATTGAGAAAAATTTTGTCATTAGTGATCCAAGGCTTCCTGATAATCCAATTATATTTGCATCCGACAGCTTTCTTGAATTGACAGAATACACACGTGAAGAAATTTTGGGACGAAACTGCCGATTTCTTCAAGGACCTGAAACAGATCAAGATACTGTCTCAAAAATAAGGGATGCAATTAGGGAACAAAGAGAAATAACTGTTCAGTTGATCAACTATACCAAGTCAGGTAAAAAGTTCTGGAATTTATTCCACTTGCAACCAATGCGGGATGAAATGGGAGAGCTTCAGTATTTTATTGGTGTACAACTAGATGGAAGTGGTCATGTGGAACCTTTGCAAAATCGTCTTTCTGAGACAGCAGAGCAGCAGAGTGCCATGCTGGTTAAAGCCACTGCAGAGAATGTTGATGAGGCTGTCCGTGAACTTCCTGATGCCAACTCGAGACCAGAAGATTTGTGGGCAATTCATTCTCAACCAGTCTTCCCAAGGCCTCACAAGAAGCATAGTTCTTCTTGGACTGCTATACAAAAGATTACTCGACGTGGTGAAAAAATCGGACTTCAACATTTTAAGCCAATTAAACCACTGGGTTGTGGAGACACTGGCAGTGTTCATTTGGTGGAACTTCTAGATACAAGTGAACTTTATGCCTTGAAAGCAATGGATAAATCGACACTGATGATTCGAAACAAGGTCCACAGAGCATGTATTGAAAGGCAAATCATTGCACTTCTGGATCATCCCTTTCTTCCAACACTATACACTTCATTTGAGACCCCTACACACGTTTGTTTGATAACAGACTTTTGCCCTGGTGGAGAGTTATTTGCATTGCTCGATAAACAGCCTATGAAAATGTTTAAAGAAGATTCTGCAAGGTTCTATGCTGCAGAGGTCGTCATTGGTTTGGAATATCTTCACTGTCTAGGAATCATTTATCGGGATCTGAAGCCTGAAAATATTCTTCTTCAGAAGGATGGCCATGTTACGCTTGCTGACTTTGATCTATCACTTGTGACATCCTGCAAACCGCAGATTGTGAAGTATCCATCGCCTCATGGTAGAAGGAGATCTCGAAGTCAACCTCCACCAGTATTTGTTGCAGAGCCAATCACGCAATCAAATTCATTTGTTGGAACTGAAGAGTATATTGCTCCTGAAATTATAACAGGAGAAGGCCACAGCAGCTCTATCGATTGGTGGGCTCTTGGTATTTTGTTGTACGAGATGCTTTATGGCCGCACGCCTTTCAGGGGAAAGAATAGGCAGAAGACTTTTGGTAACATTTTGCATAAAGATCTCACCTTCCCAAGTAGCATTCAGGCAAGTCTTGCGGCAAGGCAGTTGATCAATGCATTGCTACAAAGAGATCCCGCTCGAAGATTAGGATCAAGCACAGGTGCAAATGAAATCAAACAGCACCCCTTTTTCCAATCAATCAACTGGCCGCTGATCCGGTGTATGGTCCCACCACCATTAGAATCACCCCTTCACCTTACTGGGAAAGATGAAACCACCAAGAATGTGAACTGGGAAGACGATGGGGTGCTTGATACAATTGATTTGGATTTTTTTTGA 2772 42.97 MEDKRGISNNKAVEKLNAFNRESNTTNTPGSEADKDSKSWQSSSKRAVSTEANIAERVAEWGLVVDTDVEEGSFKAIVGRTSGEGGGSKRSSEKFSGVGRTSSFGNESSGVFPRVSQELKDALASLEQTFVVSDATKPDCPIVYASSGFFGMTGYTSEEIIGRNCRFLQGPETDQKEVDKIRFAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNAIKFIGMQVEVSKYTEGVNDRALRPNGLPKSLIRYDARQKEKAIGSITEVVQTVKNPRSQNRAMSHDITRKKEELEKFNLDYVLPKSVEAVNDTPSRQTPQQDLRDDGLGKNPRLSSRVSSMGIKGKSLNISRKLEVPALEPEILMTDEIERSDSWDRAERERDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQDTVSKIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDEMGELQYFIGVQLDGSGHVEPLQNRLSETAEQQSAMLVKATAENVDEAVRELPDANSRPEDLWAIHSQPVFPRPHKKHSSSWTAIQKITRRGEKIGLQHFKPIKPLGCGDTGSVHLVELLDTSELYALKAMDKSTLMIRNKVHRACIERQIIALLDHPFLPTLYTSFETPTHVCLITDFCPGGELFALLDKQPMKMFKEDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVTLADFDLSLVTSCKPQIVKYPSPHGRRRSRSQPPPVFVAEPITQSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYGRTPFRGKNRQKTFGNILHKDLTFPSSIQASLAARQLINALLQRDPARRLGSSTGANEIKQHPFFQSINWPLIRCMVPPPLESPLHLTGKDETTKNVNWEDDGVLDTIDLDFF 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40702391 40720203 - Sed0001665.1 Sed05g3024 715650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3024 923 FunFam Putative LOV domain-containing protein 672 887 - -
Sed05g3024 923 FunFam LOV domain-containing protein 376 540 - -
Sed05g3024 923 Gene3D Phosphorylase Kinase; domain 1 587 671 - -
Sed05g3024 923 MobiDBLite consensus disorder prediction 311 325 - -
Sed05g3024 923 ProSitePatterns Serine/Threonine protein kinases active-site signature. 709 721 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g3024 923 ProSiteProfiles PAC domain profile. 461 515 IPR000700 -
Sed05g3024 923 MobiDBLite consensus disorder prediction 309 342 - -
Sed05g3024 923 MobiDBLite consensus disorder prediction 1 51 - -
Sed05g3024 923 ProSiteProfiles PAC domain profile. 189 243 IPR000700 -
Sed05g3024 923 FunFam Putative LOV domain-containing protein 129 285 - -
Sed05g3024 923 SMART pas_2 389 458 IPR000014 -
Sed05g3024 923 SMART pas_2 117 186 IPR000014 -
Sed05g3024 923 PANTHER FLIPPASE KINASE 1-RELATED 532 896 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed05g3024 923 MobiDBLite consensus disorder prediction 85 109 - -
Sed05g3024 923 Pfam Protein kinase domain 591 875 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3024 923 ProSitePatterns Protein kinases ATP-binding region signature. 594 617 IPR017441 GO:0005524(InterPro)
Sed05g3024 923 SUPERFAMILY PYP-like sensor domain (PAS domain) 406 502 IPR035965 -
Sed05g3024 923 SUPERFAMILY Protein kinase-like (PK-like) 563 899 IPR011009 -
Sed05g3024 923 NCBIfam PAS domain S-box protein 413 502 IPR000014 -
Sed05g3024 923 NCBIfam PAS domain S-box protein 141 232 IPR000014 -
Sed05g3024 923 FunFam LOV domain-containing protein 587 671 - -
Sed05g3024 923 SUPERFAMILY PYP-like sensor domain (PAS domain) 136 228 IPR035965 -
Sed05g3024 923 ProSiteProfiles PAS repeat profile. 387 460 IPR000014 -
Sed05g3024 923 Gene3D PAS domain 129 300 - -
Sed05g3024 923 SMART serkin_6 588 875 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3024 923 ProSiteProfiles PAS repeat profile. 115 188 IPR000014 -
Sed05g3024 923 Gene3D PAS domain 376 540 - -
Sed05g3024 923 CDD PAS 142 231 IPR000014 -
Sed05g3024 923 ProSiteProfiles Protein kinase domain profile. 588 875 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3024 923 MobiDBLite consensus disorder prediction 13 50 - -
Sed05g3024 923 Gene3D Transferase(Phosphotransferase) domain 1 672 893 - -
Sed05g3024 923 MobiDBLite consensus disorder prediction 78 109 - -
Sed05g3024 923 CDD STKc_phototropin_like 586 894 - -
Sed05g3024 923 CDD PAS 410 502 IPR000014 -
Sed05g3024 923 Pfam PAS domain 136 232 IPR000014 -
Sed05g3024 923 Pfam PAS domain 410 502 IPR000014 -
Sed05g3024 923 SMART pac_2 464 506 IPR001610 -
Sed05g3024 923 SMART pac_2 192 234 IPR001610 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0911 Sed-Chr1:6597224 Sed05g3024 Sed-Chr5:40702391 2.00E-298 dispersed
Sed05g2908 Sed-Chr5:40036313 Sed05g3024 Sed-Chr5:40702391 1.20E-305 dispersed
Sed05g3024 Sed-Chr5:40702391 Sed12g0019 Sed-Chr12:123872 5.50E-97 dispersed
Sed14g1668 Sed-Chr14:24779204 Sed05g3024 Sed-Chr5:40702391 3.00E-42 dispersed
Sed14g1669 Sed-Chr14:24779204 Sed05g3024 Sed-Chr5:40702391 2.60E-42 dispersed
Sed04g0674 Sed-Chr4:5317073 Sed05g3024 Sed-Chr5:40702391 2.10E-28 transposed
Sed01g0619 Sed-Chr1:4410541 Sed05g3024 Sed-Chr5:40702391 0.00E+00 wgd
Sed04g3758 Sed-Chr4:46261632 Sed05g3024 Sed-Chr5:40702391 8.50E-279 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79262 PF00069 Pkinase 2.30E-61 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3024 K20715 - csv:101215355 1647.48