Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3087 ATGGATTACTCCGCCGGAAACTGGAATTGGCTGTTCGATTACTCCGCATCCAACGATCTCGCCCTCGCCGGCGGCCACTTCTCGCCGCCGCAGCCCGCCAGCTTCACCTGGTCCAACCCCTCCATCAACTTTTCATCTAAAGACAGCCTGGAGGTAGACTGCTCTTATGGAGATCTGGACAGCTTACAGGAAGTGGGTCGCAAACGGCCAAGGGCTGAATCTAGTGCTGTGTCTTCCTCGAAAGCCTGCAGAGAGAAATTGAGAAGAGATAAGCTGAATGAGAGGTTCTTGGAATTGGCTGCTGTCCTGGAACCTGGAAAACCACCCAAAACAGACAAGGTTGCAATCTTAGGTGATGCTATCAGAATGTTGACTGATCTACAAACTGAAACCCAGAAGCTGAAAGAATCTAAGGAGGATTTGAAGGAAAAAATCAAAGAATTAAAGGTTGAGAAAAATGAACTTCGTGATGAGAAGCAAAGGTTGAGAGCAGAGAGAGAAAAGTTGGAGCTGCAAATCAAAGCGGTGAAAACTCGAGCAGCTGACATCCAGCATCCTCCCCCTACAGTTTCAGCTGCATTTACAGCACAAGGGCAAACTGCTGGTAACAAGCTGATGCCTTTCATTGGTTATCCTGGCATTGCCATGTGGCAGTTCTTGCCACCTGCAGCAGTCGACATATCGCAGGATCATGTGCTTCGCCCACCGGTTGCTTAA 717 48.95 MDYSAGNWNWLFDYSASNDLALAGGHFSPPQPASFTWSNPSINFSSKDSLEVDCSYGDLDSLQEVGRKRPRAESSAVSSSKACREKLRRDKLNERFLELAAVLEPGKPPKTDKVAILGDAIRMLTDLQTETQKLKESKEDLKEKIKELKVEKNELRDEKQRLRAEREKLELQIKAVKTRAADIQHPPPTVSAAFTAQGQTAGNKLMPFIGYPGIAMWQFLPPAAVDISQDHVLRPPVA 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41083797 41086800 - Sed0003408.1 Sed05g3087 715713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3087 238 FunFam Transcription factor bHLH34 67 125 - -
Sed05g3087 238 PANTHER BHLH TRANSCRIPTION FACTOR 10 238 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Sed05g3087 238 Coils Coil 124 179 - -
Sed05g3087 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 127 IPR011598 GO:0046983(InterPro)
Sed05g3087 238 Pfam Helix-loop-helix DNA-binding domain 80 128 IPR011598 GO:0046983(InterPro)
Sed05g3087 238 Gene3D - 79 151 IPR036638 GO:0046983(InterPro)
Sed05g3087 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 152 IPR036638 GO:0046983(InterPro)
Sed05g3087 238 CDD bHLH_AtILR3_like 81 156 - -
Sed05g3087 238 SMART finulus 82 133 IPR011598 GO:0046983(InterPro)
Sed05g3087 238 CDD bZIP 142 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3178 Sed-Chr4:42510963 Sed05g3087 Sed-Chr5:41083797 1.90E-46 dispersed
Sed05g3087 Sed-Chr5:41083797 Sed14g1194 Sed-Chr14:21229329 3.20E-09 dispersed
Sed05g3087 Sed-Chr5:41083797 Sed07g2654 Sed-Chr7:41976708 2.40E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38684 PF00010 HLH 3.80E-09 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3087 - - - 0.0