Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3073 ATGAACGATTTGCTCACGAGATCACTGTTGGAGAAATTAGAAAATGGAAGTTTGTACATTTTTGACTCGTTTGTTAGCAATGCCAAAGGTGAGGCTTCTAGAGAAATTGATCTCGAGAAGGGAACGCGAGTTTTACTGAGCAATTCTGACATGGGAATGGAGGCTTTCAATAAGCAGATACAAGAGGTTGAAGTACAAGTAAATAAGCTATCTGGGCTTCTTATTAAATTGAAGGATGCTAATGAAGAATCGAAGTCTGTTACAAAAGCATTTGAGATGAAAGCTATCAAGAAACGTATGGAAAGAGATATTGAGGAAGTGGGAAAAATTGCACGTAATATCAAAGGGAAGCTAGAAGCTATAAATAAAGATAACTTAACCAATAGGCAGAAGCCTGAATGCAGGAAGGGAACGGCCATCGACAGAGCAAGAATGAACATTACAAATGCCTTGACAAAAAAATTCAAGGATCTGATGATAGAATTTCAGACCTTACGTCAAAGAATCCAAGATGAGTACCGCGAAGTCGTGGAAAGACGAGTTATTACAGTTACGGGTGCCAGACCGGATGAGACGATGATTGATCACCTTATAGAAACTGGAAACAGTGAGCAAATATTCCAAAATGCATTTGAACAAATGGGGCGAGGACAGGTTCTCAGTACCGTCGAAGAAATTCAAGAGCGACACGATGCAGTTAAAGAGATCGAGAAAAGGCTCTCGGAGTTGCATCAGATTTACCTTGACATGGCTGTTTTAGTGGAGGCCCAAGCAGAAATCTTGGATAACATAGAAAATCAGGTAACGAACGCAGTCGACCACGTTCGAACGGGAACCGATGCACTTCAGACAGCGAAGAGCTTACAGAAGAGATCGAGAAAATGTATGATGATTGCCATCATTTTGTTGCTCGTTATAGCCCTCATAATTGCCCTCTCAATTCTGAAGCCATGGAAGAAGTAA 963 40.91 MNDLLTRSLLEKLENGSLYIFDSFVSNAKGEASREIDLEKGTRVLLSNSDMGMEAFNKQIQEVEVQVNKLSGLLIKLKDANEESKSVTKAFEMKAIKKRMERDIEEVGKIARNIKGKLEAINKDNLTNRQKPECRKGTAIDRARMNITNALTKKFKDLMIEFQTLRQRIQDEYREVVERRVITVTGARPDETMIDHLIETGNSEQIFQNAFEQMGRGQVLSTVEEIQERHDAVKEIEKRLSELHQIYLDMAVLVEAQAEILDNIENQVTNAVDHVRTGTDALQTAKSLQKRSRKCMMIAIILLLVIALIIALSILKPWKK 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41018533 41021401 + Sed0007283.1 Sed05g3073 715699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3073 320 CDD SNARE_syntaxin1-like 222 284 - -
Sed05g3073 320 SMART tSNARE_6 218 285 IPR000727 -
Sed05g3073 320 Pfam Syntaxin 56 258 IPR006011 GO:0016020(InterPro)
Sed05g3073 320 Coils Coil 53 80 - -
Sed05g3073 320 SMART SynN_4 48 174 IPR006011 GO:0016020(InterPro)
Sed05g3073 320 CDD SynN 53 210 IPR006011 GO:0016020(InterPro)
Sed05g3073 320 SUPERFAMILY t-snare proteins 50 278 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Sed05g3073 320 Gene3D - 48 177 - -
Sed05g3073 320 FunFam Syntaxin 132 216 316 - -
Sed05g3073 320 Pfam SNARE domain 259 310 IPR000727 -
Sed05g3073 320 Gene3D - 214 316 - -
Sed05g3073 320 PANTHER SYNTAXIN 55 303 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed05g3073 320 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 223 285 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3073 Sed-Chr5:41018533 Sed12g1058 Sed-Chr12:6925863 4.70E-80 dispersed
Sed05g3073 Sed-Chr5:41018533 Sed02g0884 Sed-Chr2:46386456 2.90E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3073 K08486 - csv:101214355 501.13