Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3038 ATGGATGGATTTAGGAGTAGCGACATCAAACCAAGCGTTGGAAGGCACTCCCACGCCGAGATGGGATCATTAGGCGAGAAAACAGTATTGGAATTTGAAGACGAGAGCCTTGTTAGTCCTGTATCATTAACTAGAAAAAAGTTTTCCATTGAGGGGCCCTTGCATTCTCCTTCACTGGGTGGTGGTTCACAGAAATTTTCTTACATTAACATGACGAACCGGGTATTTCGCAGCATTAAGATTGTCGTCTTCTCCGCTAAAATCAACTGCCTCATGCCCTTTGGGCCTTTAGCAATATTAGTCAGCAGTCTATCTGGGCACCATGGTTGGGTCTTCCTTTTAAGCTTGTTGGGGATCATACCTCTTGCTGAGCGTCTGGGCTATGCAACTGAACAACTGGCATGCTTTACTGGAGCCACAGTTGGAGGTCTCCTGAATGCTACTTTCGGAAATGCCACAGAATTGATAATATCAATATATGCATTGCGAAGAGGAATGATACGGGTCGTTCAACAGTCATTATTAGGTTCAATTTTGTCAAATATGTTGTTAGTACTTGGATGTGCCTTTTTTGCGGGTGGTGTTGTGGTTCCTAAGAGGGAGCAGGTTTTCAGTAAGGCATCTGCTACAGTGAATTCTGGATTGCTATTAATGGCAGTAATGGGACTTCTGTTTCCTGCTGTCCTTCGCTCCACACATACAGAGTTGCACTCTGGAAAGTCAGAGTTGGCTCTTTCAAGATTTAGTAGTGGAGTTATGTTGGTGGCATATGCTGCCTATCTTGTTTTTCAGTTGAAAAGCGACAAGAACTTATATCATCCGGTTGATAATGTTGATGATGTTGATGAGGTGGATAATGAAGAAAATTCTGATGATGAAGAAGCTCCTGAGATTTCTATGTGGGAATCCATTATTTGGCTGTCTATCTTGACCATTTGGATCTCCATCCTTTCTGAATACTTAGTTAATGCAATAGAGGGGGCATCAATTGCCATGAACATACCAGTAGCATTCATTAGTGTTATCCTACTGCCAATTGTTGGGAATGCTGCAGAGCATGCAGGTGCCATCATGTTTGCCATCAAAGACAAGCTTGACATTTCTTTGGGAGTCGCTATAGGATCGTCTACACAGATATCTATGTTCGGGATTCCGTTTTGTGTGATCATTGGCTGGATCATGGGCTGCCCTATGGATTTGAATTTTCAACTGTTTGAAACCGCCACACTCTTCATCACGGTCATTGTTGTGGCCTTCATGTTGCAGGATGGAACTTCTAATTATCTCAAAGGACTGATGCTTATTCTCTGCTACCTGATAGTAGCTGCGAGTTTCTTTGTACATATTGATCCAACTTCAGTTGAAGATAAGACCCGAAAACCTGGTGAATGA 1392 42.74 MDGFRSSDIKPSVGRHSHAEMGSLGEKTVLEFEDESLVSPVSLTRKKFSIEGPLHSPSLGGGSQKFSYINMTNRVFRSIKIVVFSAKINCLMPFGPLAILVSSLSGHHGWVFLLSLLGIIPLAERLGYATEQLACFTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGVVVPKREQVFSKASATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSGVMLVAYAAYLVFQLKSDKNLYHPVDNVDDVDEVDNEENSDDEEAPEISMWESIIWLSILTIWISILSEYLVNAIEGASIAMNIPVAFISVILLPIVGNAAEHAGAIMFAIKDKLDISLGVAIGSSTQISMFGIPFCVIIGWIMGCPMDLNFQLFETATLFITVIVVAFMLQDGTSNYLKGLMLILCYLIVAASFFVHIDPTSVEDKTRKPGE 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40792720 40799311 - Sed0018346.1 Sed05g3038 715664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3038 463 FunFam Vacuolar cation/proton exchanger 291 447 - -
Sed05g3038 463 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 68 451 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Sed05g3038 463 Pfam Sodium/calcium exchanger protein 109 265 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g3038 463 Pfam Sodium/calcium exchanger protein 303 445 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g3038 463 NCBIfam calcium/proton exchanger 92 446 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Sed05g3038 463 FunFam Vacuolar cation/proton exchanger 139 278 - -
Sed05g3038 463 Gene3D - 137 280 IPR044880 -
Sed05g3038 463 Gene3D - 290 447 IPR044880 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0606 Sed-Chr1:4335970 Sed05g3038 Sed-Chr5:40792720 3.10E-212 dispersed
Sed05g3038 Sed-Chr5:40792720 Sed08g2887 Sed-Chr8:39978048 6.40E-155 dispersed
Sed01g0605 Sed-Chr1:4335970 Sed05g3038 Sed-Chr5:40792720 1.10E-192 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3038 K07300 - csv:101215915 757.673