Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3088 ATGTTTCACAGAGAAATGGGATTTCGAAGAGCTGCTTATATTTTTTGTTTTGTGACTCTCCTCTGCGCATTGGCAATTGCAAGTTCAGAGGGCAGGAGGAAAACAATAGGAAAGGTTATCCCCAATGCCGGTAATTGCGATTTCGCATCAACGGAATCGGAAGCAAATATGGACAAGCAGGCATGCACGAAAGAATTGGCAGAGAGGGAATATGGATATGAAGAATTTGTTCCTTGTATCCACAAGGAGAACATGGATGAAGCTATGACAACTCTGCCTCCTGGCATGAAACATGATTTTTTGGATTGTTTAAGAAAAAGTATGTTTCCTCGTGGTTCTGAAGAAAATCCTAGCTTACTCGATTGGTTTAGTAACACAATTGAGTACATTTCTAGAGGGCCTAATATTCACCTGACACATACAATTAGAGCAGCACGAAATTTACTAGCACAACACCCTGCAGCAGCTCCAACTTCATCCCCGGGGAATTCTCCATTATCATCTCGTAGTTCTGATCAAAAGTTGCTTTCACCAAATGCTCCAATGCCATCACCAAGCCATTCCCCAGCAAAGTCTCTGACGCAAAATCTTCATACCCCCGTCGAGTCTCCAACACCATCACCAAATCTCCATCCCCCTGCAGCACTAGCACCATCACCTTCACCAAATCTTCATCCCCCTGTCAAGGCTCCAGCATTGCCAAAGCCACGAGCCCCGTCAATGAACAATACCGACAAATCGCCAACAGCACTGCCAGTGGACGATACCGACACATCACCACGAGCACCGTCAATGAACAATACCGACAAATCGCCAACAGCACCGCCAGTGGACGATTCCAAAAAATCGCCACCAGCACCGCCCGTGGACGATTCCGAAAAATCGCCACCAGCACCGCCTGTGGACGGTTCTGAAAAATCGCCACCAGCACTGCCCGTGGAAGATACCGACACATCGCCACCAGCACCACCAGCACCACCCGTGGACGATACCGACACTTCGCCACCAGCCCTACCTGTGGACAATACTGACATGTCGCCACCAGCACCACCCGTGGATGATACCAACATGAATTCAGATTCACCTCTTGTAGTTAGTTCACCACCTCGTCCACGTGGTTCTTCAAAGAAGAATATTGAAGAAAGCCCGATGGCTATAGTTGCTGGTATTGTAGCAATTGGTATAGGAGTTGTTCTTATTGTTGCCCTACTTTTGTTTTGCCGTCGTGATGAGAAAAGTAAGGTTGATCTGAAGGAAGGGCAAAAGGATGAGAAACCTCTTCTTGTATCTATGAGTGAAATATCAACAGGCTCTTCACAGAAGTCTTACAGCATTGGAAATTCAGCTACCAAAGATGATTTTGGTGCTGATAATGGAAATAAACCACTCTCTTTTGTTACTAACGTATCGGTGAATCCTGAAAACGGGACCTCAGTGGCTGAGGCTCCAACATCTGACGATAAATCTTCAGTAATGCTGCCTCTAAACCTTCCTCCTGGAGGATTAGATTCACAGCCTCCTCCTCCTCCACCTCCAGCACCTGCTCCTAAGGCCCCACCTGCACCCCCCTCGAAGGCTCGTCCCCCACCAGCTCCACCGGGAGCAATCCCCGGTAATTCTAAAGCAGTGCCTGCGGTGCCACAACAGCGTGGACACGATGCGGATTCTGGAAACAATAAAACCAAGTTAAAACCATTCTTCTGGGATAAGGTTCTTGCCAATCCTGATCAATCCATGGTCTGGCACGAGATTAGTGATGGGTCTTTCCAATTCAATGAGGAAATGATGGAGTCTCTATTTGGATATGTAGCAACAGAAACTAACAAAGGTGACCGCAAGAAAGATGGAGAAGCTGGAGTACAGTTCATTAAAATCATCGACCCCAGGAAAGCTCAAAACCTTTCAATTCTCCTACGAGCACTAAATGTGACAACAGCAGAAGTTGTGGATGCCATTGTGGAAGGAAATCCTGATCTTCCAGCAGAACTTATGCAAACCTTGTTGAAGATGGCGCCAACATCAGAAGAAGAACTGAAACTGAGATTATACACAGGTGACCTTTCTCTAATCGGTCCAGCAGAACGATTCCTCAAAATATTGGTGGAGATTCCTTTTGCTTTCAAACGATTAGAATGTCTTCTCTTCATGCTCTCAATGTCCGAAGAAGTCGCGAACATTAAAGAATCATTCGTAACTCTAGAGGTCGCTAGCAACAAAGTTAGAGAGAGCAGACTATTTCTCAAGCTACTAGAAGCAGTTCTCAAAACAGGAAATAGAATGAACGACGGGACGTACCGTGGCGACGCTCAGGCGTTTAAGCTCGACACGCTCTTGAAACTGGCGGATGTGAAAGGAACCGACGGCAAGACTTCGCTCCTACACTTCGTCGTACAGGAGATTATCCGATCGGAAGGCATAAAAGCAGCCCGCTCCAACAGAGAGAGCCGGAGTGCATCCAGCATAGTCTCCTCCGCCGATATGACTTACGACGATTTCGTCGACGATTCGGCGGAACATTACCGGCAATTAGGTCTTCAAGTGGTTTCTGGATTGAGCACTGAGCTCCAGGACGTTAAAAGAGCGGCCGCCATAGAACTGGAGGGCCTATCGAAATCGATATCGAAACTCGGCCAGTCTATGGTGAAAACCAAAGGATTCATAAACGCGGAGATGAAGAATATAGACGAGGACAGCAAATTCCACCAATCGCTATCGAAATTTTTGGAGGAAGCAGAGAAGGATATTTCGTGGATTGCAGTGGAAGAAAAGAGGATAATGGCAGAGGTGAGAAGCGCGGCAGATTACTTCCATGGAAAATCCGGCAAGGAAGAAGGATCGCGATTGTTTACGATCGTACGCGATTTCTTGATTGTGTTGGACAAGACCTGCAAACAGGTGAAAGAAACGGCTGAAGCGGCGGCGAAGCAAGCGAAGAATGCGAAAAAAGAAAATCAGCCACCGTCGGCTACTTGTAAGCAGAGTTCAGATCTACGACGGCGGCTGTTTCCGGCGATTGTAGAGCGGCGGAAGGACGCGGAGTCGAGTTCTTCAGACGATGAGGACGGCGGCGGCGACGGCGATAGTTCATCTTCTTCATCCTAG 3102 47.45 MFHREMGFRRAAYIFCFVTLLCALAIASSEGRRKTIGKVIPNAGNCDFASTESEANMDKQACTKELAEREYGYEEFVPCIHKENMDEAMTTLPPGMKHDFLDCLRKSMFPRGSEENPSLLDWFSNTIEYISRGPNIHLTHTIRAARNLLAQHPAAAPTSSPGNSPLSSRSSDQKLLSPNAPMPSPSHSPAKSLTQNLHTPVESPTPSPNLHPPAALAPSPSPNLHPPVKAPALPKPRAPSMNNTDKSPTALPVDDTDTSPRAPSMNNTDKSPTAPPVDDSKKSPPAPPVDDSEKSPPAPPVDGSEKSPPALPVEDTDTSPPAPPAPPVDDTDTSPPALPVDNTDMSPPAPPVDDTNMNSDSPLVVSSPPRPRGSSKKNIEESPMAIVAGIVAIGIGVVLIVALLLFCRRDEKSKVDLKEGQKDEKPLLVSMSEISTGSSQKSYSIGNSATKDDFGADNGNKPLSFVTNVSVNPENGTSVAEAPTSDDKSSVMLPLNLPPGGLDSQPPPPPPPAPAPKAPPAPPSKARPPPAPPGAIPGNSKAVPAVPQQRGHDADSGNNKTKLKPFFWDKVLANPDQSMVWHEISDGSFQFNEEMMESLFGYVATETNKGDRKKDGEAGVQFIKIIDPRKAQNLSILLRALNVTTAEVVDAIVEGNPDLPAELMQTLLKMAPTSEEELKLRLYTGDLSLIGPAERFLKILVEIPFAFKRLECLLFMLSMSEEVANIKESFVTLEVASNKVRESRLFLKLLEAVLKTGNRMNDGTYRGDAQAFKLDTLLKLADVKGTDGKTSLLHFVVQEIIRSEGIKAARSNRESRSASSIVSSADMTYDDFVDDSAEHYRQLGLQVVSGLSTELQDVKRAAAIELEGLSKSISKLGQSMVKTKGFINAEMKNIDEDSKFHQSLSKFLEEAEKDISWIAVEEKRIMAEVRSAADYFHGKSGKEEGSRLFTIVRDFLIVLDKTCKQVKETAEAAAKQAKNAKKENQPPSATCKQSSDLRRRLFPAIVERRKDAESSSSDDEDGGGDGDSSSSSS 1033
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41093529 41097217 + Sed0026773.1 Sed05g3088 715714

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3088 1033 MobiDBLite consensus disorder prediction 977 1033 - -
Sed05g3088 1033 ProSiteProfiles Formin homology-2 (FH2) domain profile. 553 985 IPR015425 -
Sed05g3088 1033 MobiDBLite consensus disorder prediction 205 234 - -
Sed05g3088 1033 Coils Coil 963 983 - -
Sed05g3088 1033 PANTHER FORMIN-RELATED 345 1020 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Sed05g3088 1033 SMART it6_source 553 974 IPR015425 -
Sed05g3088 1033 MobiDBLite consensus disorder prediction 500 537 - -
Sed05g3088 1033 Gene3D Formin, FH2 domain 561 997 IPR042201 -
Sed05g3088 1033 MobiDBLite consensus disorder prediction 1001 1017 - -
Sed05g3088 1033 MobiDBLite consensus disorder prediction 431 454 - -
Sed05g3088 1033 MobiDBLite consensus disorder prediction 153 204 - -
Sed05g3088 1033 MobiDBLite consensus disorder prediction 981 995 - -
Sed05g3088 1033 Pfam Formin Homology 2 Domain 557 958 IPR015425 -
Sed05g3088 1033 MobiDBLite consensus disorder prediction 461 491 - -
Sed05g3088 1033 MobiDBLite consensus disorder prediction 428 561 - -
Sed05g3088 1033 MobiDBLite consensus disorder prediction 314 333 - -
Sed05g3088 1033 MobiDBLite consensus disorder prediction 240 274 - -
Sed05g3088 1033 MobiDBLite consensus disorder prediction 278 306 - -
Sed05g3088 1033 MobiDBLite consensus disorder prediction 153 377 - -
Sed05g3088 1033 SUPERFAMILY Formin homology 2 domain (FH2 domain) 506 977 - -
Sed05g3088 1033 PRINTS Proline rich extensin signature 215 227 - -
Sed05g3088 1033 PRINTS Proline rich extensin signature 248 264 - -
Sed05g3088 1033 PRINTS Proline rich extensin signature 177 189 - -
Sed05g3088 1033 PRINTS Proline rich extensin signature 271 288 - -
Sed05g3088 1033 PRINTS Proline rich extensin signature 227 248 - -
Sed05g3088 1033 PRINTS Proline rich extensin signature 192 208 - -
Sed05g3088 1033 PRINTS Proline rich extensin signature 303 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3088 K28090 - - csv:101206094 1000.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3088 Sed-Chr5:41093529 Sed07g2651 Sed-Chr7:41953739 3.60E-137 dispersed
Sed05g3088 Sed-Chr5:41093529 Sed04g3176 Sed-Chr4:42484752 2.20E-142 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g4182 . 523 983 FH2 protein (formin) Gene Family AT3G25500 73.7 1.6e-185 647.9
Sed05g0219 . 179 971 FH2 protein (formin) Gene Family AT3G25500 53.1 1.4e-184 644.8
Sed06g0275 . 447 929 FH2 protein (formin) Gene Family AT3G25500 64.8 1.1e-162 572.0
Sed01g0454 . 434 886 FH2 protein (formin) Gene Family AT3G25500 59.3 5.0e-139 493.4
Sed04g0464 . 493 893 FH2 protein (formin) Gene Family AT3G25500 51.1 2.0e-103 375.2
Sed04g0465 . 493 893 FH2 protein (formin) Gene Family AT3G25500 51.1 2.0e-103 375.2
Sed01g4182 . 547 1000 FH2 protein (formin) Gene Family AT2G43800 59.4 3.9e-140 496.9
Sed05g0219 . 534 988 FH2 protein (formin) Gene Family AT2G43800 59.0 2.6e-136 484.2
Sed01g0454 . 464 902 FH2 protein (formin) Gene Family AT2G43800 54.0 9.6e-123 439.1
Sed07g2651 . 444 588 FH2 protein (formin) Gene Family AT4G15200 66.7 5.8e-47 186.4
Sed04g3176 . 457 604 FH2 protein (formin) Gene Family AT4G15200 61.7 1.2e-44 178.7
Sed07g2651 . 205 924 FH2 protein (formin) Gene Family AT5G54650 55.2 3.4e-168 590.1
Sed04g3176 . 462 944 FH2 protein (formin) Gene Family AT5G54650 64.9 1.7e-167 587.8
Sed05g3088 . 560 1011 FH2 protein (formin) Gene Family AT5G54650 61.8 3.2e-150 530.4
Sed01g0454 . 25 905 FH2 protein (formin) Gene Family AT5G67470 55.8 5.0e-220 762.3
Sed01g4182 . 538 1000 FH2 protein (formin) Gene Family AT5G67470 59.3 1.3e-135 481.9
Sed05g0219 . 526 989 FH2 protein (formin) Gene Family AT5G67470 58.5 1.2e-133 475.3
Sed06g0275 . 478 906 FH2 protein (formin) Gene Family AT5G67470 63.3 7.4e-131 466.1
Sed04g0464 . 496 895 FH2 protein (formin) Gene Family AT5G67470 50.4 5.5e-102 370.2
Sed04g0465 . 496 895 FH2 protein (formin) Gene Family AT5G67470 50.4 5.5e-102 370.2
Sed06g1596 . 306 783 FH2 protein (formin) Gene Family AT1G59910 51.6 5.3e-124 443.4
Sed01g4182 . 578 959 FH2 protein (formin) Gene Family AT5G48360 51.6 5.9e-100 363.2
Sed01g0454 . 468 863 FH2 protein (formin) Gene Family AT3G05470 51.2 1.8e-105 381.7
Sed05g0223 . 924 1235 FH2 protein (formin) Gene Family AT1G42980 50.8 3.3e-67 253.1
Sed05g0223 . 1 1242 FH2 protein (formin) Gene Family AT1G31810 67.1 0.0e+00 1206.0
Sed08g0241 . 1344 1665 FH2 protein (formin) Gene Family AT5G07650 73.6 4.4e-127 453.4
Sed01g2329 . 979 1286 FH2 protein (formin) Gene Family AT5G07650 70.1 3.7e-118 423.7
Sed05g1741 . 967 1289 FH2 protein (formin) Gene Family AT5G07650 65.0 6.3e-110 396.4
Sed05g1740 . 1027 1349 FH2 protein (formin) Gene Family AT5G07650 65.0 6.3e-110 396.4
Sed13g1968 . 1050 1371 FH2 protein (formin) Gene Family AT5G07650 63.0 1.6e-108 391.7
Sed05g0223 . 908 1239 FH2 protein (formin) Gene Family AT5G07650 59.6 6.5e-107 386.3
Sed12g2294 . 807 1135 FH2 protein (formin) Gene Family AT5G07650 59.4 8.5e-107 386.0
Sed12g1975 . 1436 1691 FH2 protein (formin) Gene Family AT5G07650 72.7 6.1e-97 353.2
Sed12g1974 . 1436 1691 FH2 protein (formin) Gene Family AT5G07650 72.7 6.1e-97 353.2
Sed12g1976 . 1412 1667 FH2 protein (formin) Gene Family AT5G07650 72.7 6.1e-97 353.2
Sed05g1742 . 1027 1286 FH2 protein (formin) Gene Family AT5G07650 66.2 4.3e-90 330.5
Sed05g1743 . 1027 1175 FH2 protein (formin) Gene Family AT5G07650 67.8 2.1e-49 195.3
Sed08g0241 . 1270 1658 FH2 protein (formin) Gene Family AT5G07770 68.2 1.7e-139 494.2
Sed01g2329 . 903 1286 FH2 protein (formin) Gene Family AT5G07770 63.1 4.7e-126 449.5
Sed05g1741 . 892 1281 FH2 protein (formin) Gene Family AT5G07770 59.1 4.7e-118 422.9
Sed05g1740 . 952 1341 FH2 protein (formin) Gene Family AT5G07770 59.1 4.7e-118 422.9
Sed13g1968 . 975 1364 FH2 protein (formin) Gene Family AT5G07770 56.5 2.2e-115 414.1
Sed12g2294 . 739 1138 FH2 protein (formin) Gene Family AT5G07770 54.7 8.3e-115 412.1
Sed05g0223 . 833 1233 FH2 protein (formin) Gene Family AT5G07770 54.5 1.8e-114 411.0
Sed12g1975 . 1365 1691 FH2 protein (formin) Gene Family AT5G07770 67.4 1.0e-112 405.2
Sed12g1974 . 1365 1691 FH2 protein (formin) Gene Family AT5G07770 67.4 1.0e-112 405.2
Sed12g1976 . 1341 1667 FH2 protein (formin) Gene Family AT5G07770 67.4 1.0e-112 405.2
Sed05g1742 . 952 1287 FH2 protein (formin) Gene Family AT5G07770 58.8 3.4e-100 363.6
Sed05g1743 . 952 1175 FH2 protein (formin) Gene Family AT5G07770 56.4 2.4e-58 224.6
Sed05g1741 . 884 1289 FH2 protein (formin) Gene Family AT3G32400 74.6 4.6e-167 585.5
Sed05g1740 . 944 1349 FH2 protein (formin) Gene Family AT3G32400 74.6 4.6e-167 585.5
Sed13g1968 . 950 1371 FH2 protein (formin) Gene Family AT3G32400 71.1 3.4e-162 569.3
Sed12g2294 . 723 1127 FH2 protein (formin) Gene Family AT3G32400 65.8 4.5e-146 515.8
Sed05g1742 . 944 1286 FH2 protein (formin) Gene Family AT3G32400 74.3 5.7e-141 498.8
Sed05g0223 . 844 1238 FH2 protein (formin) Gene Family AT3G32400 65.7 1.1e-139 494.6
Sed08g0241 . 1259 1665 FH2 protein (formin) Gene Family AT3G32400 63.0 1.4e-139 494.2
Sed01g2329 . 873 1292 FH2 protein (formin) Gene Family AT3G32400 57.9 1.0e-129 461.5
Sed12g1975 . 1365 1691 FH2 protein (formin) Gene Family AT3G32400 61.3 4.5e-106 382.9
Sed12g1974 . 1365 1691 FH2 protein (formin) Gene Family AT3G32400 61.3 4.5e-106 382.9
Sed12g1976 . 1341 1667 FH2 protein (formin) Gene Family AT3G32400 61.3 4.5e-106 382.9
Sed05g1743 . 944 1175 FH2 protein (formin) Gene Family AT3G32400 72.0 1.8e-91 334.3
Sed05g1740 . 1 1349 FH2 protein (formin) Gene Family AT2G25050 50.6 0.0e+00 1135.9
Sed12g2294 . 1 1127 FH2 protein (formin) Gene Family AT2G25050 54.0 8.8e-294 1007.7
Sed08g0241 . 1271 1665 FH2 protein (formin) Gene Family AT5G07780 61.9 1.2e-121 434.5
Sed01g2329 . 903 1292 FH2 protein (formin) Gene Family AT5G07780 57.1 4.4e-111 399.4
Sed05g1741 . 893 1282 FH2 protein (formin) Gene Family AT5G07780 54.8 5.2e-104 375.9
Sed05g1740 . 953 1342 FH2 protein (formin) Gene Family AT5G07780 54.8 5.2e-104 375.9
Sed13g1968 . 977 1371 FH2 protein (formin) Gene Family AT5G07780 53.3 5.7e-103 372.5
Sed05g0223 . 845 1234 FH2 protein (formin) Gene Family AT5G07780 52.5 2.4e-101 367.1
Sed12g2294 . 746 1127 FH2 protein (formin) Gene Family AT5G07780 52.3 1.5e-98 357.8
Sed12g1975 . 1366 1673 FH2 protein (formin) Gene Family AT5G07780 60.9 5.2e-96 349.4
Sed12g1974 . 1366 1673 FH2 protein (formin) Gene Family AT5G07780 60.9 5.2e-96 349.4
Sed12g1976 . 1342 1649 FH2 protein (formin) Gene Family AT5G07780 60.9 5.2e-96 349.4
Sed05g1742 . 953 1283 FH2 protein (formin) Gene Family AT5G07780 54.3 2.8e-89 327.0
Sed08g0241 . 1 1666 FH2 protein (formin) Gene Family AT5G07740 57.3 1.3e-313 1073.9
Sed12g1975 . 1 1691 FH2 protein (formin) Gene Family AT5G07740 54.8 1.9e-273 940.6
Sed12g1974 . 1 1691 FH2 protein (formin) Gene Family AT5G07740 54.8 1.9e-273 940.6
Sed12g1976 . 1 1667 FH2 protein (formin) Gene Family AT5G07740 54.1 5.8e-259 892.5
Sed08g0241 . 1343 1665 FH2 protein (formin) Gene Family AT5G07760 73.8 4.5e-125 446.8
Sed01g2329 . 978 1292 FH2 protein (formin) Gene Family AT5G07760 69.0 6.5e-116 416.4
Sed05g1741 . 951 1295 FH2 protein (formin) Gene Family AT5G07760 64.0 1.8e-110 398.3
Sed05g1740 . 1011 1355 FH2 protein (formin) Gene Family AT5G07760 64.0 1.8e-110 398.3
Sed12g2294 . 815 1135 FH2 protein (formin) Gene Family AT5G07760 62.5 5.0e-108 390.2
Sed13g1968 . 1049 1371 FH2 protein (formin) Gene Family AT5G07760 63.6 1.9e-107 388.3
Sed05g0223 . 918 1239 FH2 protein (formin) Gene Family AT5G07760 60.4 8.8e-105 379.4
Sed12g1975 . 1435 1691 FH2 protein (formin) Gene Family AT5G07760 72.4 5.2e-97 353.6
Sed12g1974 . 1435 1691 FH2 protein (formin) Gene Family AT5G07760 72.4 5.2e-97 353.6
Sed12g1976 . 1411 1667 FH2 protein (formin) Gene Family AT5G07760 72.4 5.2e-97 353.6
Sed05g1742 . 1011 1286 FH2 protein (formin) Gene Family AT5G07760 65.2 1.5e-91 335.5
Sed05g1743 . 1011 1175 FH2 protein (formin) Gene Family AT5G07760 67.3 1.9e-51 202.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001056 4 3 4 4 4 2 4 2 2 2 2 2 4 2 2 3 2 4 4 2 2 2 2 2 3 2 2 3 3 2 81