Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g3024 | ATGGAGGATAAGCGAGGTATAAGCAACAACAAGGCAGTGGAAAAATTGAATGCATTTAACAGAGAATCAAACACAACAAACACTCCTGGAAGTGAAGCAGATAAAGACAGCAAAAGCTGGCAATCTTCTTCCAAAAGGGCAGTATCAACAGAAGCAAACATAGCAGAAAGGGTGGCTGAGTGGGGACTGGTGGTGGATACAGACGTGGAAGAAGGCAGTTTCAAGGCCATAGTGGGGAGAACATCAGGAGAAGGAGGGGGTAGCAAAAGGTCATCAGAGAAATTCAGTGGCGTGGGAAGAACTTCAAGCTTTGGCAATGAAAGCTCTGGAGTTTTTCCAAGGGTATCACAGGAGTTAAAGGATGCTTTGGCTTCTTTGGAACAGACATTTGTAGTCTCTGATGCTACCAAACCAGATTGCCCCATCGTGTATGCGAGCAGTGGATTTTTTGGCATGACTGGTTATACTTCAGAGGAGATCATAGGAAGGAACTGCCGTTTTCTCCAAGGACCAGAGACCGACCAGAAAGAAGTTGACAAAATTCGATTTGCAGTGAAGAACGGCAAAAGCTACTGCGGGAGGCTCTTGAACTACAAGAAGAACGGCACTCCATTCTGGAATCTTCTGACAGTCACGCCTATCAAGGATGACAATGGCAATGCTATCAAATTTATTGGAATGCAGGTAGAAGTAAGCAAGTACACAGAAGGTGTAAATGATAGAGCATTACGACCGAACGGGCTACCGAAGTCATTAATTCGCTATGATGCTCGCCAGAAGGAAAAGGCAATCGGTTCCATCACAGAGGTTGTTCAGACTGTGAAGAATCCTAGATCTCAAAATCGAGCTATGAGTCATGACATTACCAGGAAAAAAGAAGAGTTGGAGAAGTTCAATCTTGACTATGTTCTTCCGAAGTCTGTTGAAGCTGTAAATGATACACCAAGTAGACAAACTCCTCAGCAGGACCTCAGAGATGATGGCTTAGGCAAGAATCCTAGGTTATCAAGTCGAGTTTCTTCTATGGGAATCAAAGGGAAATCTCTAAACATTTCAAGGAAGCTTGAAGTACCAGCCCTTGAACCAGAAATTTTGATGACCGATGAAATAGAACGGTCTGATAGTTGGGACCGTGCTGAAAGAGAAAGAGATATTCGGCAAGGAATTGATTTAGCTACCACTCTGGAGCGCATTGAGAAAAATTTTGTCATTAGTGATCCAAGGCTTCCTGATAATCCAATTATATTTGCATCCGACAGCTTTCTTGAATTGACAGAATACACACGTGAAGAAATTTTGGGACGAAACTGCCGATTTCTTCAAGGACCTGAAACAGATCAAGATACTGTCTCAAAAATAAGGGATGCAATTAGGGAACAAAGAGAAATAACTGTTCAGTTGATCAACTATACCAAGTCAGGTAAAAAGTTCTGGAATTTATTCCACTTGCAACCAATGCGGGATGAAATGGGAGAGCTTCAGTATTTTATTGGTGTACAACTAGATGGAAGTGGTCATGTGGAACCTTTGCAAAATCGTCTTTCTGAGACAGCAGAGCAGCAGAGTGCCATGCTGGTTAAAGCCACTGCAGAGAATGTTGATGAGGCTGTCCGTGAACTTCCTGATGCCAACTCGAGACCAGAAGATTTGTGGGCAATTCATTCTCAACCAGTCTTCCCAAGGCCTCACAAGAAGCATAGTTCTTCTTGGACTGCTATACAAAAGATTACTCGACGTGGTGAAAAAATCGGACTTCAACATTTTAAGCCAATTAAACCACTGGGTTGTGGAGACACTGGCAGTGTTCATTTGGTGGAACTTCTAGATACAAGTGAACTTTATGCCTTGAAAGCAATGGATAAATCGACACTGATGATTCGAAACAAGGTCCACAGAGCATGTATTGAAAGGCAAATCATTGCACTTCTGGATCATCCCTTTCTTCCAACACTATACACTTCATTTGAGACCCCTACACACGTTTGTTTGATAACAGACTTTTGCCCTGGTGGAGAGTTATTTGCATTGCTCGATAAACAGCCTATGAAAATGTTTAAAGAAGATTCTGCAAGGTTCTATGCTGCAGAGGTCGTCATTGGTTTGGAATATCTTCACTGTCTAGGAATCATTTATCGGGATCTGAAGCCTGAAAATATTCTTCTTCAGAAGGATGGCCATGTTACGCTTGCTGACTTTGATCTATCACTTGTGACATCCTGCAAACCGCAGATTGTGAAGTATCCATCGCCTCATGGTAGAAGGAGATCTCGAAGTCAACCTCCACCAGTATTTGTTGCAGAGCCAATCACGCAATCAAATTCATTTGTTGGAACTGAAGAGTATATTGCTCCTGAAATTATAACAGGAGAAGGCCACAGCAGCTCTATCGATTGGTGGGCTCTTGGTATTTTGTTGTACGAGATGCTTTATGGCCGCACGCCTTTCAGGGGAAAGAATAGGCAGAAGACTTTTGGTAACATTTTGCATAAAGATCTCACCTTCCCAAGTAGCATTCAGGCAAGTCTTGCGGCAAGGCAGTTGATCAATGCATTGCTACAAAGAGATCCCGCTCGAAGATTAGGATCAAGCACAGGTGCAAATGAAATCAAACAGCACCCCTTTTTCCAATCAATCAACTGGCCGCTGATCCGGTGTATGGTCCCACCACCATTAGAATCACCCCTTCACCTTACTGGGAAAGATGAAACCACCAAGAATGTGAACTGGGAAGACGATGGGGTGCTTGATACAATTGATTTGGATTTTTTTTGA | 2772 | 42.97 | MEDKRGISNNKAVEKLNAFNRESNTTNTPGSEADKDSKSWQSSSKRAVSTEANIAERVAEWGLVVDTDVEEGSFKAIVGRTSGEGGGSKRSSEKFSGVGRTSSFGNESSGVFPRVSQELKDALASLEQTFVVSDATKPDCPIVYASSGFFGMTGYTSEEIIGRNCRFLQGPETDQKEVDKIRFAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNAIKFIGMQVEVSKYTEGVNDRALRPNGLPKSLIRYDARQKEKAIGSITEVVQTVKNPRSQNRAMSHDITRKKEELEKFNLDYVLPKSVEAVNDTPSRQTPQQDLRDDGLGKNPRLSSRVSSMGIKGKSLNISRKLEVPALEPEILMTDEIERSDSWDRAERERDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQDTVSKIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDEMGELQYFIGVQLDGSGHVEPLQNRLSETAEQQSAMLVKATAENVDEAVRELPDANSRPEDLWAIHSQPVFPRPHKKHSSSWTAIQKITRRGEKIGLQHFKPIKPLGCGDTGSVHLVELLDTSELYALKAMDKSTLMIRNKVHRACIERQIIALLDHPFLPTLYTSFETPTHVCLITDFCPGGELFALLDKQPMKMFKEDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVTLADFDLSLVTSCKPQIVKYPSPHGRRRSRSQPPPVFVAEPITQSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYGRTPFRGKNRQKTFGNILHKDLTFPSSIQASLAARQLINALLQRDPARRLGSSTGANEIKQHPFFQSINWPLIRCMVPPPLESPLHLTGKDETTKNVNWEDDGVLDTIDLDFF | 923 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 40702391 | 40720203 | - | Sed0001665.1 | Sed05g3024 | 715650 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g3024 | 923 | FunFam | Putative LOV domain-containing protein | 672 | 887 | - | - | |
Sed05g3024 | 923 | FunFam | LOV domain-containing protein | 376 | 540 | - | - | |
Sed05g3024 | 923 | Gene3D | Phosphorylase Kinase; domain 1 | 587 | 671 | - | - | |
Sed05g3024 | 923 | MobiDBLite | consensus disorder prediction | 311 | 325 | - | - | |
Sed05g3024 | 923 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 709 | 721 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed05g3024 | 923 | ProSiteProfiles | PAC domain profile. | 461 | 515 | IPR000700 | - | |
Sed05g3024 | 923 | MobiDBLite | consensus disorder prediction | 309 | 342 | - | - | |
Sed05g3024 | 923 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Sed05g3024 | 923 | ProSiteProfiles | PAC domain profile. | 189 | 243 | IPR000700 | - | |
Sed05g3024 | 923 | FunFam | Putative LOV domain-containing protein | 129 | 285 | - | - | |
Sed05g3024 | 923 | SMART | pas_2 | 389 | 458 | IPR000014 | - | |
Sed05g3024 | 923 | SMART | pas_2 | 117 | 186 | IPR000014 | - | |
Sed05g3024 | 923 | PANTHER | FLIPPASE KINASE 1-RELATED | 532 | 896 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Sed05g3024 | 923 | MobiDBLite | consensus disorder prediction | 85 | 109 | - | - | |
Sed05g3024 | 923 | Pfam | Protein kinase domain | 591 | 875 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g3024 | 923 | ProSitePatterns | Protein kinases ATP-binding region signature. | 594 | 617 | IPR017441 | GO:0005524(InterPro) | |
Sed05g3024 | 923 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 406 | 502 | IPR035965 | - | |
Sed05g3024 | 923 | SUPERFAMILY | Protein kinase-like (PK-like) | 563 | 899 | IPR011009 | - | |
Sed05g3024 | 923 | NCBIfam | PAS domain S-box protein | 413 | 502 | IPR000014 | - | |
Sed05g3024 | 923 | NCBIfam | PAS domain S-box protein | 141 | 232 | IPR000014 | - | |
Sed05g3024 | 923 | FunFam | LOV domain-containing protein | 587 | 671 | - | - | |
Sed05g3024 | 923 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 136 | 228 | IPR035965 | - | |
Sed05g3024 | 923 | ProSiteProfiles | PAS repeat profile. | 387 | 460 | IPR000014 | - | |
Sed05g3024 | 923 | Gene3D | PAS domain | 129 | 300 | - | - | |
Sed05g3024 | 923 | SMART | serkin_6 | 588 | 875 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g3024 | 923 | ProSiteProfiles | PAS repeat profile. | 115 | 188 | IPR000014 | - | |
Sed05g3024 | 923 | Gene3D | PAS domain | 376 | 540 | - | - | |
Sed05g3024 | 923 | CDD | PAS | 142 | 231 | IPR000014 | - | |
Sed05g3024 | 923 | ProSiteProfiles | Protein kinase domain profile. | 588 | 875 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g3024 | 923 | MobiDBLite | consensus disorder prediction | 13 | 50 | - | - | |
Sed05g3024 | 923 | Gene3D | Transferase(Phosphotransferase) domain 1 | 672 | 893 | - | - | |
Sed05g3024 | 923 | MobiDBLite | consensus disorder prediction | 78 | 109 | - | - | |
Sed05g3024 | 923 | CDD | STKc_phototropin_like | 586 | 894 | - | - | |
Sed05g3024 | 923 | CDD | PAS | 410 | 502 | IPR000014 | - | |
Sed05g3024 | 923 | Pfam | PAS domain | 136 | 232 | IPR000014 | - | |
Sed05g3024 | 923 | Pfam | PAS domain | 410 | 502 | IPR000014 | - | |
Sed05g3024 | 923 | SMART | pac_2 | 464 | 506 | IPR001610 | - | |
Sed05g3024 | 923 | SMART | pac_2 | 192 | 234 | IPR001610 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0911 | Sed-Chr1:6597224 | Sed05g3024 | Sed-Chr5:40702391 | 2.00E-298 | dispersed | |
Sed05g2908 | Sed-Chr5:40036313 | Sed05g3024 | Sed-Chr5:40702391 | 1.20E-305 | dispersed | |
Sed05g3024 | Sed-Chr5:40702391 | Sed12g0019 | Sed-Chr12:123872 | 5.50E-97 | dispersed | |
Sed14g1668 | Sed-Chr14:24779204 | Sed05g3024 | Sed-Chr5:40702391 | 3.00E-42 | dispersed | |
Sed14g1669 | Sed-Chr14:24779204 | Sed05g3024 | Sed-Chr5:40702391 | 2.60E-42 | dispersed | |
Sed04g0674 | Sed-Chr4:5317073 | Sed05g3024 | Sed-Chr5:40702391 | 2.10E-28 | transposed | |
Sed01g0619 | Sed-Chr1:4410541 | Sed05g3024 | Sed-Chr5:40702391 | 0.00E+00 | wgd | |
Sed04g3758 | Sed-Chr4:46261632 | Sed05g3024 | Sed-Chr5:40702391 | 8.50E-279 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79262 | PF00069 | Pkinase | 2.30E-61 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g3024 | K20715 | - | csv:101215355 | 1647.48 |