Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3059 ATGGCGGATTCGGATAACGAATCGGGAGGTGGGAACGGCGAGTTATCGACGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATAATGAAGAAGGCGTTACCGGCGAACGCCAAGATCTCGAAAGATGCGAAGGAAACCGTGCAAGAGTGCGTATCGGAGTTCATAAGCTTCATTACCGGAGAGGCGTCGGATAAGTGCCAGAGGGAGAAGAGGAAGACGATCAACGGCGACGATTTGCTCTGGGCCATGACCACGCTCGGATTCGAAGAGTATGTTGAGCCGCTCAAGACTTATCTTCAAAAGTACAGAGAAATCGAAGGGGAGAAAACCACGACCGGTCGACAAGGGGAAAAAGACGGCGGTTCCGGTGGTGGTGCCGGCGCCGGCGGATTTAACGGAGGGGGTGGAATGTACGGTGGGATGCTGATGATGGGGCATCATCAGGGAGGTGTTTATGGCGGTGGTGGCGGTGGATTTCATCATATGGGAGGAAGTGGTGGTTCCGGCACCGGTCACCGGTAA 534 54.87 MADSDNESGGGNGELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREIEGEKTTTGRQGEKDGGSGGGAGAGGFNGGGGMYGGMLMMGHHQGGVYGGGGGGFHHMGGSGGSGTGHR 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40884007 40885504 - Sed0015461.1 Sed05g3059 715685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3059 177 MobiDBLite consensus disorder prediction 1 21 - -
Sed05g3059 177 MobiDBLite consensus disorder prediction 112 131 - -
Sed05g3059 177 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Sed05g3059 177 MobiDBLite consensus disorder prediction 1 15 - -
Sed05g3059 177 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Sed05g3059 177 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Sed05g3059 177 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Sed05g3059 177 Gene3D Histone, subunit A 13 129 IPR009072 GO:0046982(InterPro)
Sed05g3059 177 FunFam Nuclear transcription factor Y subunit B-3 12 132 - -
Sed05g3059 177 ProSitePatterns NF-YB/HAP3 subunit signature. 54 70 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g3059 177 SUPERFAMILY Histone-fold 20 123 IPR009072 GO:0046982(InterPro)
Sed05g3059 177 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 123 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3059 Sed-Chr5:40884007 Sed07g1707 Sed-Chr7:15719286 2.70E-45 dispersed
Sed01g0572 Sed-Chr1:4274438 Sed05g3059 Sed-Chr5:40884007 1.50E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38676 PF00808 CBFD_NFYB_HMF 1.50E-27 CL0012 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3059 K08065 - csv:101219076 216.853