Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3071 ATGTTCCAGCCAAGCATTTTCGAAGAAAGTAAGCTCCTCTTAGACATGCCTCAACACACTTCCGAAAGCGATCTTGCTCGAATCCGAGACGATGACTTCGACAGTGCCACTAAATCCGGCAGCGACAACAACCCTGAACTCGCCTCCGGGGACGACCAGGACCCTCGTCCTAAAAAGAAGCGTTACCATCGACATACACAACATCAGATCCAAGAAATGGAATCCTTCTTCAAGGAATGTCCTCACCCTGATGACAAACAAAGGAAAGAATTAAGCAGGGAATTAGGGTTAGAGCCGTTGCAAGTCAAATTCTGGTTCCAAAATAAACGCACTCAAATGAAGAATCACCATGAGCGCCATGAGAACACTCAACTTAGAACCGAAAACGAGAAGCTTCGAGCTGATAACATGCGATACAGAGAAGCTCTTAGCAATGCTTCGTGCCCTAATTGTGGTGGCCCTACCGCCATTGGAGAAATGTCCTTCGATGAACATCACCTTAGACTCGAAAATGCCCGCCTTCGCGAAGAGATCGATCGAATTTCAGCAATAGCTGCAAAATACGTGGGGAAACCAGTTGTCAACTACCCTCTACTTTCTTCACCAGTTCCATCTCGCCCATTAGAGCTCGGAATGGGCAACTTTGGACCCCAAACAGGCCTCGGAGGAGACATCTACGGCTCGGCCGGTGACCTAATCCGGTCCATAAGCGCCCCGGCCGAAGCCGATAAACCAATGATCATCGAGCTCGCAGTTGCAGCGATAGAAGAGCTTACTAGAATGGCTCAAATGGGAGAGCCGTTGTGGATGAGTAGCCTGGATGGGTCCACTTATATGCTAAATGAAGATGAGTACTTAAGAACTTTTCCTAGAGGCATTGGGCCTAAGCCATCAGGGTTTAAAAGTGAAGCTTCTCGTGAATCTGCTGTTGTTATCATGAATCATATTAACCTTGTTGAGATTCTCATGGATGTTAATCAATGGTCGACTTTATTTTCTGGAATTGTGTCTAGAGCTATGACACTTGAGGTCTTATCAACTGGAGTTGCAGGAAATTATAATGGAGCTTTGCAAGTGATGACTTCGGAATTCCAAGTTCCATCCCCACTAGTTCCGACCCGAGAGAGCTACTACGTTCGATATTGCAAACAGCACGGGGACGGGACATGGGCAGTGGTGGACGTTTCATTGGACGATCTTCGCCCTGCTCCGGGACTAAGATGCAGAAGAAGACCTTCTGGTTGTTTGATCCAAGAAATGCCAAATGGTTATTCAAAGGTTACATGGGTTGAGCATGTTGAGGTTGATGATAGAGGAGTTCATAATCTTTACAAGCAGCTGGTGAGCTCTGGCCAAGCTTTTGGGGCCAAACGTTGGGTTACAACTTTAGATCGCCAATGTGAAAGACTTGCCAGTGCTATGGCTACCAACATACCTACCGGTGATGTTGGAGTGATAACAAATCAAGAAGGGAGAAAGAGCATGCTGAAGCTGGCTGAGAGAATGGTGATAAGCTTCTGTGCTGGAGTGAGCGCCTCCACAACTCACACATGGACTACTTTATCAGGTACGGGTGCGGACGATGTTCGGGTCATGACCCGAAAGAGCATCGATGACCCGGGAAGACCTCCTGGTATTGTCCTGAGTGCTGCAACTTCCTTCTGGCTTCCTGTTCCACCCAAGAGAATCTTCGATTTTCTCCGAGATGAGAACTCTCGCAATGAGTGGGACATTCTTTCGAATGGTGGAGTAGTTCAAGAAATGGCTCACATCGCCAACGGCCGTGACACTGGCAACTGCGTTTCTCTATTGCGTGTAAATGTAAGTTCTCATTTCTTTCATATTAACTACTCCTAA 1857 47.17 MFQPSIFEESKLLLDMPQHTSESDLARIRDDDFDSATKSGSDNNPELASGDDQDPRPKKKRYHRHTQHQIQEMESFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNHHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSSPVPSRPLELGMGNFGPQTGLGGDIYGSAGDLIRSISAPAEADKPMIIELAVAAIEELTRMAQMGEPLWMSSLDGSTYMLNEDEYLRTFPRGIGPKPSGFKSEASRESAVVIMNHINLVEILMDVNQWSTLFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSEFQVPSPLVPTRESYYVRYCKQHGDGTWAVVDVSLDDLRPAPGLRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGQAFGAKRWVTTLDRQCERLASAMATNIPTGDVGVITNQEGRKSMLKLAERMVISFCAGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLPVPPKRIFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNVSSHFFHINYS 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40989071 40995448 - Sed0020221.2 Sed05g3071 715697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3071 618 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 39 610 IPR042160 -
Sed05g3071 618 MobiDBLite consensus disorder prediction 1 68 - -
Sed05g3071 618 CDD homeodomain 59 117 IPR001356 GO:0003677(InterPro)
Sed05g3071 618 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677(InterPro)
Sed05g3071 618 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed05g3071 618 FunFam Homeobox-leucine zipper protein HDG1 46 132 - -
Sed05g3071 618 Pfam START domain 250 469 IPR002913 GO:0008289(InterPro)
Sed05g3071 618 SUPERFAMILY Homeodomain-like 46 116 IPR009057 -
Sed05g3071 618 Gene3D - 47 133 - -
Sed05g3071 618 Gene3D - 299 468 IPR023393 -
Sed05g3071 618 FunFam Homeobox-leucine zipper protein GLABRA 2 249 468 - -
Sed05g3071 618 SUPERFAMILY Bet v1-like 241 471 - -
Sed05g3071 618 Pfam Homeodomain 59 115 IPR001356 GO:0003677(InterPro)
Sed05g3071 618 CDD START_ArGLABRA2_like 244 468 - -
Sed05g3071 618 MobiDBLite consensus disorder prediction 22 37 - -
Sed05g3071 618 SUPERFAMILY Bet v1-like 488 607 - -
Sed05g3071 618 ProSiteProfiles START domain profile. 240 472 IPR002913 GO:0008289(InterPro)
Sed05g3071 618 SMART HOX_1 57 120 IPR001356 GO:0003677(InterPro)
Sed05g3071 618 Coils Coil 115 142 - -
Sed05g3071 618 SMART START_1 249 469 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2012 Sed-Chr5:33361764 Sed05g3071 Sed-Chr5:40989071 1.00E-282 dispersed
Sed05g3071 Sed-Chr5:40989071 Sed10g0620 Sed-Chr10:4136562 4.00E-221 dispersed
Sed05g3070 Sed-Chr5:40988413 Sed05g3071 Sed-Chr5:40989071 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38679 PF01852 START 3.00E-59 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3071 K09338 - csv:101214763 1155.58