Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3046 ATGGGTGTCATGTGTGATTTTTGTGGGGATCAAAGGTCAATGGTTTACTGCCGATCGGATGCTGCTTGTTTGTGCTTATCGTGTGATCGCAATGTCCACTCTGCTAATGCCTTGTCGAGGCGCCATACAAGAACGCTGTTGTGCGAAAGATGCCATTTGCAACCTGCCTCGGTGAGATGTATTGAAGAGAAGGTTTCTCTGTGTCAAAATTGTGACTGGACAGGTCATGGCACGTCTACGACTTCATCGTCACACAAGAGGCAAACCATCAATTGTTACTCTGGTTGTCCATCAGCTGCAGAGCTGTCTTCTATCTGGTCCTTTGTTTTGGATCTTCCCTCTGTAAATGATGCTTGTGAGAAAGAGATGGGATTGATGAGCCTTGCTGAGATTGACATGACGGGTGCCTGGAACCTGTCGGAAAACAATGCCAGTCAACCAATTCCCAGGTCAACTGAAGCGGGGAATGTTAGCAGCAGGGAGAAGTCAAATGTCTTGGTTGGATCATCTTCAGATAAGCCAGTTGAATTGACTAATATGGCTTTACCAGAGTTATGCTGTCCTGGAACAAAATTTGCCGGATTCTGCGGTGATGACGAGGACATCTACAAGGAGTTTGATATGGATGAAATGGATTTGAGTCTCGAAAATTATGAGGAGCTATTTGGTATGAGCCTTAATCATTCTGAAGAACTTTTCGAGAAGGGTGGAATTGATAACCTTTTCAACGCCAAAGGCCTGTCTTTTGACGATTCCGCTTGCCACAATGCAGTTGCTTCAGAGGGGTCTTCGGTCGGAGTGGTCAAACCAGTGCATCCAGCCTGCAGCAATGGTGCATCTGCTGACTCAATGATGAGCACTAAAACTGAACCAATCCTCTGTTACAATTCAAGGCAAGCACAATCAGGCGTTTCGTTTTCTCGCCTTACTGGTGAGAGTAGTGCTGGTGATTATCAAGACTGTGGAGCCTCTTCAATGCTTCTAATGGGAGAGCCACCTTGGTGTGCTCTCTCTGATCGTAACAATGCCGTTCTGCGTTACAAGGAGAAAAAGAAGATGCGCCAGTTTGAGAAAAAAGTTAGATACGCTAATCGCAAAGCGAGAGCGGATGTGAGAAGGCGAGTGAAGGGACGCTTTGTGAAGGCTGGAGAGGCGTATGATTACGACCCACTGAGCCAGGCTAGAAGCTGCTGA 1194 46.73 MGVMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHTRTLLCERCHLQPASVRCIEEKVSLCQNCDWTGHGTSTTSSSHKRQTINCYSGCPSAAELSSIWSFVLDLPSVNDACEKEMGLMSLAEIDMTGAWNLSENNASQPIPRSTEAGNVSSREKSNVLVGSSSDKPVELTNMALPELCCPGTKFAGFCGDDEDIYKEFDMDEMDLSLENYEELFGMSLNHSEELFEKGGIDNLFNAKGLSFDDSACHNAVASEGSSVGVVKPVHPACSNGASADSMMSTKTEPILCYNSRQAQSGVSFSRLTGESSAGDYQDCGASSMLLMGEPPWCALSDRNNAVLRYKEKKKMRQFEKKVRYANRKARADVRRRVKGRFVKAGEAYDYDPLSQARSC 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40848055 40852615 + Sed0018987.3 Sed05g3046 715672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3046 397 ProSiteProfiles CCT domain profile. 340 382 IPR010402 GO:0005515(InterPro)
Sed05g3046 397 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270(InterPro)
Sed05g3046 397 Pfam CCT motif 340 382 IPR010402 GO:0005515(InterPro)
Sed05g3046 397 SMART bboxneu5 48 90 IPR000315 GO:0008270(InterPro)
Sed05g3046 397 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
Sed05g3046 397 CDD Bbox1_BBX-like 5 47 IPR049808 -
Sed05g3046 397 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Sed05g3046 397 CDD Bbox1_BBX-like 47 90 IPR049808 -
Sed05g3046 397 MobiDBLite consensus disorder prediction 142 170 - -
Sed05g3046 397 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 387 - -
Sed05g3046 397 Pfam ANCHR-like B-box zinc-binding domain 47 86 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3046 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3044 Sed-Chr5:40848055 Sed05g3046 Sed-Chr5:40848055 5.10E-201 dispersed
Sed05g3046 Sed-Chr5:40848055 Sed05g3084 Sed-Chr5:41072192 3.80E-23 dispersed
Sed05g3045 Sed-Chr5:40848055 Sed05g3046 Sed-Chr5:40848055 5.10E-201 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed03g1659 . 1 331 C2C2-CO-like Transcription Factor Family AT5G24930 63.8 2.7e-76 283.5
Sed11g1127 . 1 307 C2C2-CO-like Transcription Factor Family AT5G24930 56.2 3.7e-65 246.5
Sed01g0594 . 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 55.1 6.5e-89 325.5
Sed01g0596 . 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 55.1 6.5e-89 325.5
Sed01g0595 . 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 55.1 6.5e-89 325.5
Sed01g0601 . 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 55.1 6.5e-89 325.5
Sed05g3044 . 1 396 C2C2-CO-like Transcription Factor Family AT3G07650 56.6 2.1e-87 320.5
Sed05g3045 . 1 396 C2C2-CO-like Transcription Factor Family AT3G07650 56.6 2.1e-87 320.5
Sed05g3046 . 1 396 C2C2-CO-like Transcription Factor Family AT3G07650 56.6 2.1e-87 320.5
Sed05g2113 . 1 397 C2C2-CO-like Transcription Factor Family AT3G07650 53.3 1.1e-80 298.1
Sed05g2114 . 1 397 C2C2-CO-like Transcription Factor Family AT3G07650 53.3 1.1e-80 298.1
Sed04g3748 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.3 1.4e-80 297.7
Sed04g3749 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.3 1.4e-80 297.7
Sed04g3750 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.3 1.4e-80 297.7
Sed01g0597 . 1 374 C2C2-CO-like Transcription Factor Family AT3G07650 52.2 2.0e-69 260.8
Sed01g0602 . 1 374 C2C2-CO-like Transcription Factor Family AT3G07650 52.2 2.0e-69 260.8
Sed01g0603 . 1 374 C2C2-CO-like Transcription Factor Family AT3G07650 52.2 2.0e-69 260.8
Sed01g0599 . 1 374 C2C2-CO-like Transcription Factor Family AT3G07650 52.2 2.0e-69 260.8
Sed01g0600 . 85 296 C2C2-CO-like Transcription Factor Family AT3G07650 58.1 9.4e-56 215.3
Sed01g0598 . 85 296 C2C2-CO-like Transcription Factor Family AT3G07650 58.1 9.4e-56 215.3
Sed01g0594 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0596 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0595 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0601 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed05g3044 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g3045 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g3046 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g2113 . 1 397 C2C2-CO-like Transcription Factor Family AT5G48250 53.9 2.7e-79 293.5
Sed05g2114 . 1 397 C2C2-CO-like Transcription Factor Family AT5G48250 53.9 2.7e-79 293.5
Sed04g3748 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed04g3749 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed04g3750 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed01g0597 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0602 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0603 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0599 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0600 . 100 296 C2C2-CO-like Transcription Factor Family AT5G48250 59.7 4.2e-56 216.5
Sed01g0598 . 100 296 C2C2-CO-like Transcription Factor Family AT5G48250 59.7 4.2e-56 216.5
Sed01g0594 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0596 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0595 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed01g0601 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 55.2 1.0e-86 318.2
Sed05g3044 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g3045 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g3046 . 1 396 C2C2-CO-like Transcription Factor Family AT5G48250 56.3 6.7e-86 315.5
Sed05g2113 . 1 397 C2C2-CO-like Transcription Factor Family AT5G48250 53.9 2.7e-79 293.5
Sed05g2114 . 1 397 C2C2-CO-like Transcription Factor Family AT5G48250 53.9 2.7e-79 293.5
Sed04g3748 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed04g3749 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed04g3750 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 51.6 1.4e-78 291.2
Sed01g0597 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0602 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0603 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0599 . 1 374 C2C2-CO-like Transcription Factor Family AT5G48250 53.3 1.7e-68 257.7
Sed01g0600 . 100 296 C2C2-CO-like Transcription Factor Family AT5G48250 59.7 4.2e-56 216.5
Sed01g0598 . 100 296 C2C2-CO-like Transcription Factor Family AT5G48250 59.7 4.2e-56 216.5
Sed04g3907 . 1 198 C2C2-CO-like Transcription Factor Family AT1G75540 56.9 4.8e-51 199.5
Sed04g1531 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 50.3 1.7e-74 277.3
Sed13g0882 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 62.2 8.2e-55 211.1
Sed07g1631 . 1 176 C2C2-CO-like Transcription Factor Family AT2G21320 63.1 1.6e-53 206.8
Sed10g0979 . 1 144 C2C2-CO-like Transcription Factor Family AT2G21320 65.1 6.7e-49 191.4
Sed13g0882 . 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 61.2 2.3e-55 213.0
Sed07g1631 . 1 176 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 1.3e-53 207.2
Sed10g0979 . 1 143 C2C2-CO-like Transcription Factor Family AT4G38960 67.8 3.4e-51 199.1
Sed04g3907 . 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 56.3 2.4e-52 203.4
Sed03g1716 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 50.2 1.6e-43 174.1
Sed03g1717 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 50.2 1.6e-43 174.1
Sed05g3539 . 1 177 C2C2-CO-like Transcription Factor Family AT4G39070 52.6 2.3e-42 170.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38675 PF06203 CCT 1.00E-14 CL0281 Sed TF