Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3046 ATGGGTGTCATGTGTGATTTTTGTGGGGATCAAAGGTCAATGGTTTACTGCCGATCGGATGCTGCTTGTTTGTGCTTATCGTGTGATCGCAATGTCCACTCTGCTAATGCCTTGTCGAGGCGCCATACAAGAACGCTGTTGTGCGAAAGATGCCATTTGCAACCTGCCTCGGTGAGATGTATTGAAGAGAAGGTTTCTCTGTGTCAAAATTGTGACTGGACAGGTCATGGCACGTCTACGACTTCATCGTCACACAAGAGGCAAACCATCAATTGTTACTCTGGTTGTCCATCAGCTGCAGAGCTGTCTTCTATCTGGTCCTTTGTTTTGGATCTTCCCTCTGTAAATGATGCTTGTGAGAAAGAGATGGGATTGATGAGCCTTGCTGAGATTGACATGACGGGTGCCTGGAACCTGTCGGAAAACAATGCCAGTCAACCAATTCCCAGGTCAACTGAAGCGGGGAATGTTAGCAGCAGGGAGAAGTCAAATGTCTTGGTTGGATCATCTTCAGATAAGCCAGTTGAATTGACTAATATGGCTTTACCAGAGTTATGCTGTCCTGGAACAAAATTTGCCGGATTCTGCGGTGATGACGAGGACATCTACAAGGAGTTTGATATGGATGAAATGGATTTGAGTCTCGAAAATTATGAGGAGCTATTTGGTATGAGCCTTAATCATTCTGAAGAACTTTTCGAGAAGGGTGGAATTGATAACCTTTTCAACGCCAAAGGCCTGTCTTTTGACGATTCCGCTTGCCACAATGCAGTTGCTTCAGAGGGGTCTTCGGTCGGAGTGGTCAAACCAGTGCATCCAGCCTGCAGCAATGGTGCATCTGCTGACTCAATGATGAGCACTAAAACTGAACCAATCCTCTGTTACAATTCAAGGCAAGCACAATCAGGCGTTTCGTTTTCTCGCCTTACTGGTGAGAGTAGTGCTGGTGATTATCAAGACTGTGGAGCCTCTTCAATGCTTCTAATGGGAGAGCCACCTTGGTGTGCTCTCTCTGATCGTAACAATGCCGTTCTGCGTTACAAGGAGAAAAAGAAGATGCGCCAGTTTGAGAAAAAAGTTAGATACGCTAATCGCAAAGCGAGAGCGGATGTGAGAAGGCGAGTGAAGGGACGCTTTGTGAAGGCTGGAGAGGCGTATGATTACGACCCACTGAGCCAGGCTAGAAGCTGCTGA 1194 46.73 MGVMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHTRTLLCERCHLQPASVRCIEEKVSLCQNCDWTGHGTSTTSSSHKRQTINCYSGCPSAAELSSIWSFVLDLPSVNDACEKEMGLMSLAEIDMTGAWNLSENNASQPIPRSTEAGNVSSREKSNVLVGSSSDKPVELTNMALPELCCPGTKFAGFCGDDEDIYKEFDMDEMDLSLENYEELFGMSLNHSEELFEKGGIDNLFNAKGLSFDDSACHNAVASEGSSVGVVKPVHPACSNGASADSMMSTKTEPILCYNSRQAQSGVSFSRLTGESSAGDYQDCGASSMLLMGEPPWCALSDRNNAVLRYKEKKKMRQFEKKVRYANRKARADVRRRVKGRFVKAGEAYDYDPLSQARSC 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40848055 40852615 + Sed0018987.3 Sed05g3046 715672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3046 397 ProSiteProfiles CCT domain profile. 340 382 IPR010402 GO:0005515(InterPro)
Sed05g3046 397 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270(InterPro)
Sed05g3046 397 Pfam CCT motif 340 382 IPR010402 GO:0005515(InterPro)
Sed05g3046 397 SMART bboxneu5 48 90 IPR000315 GO:0008270(InterPro)
Sed05g3046 397 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
Sed05g3046 397 CDD Bbox1_BBX-like 5 47 IPR049808 -
Sed05g3046 397 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Sed05g3046 397 CDD Bbox1_BBX-like 47 90 IPR049808 -
Sed05g3046 397 MobiDBLite consensus disorder prediction 142 170 - -
Sed05g3046 397 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 387 - -
Sed05g3046 397 Pfam ANCHR-like B-box zinc-binding domain 47 86 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3044 Sed-Chr5:40848055 Sed05g3046 Sed-Chr5:40848055 5.10E-201 dispersed
Sed05g3046 Sed-Chr5:40848055 Sed05g3084 Sed-Chr5:41072192 3.80E-23 dispersed
Sed05g3045 Sed-Chr5:40848055 Sed05g3046 Sed-Chr5:40848055 5.10E-201 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38675 PF06203 CCT 1.00E-14 CL0281 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3046 - - - 0.0