Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3076 ATGGGGCGGCTTACTTCTTTTGTGTTGGCCACTTTGGTTGGTCTTCTAAGCCTGATAGGCTCAACTCAAGCTCAATTGCAGCTTGGTTTCTACTCCAAAAGCTGCCCAAACGCTGAGAAGATTGTGCTAGATTTCGTTCATCAGCATATCCACAATGCCCCTTCACTGGCTGCAACATTCATTAGAATGCACTTTCATGATTGTTTCGTCAGGGGTTGTGATGGATCTGTGCTTATAAATAGCACCTCAAACAACCAAGCTGAGAAGGATTCTCCACCAAATGAAACACTCAGAGGCTTTGATTTCATTGATAGAGTCAAAAGCTTACTTGAAGCTGAATGCCCTGAAGTTGTATCTTGTGCAGATGTTCTTTCCTTGGTTACAAGAGATTCCATTGTGGCCACAGGAGGTCCTTACTGGGAAGTTCCAACAGGGAGAAGGGATGGAGTAATTTCAAGGTCATCAGAAGCCTTGGCAAACATTCCAGCCCCATTTTTCAACTTCACATCACTCCAATCCAGTTTCGCGGAACAAGGCCTTGATGTTAAAGACCTAGTATTACTATCAGGCGCTCACACAATCGGCATAGCCCATTGCTCATCCTTCCGAGACCGGCTGTACAATTTCGCCGGCACGGGTGGCCAAGATCCCTCACTGGACCCAAGATACGCAGCTAATCTCAAAGCCAACAAATGCAAAACACCAACAGACAACAGTAAAGTGGAAATGGACCCTGGAAGCCGCAACACGTTTGATCTAAGCTACTTCTCTCTTCTCCTGAAAAGAAGGGGTCTTTTCGAATCCGATTCTGCTCTCACTAAAGACGCAACTTCATTGGGTCTGGTTCAGAAACTTGTTCGAGGATCCAGGGAAGAATTCATGGCTGAATTTGCTGCATCAATGGAGAAAATGGGTCGGATTAAAGTGAAAACTGGCACCGAAGGTGAAATCCGAAAGCGATGCGCTGTGGTGAATAGTTAA 981 45.67 MGRLTSFVLATLVGLLSLIGSTQAQLQLGFYSKSCPNAEKIVLDFVHQHIHNAPSLAATFIRMHFHDCFVRGCDGSVLINSTSNNQAEKDSPPNETLRGFDFIDRVKSLLEAECPEVVSCADVLSLVTRDSIVATGGPYWEVPTGRRDGVISRSSEALANIPAPFFNFTSLQSSFAEQGLDVKDLVLLSGAHTIGIAHCSSFRDRLYNFAGTGGQDPSLDPRYAANLKANKCKTPTDNSKVEMDPGSRNTFDLSYFSLLLKRRGLFESDSALTKDATSLGLVQKLVRGSREEFMAEFAASMEKMGRIKVKTGTEGEIRKRCAVVNS 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41042886 41044783 + Sed0006037.1 Sed05g3076 715702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3076 326 FunFam Peroxidase 162 304 - -
Sed05g3076 326 FunFam Peroxidase 29 166 - -
Sed05g3076 326 SUPERFAMILY Heme-dependent peroxidases 25 325 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3076 326 PANTHER PEROXIDASE 25-RELATED 21 321 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Sed05g3076 326 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601(InterPro)
Sed05g3076 326 CDD secretory_peroxidase 25 324 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed05g3076 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 184 194 IPR019793 -
Sed05g3076 326 Gene3D Peroxidase, domain 2 162 304 - -
Sed05g3076 326 Pfam Peroxidase 44 285 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3076 326 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3076 326 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3076 326 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3076 326 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3076 326 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3076 326 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3076 326 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3076 326 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3076 326 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3076 326 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3076 326 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3076 326 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3076 326 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3076 326 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3076 326 ProSiteProfiles Plant heme peroxidase family profile. 25 325 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3076 326 Gene3D - 29 325 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0126 Sed-Chr1:1117013 Sed05g3076 Sed-Chr5:41042886 9.20E-148 dispersed
Sed05g3076 Sed-Chr5:41042886 Sed09g0321 Sed-Chr9:2909361 2.50E-76 dispersed
Sed01g0125 Sed-Chr1:1117013 Sed05g3076 Sed-Chr5:41042886 9.20E-148 wgd
Sed04g3293 Sed-Chr4:43300867 Sed05g3076 Sed-Chr5:41042886 2.40E-80 wgd
Sed05g2006 Sed-Chr5:33317271 Sed05g3076 Sed-Chr5:41042886 2.10E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3076 K00430 - csv:101213629 556.984