Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3059 ATGGCGGATTCGGATAACGAATCGGGAGGTGGGAACGGCGAGTTATCGACGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATAATGAAGAAGGCGTTACCGGCGAACGCCAAGATCTCGAAAGATGCGAAGGAAACCGTGCAAGAGTGCGTATCGGAGTTCATAAGCTTCATTACCGGAGAGGCGTCGGATAAGTGCCAGAGGGAGAAGAGGAAGACGATCAACGGCGACGATTTGCTCTGGGCCATGACCACGCTCGGATTCGAAGAGTATGTTGAGCCGCTCAAGACTTATCTTCAAAAGTACAGAGAAATCGAAGGGGAGAAAACCACGACCGGTCGACAAGGGGAAAAAGACGGCGGTTCCGGTGGTGGTGCCGGCGCCGGCGGATTTAACGGAGGGGGTGGAATGTACGGTGGGATGCTGATGATGGGGCATCATCAGGGAGGTGTTTATGGCGGTGGTGGCGGTGGATTTCATCATATGGGAGGAAGTGGTGGTTCCGGCACCGGTCACCGGTAA 534 54.87 MADSDNESGGGNGELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREIEGEKTTTGRQGEKDGGSGGGAGAGGFNGGGGMYGGMLMMGHHQGGVYGGGGGGFHHMGGSGGSGTGHR 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40884007 40885504 - Sed0015461.1 Sed05g3059 715685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3059 177 MobiDBLite consensus disorder prediction 1 21 - -
Sed05g3059 177 MobiDBLite consensus disorder prediction 112 131 - -
Sed05g3059 177 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Sed05g3059 177 MobiDBLite consensus disorder prediction 1 15 - -
Sed05g3059 177 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Sed05g3059 177 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Sed05g3059 177 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Sed05g3059 177 Gene3D Histone, subunit A 13 129 IPR009072 GO:0046982(InterPro)
Sed05g3059 177 FunFam Nuclear transcription factor Y subunit B-3 12 132 - -
Sed05g3059 177 ProSitePatterns NF-YB/HAP3 subunit signature. 54 70 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g3059 177 SUPERFAMILY Histone-fold 20 123 IPR009072 GO:0046982(InterPro)
Sed05g3059 177 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 123 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3059 K08065 - - csv:101219076 216.853
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3059 Sed-Chr5:40884007 Sed07g1707 Sed-Chr7:15719286 2.70E-45 dispersed
Sed01g0572 Sed-Chr1:4274438 Sed05g3059 Sed-Chr5:40884007 1.50E-60 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g2904 . 51 151 CCAAT-HAP3 Transcription Factor Family AT5G47670 84.2 6.6e-47 185.3
Sed05g3059 . 8 113 CCAAT-HAP3 Transcription Factor Family AT5G47670 66.0 1.1e-38 157.9
Sed01g0572 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 4.7e-37 152.5
Sed08g2902 . 19 114 CCAAT-HAP3 Transcription Factor Family AT5G47670 69.8 1.1e-36 151.4
Sed08g2904 . 16 173 CCAAT-HAP3 Transcription Factor Family AT1G21970 61.3 1.3e-50 197.6
Sed01g0572 . 1 138 CCAAT-HAP3 Transcription Factor Family AT4G14540 79.2 2.2e-57 219.5
Sed05g3059 . 1 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 89.0 3.7e-57 218.8
Sed08g2902 . 19 146 CCAAT-HAP3 Transcription Factor Family AT4G14540 70.5 2.9e-46 182.6
Sed07g1707 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.4 8.5e-46 181.0
Sed04g1328 . 14 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.0 7.2e-45 177.9
Sed04g1329 . 14 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.0 7.2e-45 177.9
Sed04g1326 . 14 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.0 7.2e-45 177.9
Sed04g1327 . 14 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.0 7.2e-45 177.9
Sed04g1330 . 14 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.0 7.2e-45 177.9
Sed02g0739 . 11 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 76.3 7.2e-45 177.9
Sed02g0740 . 11 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 76.3 7.2e-45 177.9
Sed13g0981 . 79 173 CCAAT-HAP3 Transcription Factor Family AT4G14540 88.4 4.0e-43 172.2
Sed07g2408 . 9 119 CCAAT-HAP3 Transcription Factor Family AT4G14540 73.9 1.5e-42 170.2
Sed07g2409 . 9 119 CCAAT-HAP3 Transcription Factor Family AT4G14540 73.9 1.5e-42 170.2
Sed04g2752 . 24 121 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.6 5.7e-42 168.3
Sed04g2753 . 24 121 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.6 5.7e-42 168.3
Sed04g2754 . 24 121 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.6 5.7e-42 168.3
Sed04g2755 . 24 121 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.6 5.7e-42 168.3
Sed07g0338 . 46 141 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.0 5.0e-38 155.2
Sed09g1217 . 39 140 CCAAT-HAP3 Transcription Factor Family AT4G14540 70.6 1.5e-37 153.7
Sed07g2408 . 1 120 CCAAT-HAP3 Transcription Factor Family AT2G38880 78.3 2.7e-49 192.6
Sed07g2409 . 1 120 CCAAT-HAP3 Transcription Factor Family AT2G38880 78.3 2.7e-49 192.6
Sed04g2752 . 1 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 77.9 3.5e-49 192.2
Sed04g2753 . 1 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 77.9 3.5e-49 192.2
Sed04g2754 . 1 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 77.9 3.5e-49 192.2
Sed04g2755 . 1 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 77.9 3.5e-49 192.2
Sed02g0739 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 78.3 6.6e-48 188.0
Sed02g0740 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 78.3 6.6e-48 188.0
Sed04g1328 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 76.5 3.3e-47 185.7
Sed04g1329 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 76.5 3.3e-47 185.7
Sed04g1326 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 76.5 3.3e-47 185.7
Sed04g1327 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 76.5 3.3e-47 185.7
Sed04g1330 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 76.5 3.3e-47 185.7
Sed05g3059 . 1 109 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.9 9.9e-44 174.1
Sed01g0572 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.7 1.1e-42 170.6
Sed08g2902 . 19 109 CCAAT-HAP3 Transcription Factor Family AT2G38880 82.4 4.6e-41 165.2
Sed07g1707 . 17 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 74.7 1.8e-40 163.3
Sed13g0981 . 73 168 CCAAT-HAP3 Transcription Factor Family AT2G38880 74.0 1.3e-38 157.1
Sed07g0338 . 43 137 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.6 8.1e-38 154.5
Sed09g1217 . 33 136 CCAAT-HAP3 Transcription Factor Family AT2G38880 68.9 5.3e-37 151.8
Sed09g1217 . 43 154 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.1 7.9e-44 174.5
Sed07g0338 . 44 147 CCAAT-HAP3 Transcription Factor Family AT2G47810 79.0 7.4e-42 167.9
Sed08g2902 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 79.2 3.7e-41 165.6
Sed01g0572 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 7.7e-39 157.9
Sed05g3059 . 14 113 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 1.0e-38 157.5
Sed07g1707 . 21 120 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 3.2e-37 152.5
Sed02g0739 . 24 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.0 4.2e-37 152.1
Sed02g0740 . 24 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.0 4.2e-37 152.1
Sed13g0981 . 79 173 CCAAT-HAP3 Transcription Factor Family AT2G47810 73.7 7.2e-37 151.4
Sed02g0739 . 1 173 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.4 2.2e-63 239.6
Sed04g1328 . 1 187 CCAAT-HAP3 Transcription Factor Family AT2G37060 69.1 3.5e-61 232.3
Sed04g1327 . 1 187 CCAAT-HAP3 Transcription Factor Family AT2G37060 69.1 3.5e-61 232.3
Sed04g1329 . 1 149 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.2 1.2e-58 223.8
Sed04g1326 . 1 149 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.2 1.2e-58 223.8
Sed04g1330 . 1 149 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.2 1.2e-58 223.8
Sed02g0740 . 1 159 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.8 4.7e-58 221.9
Sed07g2409 . 10 167 CCAAT-HAP3 Transcription Factor Family AT2G37060 69.8 4.1e-54 208.8
Sed07g2408 . 10 168 CCAAT-HAP3 Transcription Factor Family AT2G37060 70.0 2.7e-53 206.1
Sed04g2752 . 12 149 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.4 1.0e-52 204.1
Sed04g2753 . 12 149 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.4 1.0e-52 204.1
Sed04g2754 . 12 149 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.4 1.0e-52 204.1
Sed04g2755 . 12 149 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.4 1.0e-52 204.1
Sed01g0572 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 5.0e-44 175.3
Sed05g3059 . 6 112 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.1 1.1e-43 174.1
Sed07g1707 . 18 119 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.5 4.7e-42 168.7
Sed08g2902 . 19 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 80.0 1.5e-40 163.7
Sed13g0981 . 79 170 CCAAT-HAP3 Transcription Factor Family AT2G37060 80.4 8.3e-39 157.9
Sed07g0338 . 45 147 CCAAT-HAP3 Transcription Factor Family AT2G37060 70.9 2.0e-37 153.3
Sed09g1217 . 44 146 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 1.3e-36 150.6
Sed05g3059 . 18 119 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 2.1e-44 176.8
Sed04g1328 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.4 6.2e-44 175.3
Sed04g1329 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.4 6.2e-44 175.3
Sed04g1326 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.4 6.2e-44 175.3
Sed04g1327 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.4 6.2e-44 175.3
Sed04g1330 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.4 6.2e-44 175.3
Sed02g0739 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.4 1.1e-43 174.5
Sed02g0740 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.4 1.1e-43 174.5
Sed07g1707 . 17 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 77.3 1.4e-43 174.1
Sed01g0572 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 1.4e-43 174.1
Sed08g2902 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.3 7.6e-42 168.3
Sed13g0981 . 79 173 CCAAT-HAP3 Transcription Factor Family AT2G13570 82.1 3.8e-41 166.0
Sed04g2752 . 29 129 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.3 7.1e-40 161.8
Sed04g2753 . 29 129 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.3 7.1e-40 161.8
Sed04g2754 . 29 129 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.3 7.1e-40 161.8
Sed04g2755 . 29 129 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.3 7.1e-40 161.8
Sed07g2408 . 13 127 CCAAT-HAP3 Transcription Factor Family AT2G13570 64.3 1.2e-39 161.0
Sed07g2409 . 13 127 CCAAT-HAP3 Transcription Factor Family AT2G13570 64.3 1.2e-39 161.0
Sed07g0338 . 46 146 CCAAT-HAP3 Transcription Factor Family AT2G13570 73.3 4.6e-39 159.1
Sed09g1217 . 45 145 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.3 6.7e-38 155.2
Sed05g3059 . 1 118 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.0 8.0e-51 198.0
Sed01g0572 . 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.6 1.0e-50 197.6
Sed08g2902 . 19 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 86.9 6.5e-45 178.3
Sed07g2408 . 10 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 68.4 7.2e-44 174.9
Sed07g2409 . 10 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 68.4 7.2e-44 174.9
Sed07g1707 . 21 142 CCAAT-HAP3 Transcription Factor Family AT5G47640 69.7 1.2e-43 174.1
Sed02g0739 . 25 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 82.7 2.1e-43 173.3
Sed02g0740 . 25 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 82.7 2.1e-43 173.3
Sed04g2752 . 29 141 CCAAT-HAP3 Transcription Factor Family AT5G47640 73.5 2.7e-43 172.9
Sed04g2753 . 29 141 CCAAT-HAP3 Transcription Factor Family AT5G47640 73.5 2.7e-43 172.9
Sed04g2754 . 29 141 CCAAT-HAP3 Transcription Factor Family AT5G47640 73.5 2.7e-43 172.9
Sed04g2755 . 29 141 CCAAT-HAP3 Transcription Factor Family AT5G47640 73.5 2.7e-43 172.9
Sed04g1328 . 25 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.6 4.7e-43 172.2
Sed04g1329 . 25 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.6 4.7e-43 172.2
Sed04g1326 . 25 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.6 4.7e-43 172.2
Sed04g1327 . 25 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.6 4.7e-43 172.2
Sed04g1330 . 25 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.6 4.7e-43 172.2
Sed13g0981 . 65 173 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.1 4.4e-41 165.6
Sed07g0338 . 46 142 CCAAT-HAP3 Transcription Factor Family AT5G47640 77.3 5.4e-39 158.7
Sed09g1217 . 45 141 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 2.7e-38 156.4
Sed02g0739 . 12 173 CCAAT-HAP3 Transcription Factor Family AT3G53340 75.4 1.8e-60 229.9
Sed04g1328 . 12 159 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.4 4.3e-59 225.3
Sed04g1329 . 12 159 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.4 4.3e-59 225.3
Sed04g1326 . 12 159 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.4 4.3e-59 225.3
Sed04g1327 . 12 159 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.4 4.3e-59 225.3
Sed04g1330 . 12 159 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.4 4.3e-59 225.3
Sed02g0740 . 12 159 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.4 3.7e-58 222.2
Sed07g2409 . 10 166 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.4 6.4e-55 211.5
Sed07g2408 . 10 167 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.3 9.3e-54 207.6
Sed04g2752 . 12 138 CCAAT-HAP3 Transcription Factor Family AT3G53340 80.3 2.7e-53 206.1
Sed04g2753 . 12 138 CCAAT-HAP3 Transcription Factor Family AT3G53340 80.3 2.7e-53 206.1
Sed04g2754 . 12 138 CCAAT-HAP3 Transcription Factor Family AT3G53340 80.3 2.7e-53 206.1
Sed04g2755 . 12 138 CCAAT-HAP3 Transcription Factor Family AT3G53340 80.3 2.7e-53 206.1
Sed01g0572 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 1.3e-44 177.2
Sed05g3059 . 6 121 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.2 1.8e-44 176.8
Sed07g1707 . 18 119 CCAAT-HAP3 Transcription Factor Family AT3G53340 76.5 3.7e-42 169.1
Sed08g2902 . 19 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 81.1 5.3e-41 165.2
Sed13g0981 . 79 170 CCAAT-HAP3 Transcription Factor Family AT3G53340 79.3 1.4e-38 157.1
Sed07g0338 . 45 147 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.8 5.5e-38 155.2
Sed09g1217 . 44 146 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 3.6e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38676 PF00808 CBFD_NFYB_HMF 1.50E-27 CL0012 Sed TF