Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3088 ATGTTTCACAGAGAAATGGGATTTCGAAGAGCTGCTTATATTTTTTGTTTTGTGACTCTCCTCTGCGCATTGGCAATTGCAAGTTCAGAGGGCAGGAGGAAAACAATAGGAAAGGTTATCCCCAATGCCGGTAATTGCGATTTCGCATCAACGGAATCGGAAGCAAATATGGACAAGCAGGCATGCACGAAAGAATTGGCAGAGAGGGAATATGGATATGAAGAATTTGTTCCTTGTATCCACAAGGAGAACATGGATGAAGCTATGACAACTCTGCCTCCTGGCATGAAACATGATTTTTTGGATTGTTTAAGAAAAAGTATGTTTCCTCGTGGTTCTGAAGAAAATCCTAGCTTACTCGATTGGTTTAGTAACACAATTGAGTACATTTCTAGAGGGCCTAATATTCACCTGACACATACAATTAGAGCAGCACGAAATTTACTAGCACAACACCCTGCAGCAGCTCCAACTTCATCCCCGGGGAATTCTCCATTATCATCTCGTAGTTCTGATCAAAAGTTGCTTTCACCAAATGCTCCAATGCCATCACCAAGCCATTCCCCAGCAAAGTCTCTGACGCAAAATCTTCATACCCCCGTCGAGTCTCCAACACCATCACCAAATCTCCATCCCCCTGCAGCACTAGCACCATCACCTTCACCAAATCTTCATCCCCCTGTCAAGGCTCCAGCATTGCCAAAGCCACGAGCCCCGTCAATGAACAATACCGACAAATCGCCAACAGCACTGCCAGTGGACGATACCGACACATCACCACGAGCACCGTCAATGAACAATACCGACAAATCGCCAACAGCACCGCCAGTGGACGATTCCAAAAAATCGCCACCAGCACCGCCCGTGGACGATTCCGAAAAATCGCCACCAGCACCGCCTGTGGACGGTTCTGAAAAATCGCCACCAGCACTGCCCGTGGAAGATACCGACACATCGCCACCAGCACCACCAGCACCACCCGTGGACGATACCGACACTTCGCCACCAGCCCTACCTGTGGACAATACTGACATGTCGCCACCAGCACCACCCGTGGATGATACCAACATGAATTCAGATTCACCTCTTGTAGTTAGTTCACCACCTCGTCCACGTGGTTCTTCAAAGAAGAATATTGAAGAAAGCCCGATGGCTATAGTTGCTGGTATTGTAGCAATTGGTATAGGAGTTGTTCTTATTGTTGCCCTACTTTTGTTTTGCCGTCGTGATGAGAAAAGTAAGGTTGATCTGAAGGAAGGGCAAAAGGATGAGAAACCTCTTCTTGTATCTATGAGTGAAATATCAACAGGCTCTTCACAGAAGTCTTACAGCATTGGAAATTCAGCTACCAAAGATGATTTTGGTGCTGATAATGGAAATAAACCACTCTCTTTTGTTACTAACGTATCGGTGAATCCTGAAAACGGGACCTCAGTGGCTGAGGCTCCAACATCTGACGATAAATCTTCAGTAATGCTGCCTCTAAACCTTCCTCCTGGAGGATTAGATTCACAGCCTCCTCCTCCTCCACCTCCAGCACCTGCTCCTAAGGCCCCACCTGCACCCCCCTCGAAGGCTCGTCCCCCACCAGCTCCACCGGGAGCAATCCCCGGTAATTCTAAAGCAGTGCCTGCGGTGCCACAACAGCGTGGACACGATGCGGATTCTGGAAACAATAAAACCAAGTTAAAACCATTCTTCTGGGATAAGGTTCTTGCCAATCCTGATCAATCCATGGTCTGGCACGAGATTAGTGATGGGTCTTTCCAATTCAATGAGGAAATGATGGAGTCTCTATTTGGATATGTAGCAACAGAAACTAACAAAGGTGACCGCAAGAAAGATGGAGAAGCTGGAGTACAGTTCATTAAAATCATCGACCCCAGGAAAGCTCAAAACCTTTCAATTCTCCTACGAGCACTAAATGTGACAACAGCAGAAGTTGTGGATGCCATTGTGGAAGGAAATCCTGATCTTCCAGCAGAACTTATGCAAACCTTGTTGAAGATGGCGCCAACATCAGAAGAAGAACTGAAACTGAGATTATACACAGGTGACCTTTCTCTAATCGGTCCAGCAGAACGATTCCTCAAAATATTGGTGGAGATTCCTTTTGCTTTCAAACGATTAGAATGTCTTCTCTTCATGCTCTCAATGTCCGAAGAAGTCGCGAACATTAAAGAATCATTCGTAACTCTAGAGGTCGCTAGCAACAAAGTTAGAGAGAGCAGACTATTTCTCAAGCTACTAGAAGCAGTTCTCAAAACAGGAAATAGAATGAACGACGGGACGTACCGTGGCGACGCTCAGGCGTTTAAGCTCGACACGCTCTTGAAACTGGCGGATGTGAAAGGAACCGACGGCAAGACTTCGCTCCTACACTTCGTCGTACAGGAGATTATCCGATCGGAAGGCATAAAAGCAGCCCGCTCCAACAGAGAGAGCCGGAGTGCATCCAGCATAGTCTCCTCCGCCGATATGACTTACGACGATTTCGTCGACGATTCGGCGGAACATTACCGGCAATTAGGTCTTCAAGTGGTTTCTGGATTGAGCACTGAGCTCCAGGACGTTAAAAGAGCGGCCGCCATAGAACTGGAGGGCCTATCGAAATCGATATCGAAACTCGGCCAGTCTATGGTGAAAACCAAAGGATTCATAAACGCGGAGATGAAGAATATAGACGAGGACAGCAAATTCCACCAATCGCTATCGAAATTTTTGGAGGAAGCAGAGAAGGATATTTCGTGGATTGCAGTGGAAGAAAAGAGGATAATGGCAGAGGTGAGAAGCGCGGCAGATTACTTCCATGGAAAATCCGGCAAGGAAGAAGGATCGCGATTGTTTACGATCGTACGCGATTTCTTGATTGTGTTGGACAAGACCTGCAAACAGGTGAAAGAAACGGCTGAAGCGGCGGCGAAGCAAGCGAAGAATGCGAAAAAAGAAAATCAGCCACCGTCGGCTACTTGTAAGCAGAGTTCAGATCTACGACGGCGGCTGTTTCCGGCGATTGTAGAGCGGCGGAAGGACGCGGAGTCGAGTTCTTCAGACGATGAGGACGGCGGCGGCGACGGCGATAGTTCATCTTCTTCATCCTAG 3102 47.45 MFHREMGFRRAAYIFCFVTLLCALAIASSEGRRKTIGKVIPNAGNCDFASTESEANMDKQACTKELAEREYGYEEFVPCIHKENMDEAMTTLPPGMKHDFLDCLRKSMFPRGSEENPSLLDWFSNTIEYISRGPNIHLTHTIRAARNLLAQHPAAAPTSSPGNSPLSSRSSDQKLLSPNAPMPSPSHSPAKSLTQNLHTPVESPTPSPNLHPPAALAPSPSPNLHPPVKAPALPKPRAPSMNNTDKSPTALPVDDTDTSPRAPSMNNTDKSPTAPPVDDSKKSPPAPPVDDSEKSPPAPPVDGSEKSPPALPVEDTDTSPPAPPAPPVDDTDTSPPALPVDNTDMSPPAPPVDDTNMNSDSPLVVSSPPRPRGSSKKNIEESPMAIVAGIVAIGIGVVLIVALLLFCRRDEKSKVDLKEGQKDEKPLLVSMSEISTGSSQKSYSIGNSATKDDFGADNGNKPLSFVTNVSVNPENGTSVAEAPTSDDKSSVMLPLNLPPGGLDSQPPPPPPPAPAPKAPPAPPSKARPPPAPPGAIPGNSKAVPAVPQQRGHDADSGNNKTKLKPFFWDKVLANPDQSMVWHEISDGSFQFNEEMMESLFGYVATETNKGDRKKDGEAGVQFIKIIDPRKAQNLSILLRALNVTTAEVVDAIVEGNPDLPAELMQTLLKMAPTSEEELKLRLYTGDLSLIGPAERFLKILVEIPFAFKRLECLLFMLSMSEEVANIKESFVTLEVASNKVRESRLFLKLLEAVLKTGNRMNDGTYRGDAQAFKLDTLLKLADVKGTDGKTSLLHFVVQEIIRSEGIKAARSNRESRSASSIVSSADMTYDDFVDDSAEHYRQLGLQVVSGLSTELQDVKRAAAIELEGLSKSISKLGQSMVKTKGFINAEMKNIDEDSKFHQSLSKFLEEAEKDISWIAVEEKRIMAEVRSAADYFHGKSGKEEGSRLFTIVRDFLIVLDKTCKQVKETAEAAAKQAKNAKKENQPPSATCKQSSDLRRRLFPAIVERRKDAESSSSDDEDGGGDGDSSSSSS 1033
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41093529 41097217 + Sed0026773.1 Sed05g3088 715714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3088 1033 MobiDBLite consensus disorder prediction 977 1033 - -
Sed05g3088 1033 ProSiteProfiles Formin homology-2 (FH2) domain profile. 553 985 IPR015425 -
Sed05g3088 1033 MobiDBLite consensus disorder prediction 205 234 - -
Sed05g3088 1033 Coils Coil 963 983 - -
Sed05g3088 1033 PANTHER FORMIN-RELATED 345 1020 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Sed05g3088 1033 SMART it6_source 553 974 IPR015425 -
Sed05g3088 1033 MobiDBLite consensus disorder prediction 500 537 - -
Sed05g3088 1033 Gene3D Formin, FH2 domain 561 997 IPR042201 -
Sed05g3088 1033 MobiDBLite consensus disorder prediction 1001 1017 - -
Sed05g3088 1033 MobiDBLite consensus disorder prediction 431 454 - -
Sed05g3088 1033 MobiDBLite consensus disorder prediction 153 204 - -
Sed05g3088 1033 MobiDBLite consensus disorder prediction 981 995 - -
Sed05g3088 1033 Pfam Formin Homology 2 Domain 557 958 IPR015425 -
Sed05g3088 1033 MobiDBLite consensus disorder prediction 461 491 - -
Sed05g3088 1033 MobiDBLite consensus disorder prediction 428 561 - -
Sed05g3088 1033 MobiDBLite consensus disorder prediction 314 333 - -
Sed05g3088 1033 MobiDBLite consensus disorder prediction 240 274 - -
Sed05g3088 1033 MobiDBLite consensus disorder prediction 278 306 - -
Sed05g3088 1033 MobiDBLite consensus disorder prediction 153 377 - -
Sed05g3088 1033 SUPERFAMILY Formin homology 2 domain (FH2 domain) 506 977 - -
Sed05g3088 1033 PRINTS Proline rich extensin signature 215 227 - -
Sed05g3088 1033 PRINTS Proline rich extensin signature 248 264 - -
Sed05g3088 1033 PRINTS Proline rich extensin signature 177 189 - -
Sed05g3088 1033 PRINTS Proline rich extensin signature 271 288 - -
Sed05g3088 1033 PRINTS Proline rich extensin signature 227 248 - -
Sed05g3088 1033 PRINTS Proline rich extensin signature 192 208 - -
Sed05g3088 1033 PRINTS Proline rich extensin signature 303 328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3088 Sed-Chr5:41093529 Sed07g2651 Sed-Chr7:41953739 3.60E-137 dispersed
Sed05g3088 Sed-Chr5:41093529 Sed04g3176 Sed-Chr4:42484752 2.20E-142 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3088 K28090 - csv:101206094 1000.35