Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3047 ATGGGTCTCTCCAGCCTTCCTGCCCCATCTGAAGGAGTTTTGGGTCTGATCCTTGTAAATACAGCCTTGTCAATTTCCATCTTCAAAGGCCTAGTTCGGTCGATCCTTCATGTCGTTGGCATTCGTCTTTCGTCGTCGCCAGCTTCCATGGAGAATGCTCCTGAATCCATAGAAATCTGTCTTATTCCGAATGGAAGTTACATTCAAGAGTTTCGCAGCCGAATCCCAGCAATCCTGTTCGACAAAGTTCGTAGCTGCAAATGGCTAGAACATGACTGCTCAGTCTGCCTAACCCAGTTTGAACCTGAATCAGAGATAAACCATTTATCTTGTGGACATCTCTTCCACAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAATATCACGTGCCCGCTGTGTCGAACTCCATTAATGCTCGAAGAAGAGATAGCTTCCTGCTTCTGA 447 46.98 MGLSSLPAPSEGVLGLILVNTALSISIFKGLVRSILHVVGIRLSSSPASMENAPESIEICLIPNGSYIQEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNITCPLCRTPLMLEEEIASCF 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40855263 40855709 + Sed0015740.1 Sed05g3047 715673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3047 148 PANTHER - 1 142 IPR044249 -
Sed05g3047 148 Pfam Ring finger domain 92 135 IPR001841 -
Sed05g3047 148 SUPERFAMILY RING/U-box 81 140 - -
Sed05g3047 148 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 139 IPR013083 -
Sed05g3047 148 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
Sed05g3047 148 SMART ring_2 93 134 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3047 Sed-Chr5:40855263 Sed09g0036 Sed-Chr9:317372 2.80E-11 dispersed
Sed01g0593 Sed-Chr1:4307429 Sed05g3047 Sed-Chr5:40855263 3.80E-72 wgd
Sed04g3747 Sed-Chr4:46195646 Sed05g3047 Sed-Chr5:40855263 1.30E-48 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3047 K16285 - csv:101216645 278.87