Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3097 ATGGGAAACAGAAAAACAGAGAGTAGTTTTTTCATTACTGATTATCATAGTTGGTTCTTCATATTCATTTGGGTTAATTTAGTCTCCGCGCGAGGCAGCAGCATCGTGAATACATTAAGAGACAGCAATGGAGATTCTGTTGTTTCAGACAACGGAAGATTCGAACTCGGGTTTTTCGCTCCGAATGGAAGCTCAAACGCTTCAAGATACGTTGGAATTTGGTACCATGGCTCCAAACCAGAGGTGGTTGTATGGGTTGCTAACAGAGACAAACCACTTGTCGACAAGTATGGAGTTTTCACCATCAAAGACGGCAACCTACATGTACTGAATTCTAAAACCAACAATACTTTATGGTCAACCAACATCAAACTGATTTCCAACCCTATATCAGTGGTGCTCATGGATACTGGGAACTTGGTTCTCCACGGATTAGGCGTCAACGGTACAACAACAACAACAACAACAACTCTGTGGCAAAGCTTCCAAAATCCAACCGACACATTTCTTCCGGGCATGAACATGACAGACCAATTGAAGTTGACTTCTTGGAAGAATGCACAAGACCCTTCTCCAGGGAATTTCACGTTTTTCAAGGATCTGCAAAGCACCTACATCATTGAGAAACTTAGTGAACGATATTGGAAAAACAAGGATACATGGCAAAATTTCTCCATGGAGGCAGAGCAAAGTATTGTTGTTCAAGTAATGGACTTGTTGTCAAGAAACAATCTTTCTAACTTCAACGCCTCGGCTTCTACTATTCGTTTTCAAAATCAAGTGATTGACTACTTCTTTACAAGATTGGTGATGACTTCCACCGGGGAGATACAATTCCTTGCAAGGAATGGATCGAATGGAAAATGGGATGTGATTTGGTCAGAACCTGAAAGCAGTTGTGGTGTATTAACAGCTTGTGGGAGCTTTGCCTCTTGTAGGGATTACACTAATCATACATGCGAGTGTTTGCCTGGGTTTGAGCCCAAGTCAAAGGATATGTGGGATTCTGGCGATTACTCAGGTGGGTGCCAGAGAAGAACAGAAATTTGCATAAAAGAAGTGGTACATGCTCGAGATTTCTTCAAAATGAATATGAAGGTAGGAAAGACGTCTAATATTGTCAAGAGTGATGATAATAAGAATTGCAGGACCAAGTGTCTTGAATCTTGTAAATGTCAGGCCTATTCGGAAATAAGAACAATTAATAGAACCGACACTACGACGGCTTGTGTCATTTGGGACGATGCACTTCAATACATTTGGGAAGATGGAAATGATGGTGGCGATGCCAATGTCCGCTTCAAATATTCTGACATTGAATATACAAACCTGGATTGTGAACTATGTGGAACCAACATCGTCCCTTATCCTCTGAGCACAGGCCCCAACTGCGGTGATCCGAAGTATCGTAACTTCAGATGTAATGATTTAAACCAACTCTCGTTTCAGCCAGGAGATTTTGACTACAATGTCACTGACATCAATGTTCAACTAAACACTTTTACAATTAAAACAAACGGGTCAATTTGCAGAGGTAACGATAGAGATGCAATTCAAAAGCTACTGAAATTGGAACACTCGTCTACATTTAAAGTAAGCAGCAGCGGCTGTGACTCTGAATTTAATGAAATTGATATCCAATGGGAGAAACCATTAGAGCCTATTTGCAAATCACCTAAAGATTGTAGTAATTGGCCAAATTCATCATGCAACTCATCAACAGATGGAACAAACAGGTGTTTGTGCAATCCTTCTTTTAACTGGAATGGCACCTATTGTAGTATTTCTCCAGAGGATGGCTTGAATCAGTTTCATCCAAAGCAGACAAAAACTAAAGTTGGTATCATTGTCCCAGTCACCATTGCTGGATTCATAGTTATTTCCTGCTTGGTGTGGTATATTTACTACAAAATAAGGAAGGTTCATAGCAAAAAAGATCAAATATCAAATCTTGGGGGAAATGAAGGAACCAGTTATTTGTACGAGAGTGAAAAACGAATTAAGGACTTTATGAGTTCCGAAATGTTTGGAGATGATGAAAGAAAAGCCATAGAAGTACCAGTTTTTTATTTGGAAACAATACTCATTGCTACAGACAACTTCTCAGAAGCAAACAAACTTGGACAAGGAGGATTTGGGGCAGTTTACAAGGGACGTTTTCCAGAAGGATTGGAAATTGCAATAAAGAGGTTGTCTCAAGGTTCAACCCAAGGCGTAAATGAGTTTAAGAATGAGGCTATTCTCATTGCAAAACTTCAACATCGAAATCTGGTTCGACTTTTAGGCTACTGTGTTGCAGGAGATGAAAAAATGTTGTGTTTACTGGTGAATTGGGAAATGCGGTTTAATATTATAGTGGGAATTGCTCGAGGGCTAGTTTATCTCCACGAAGATTCAAGATTGAAGATTATTCATAGAGATATGAAAACAAGTAACATACTATTGGATGCAGAAATGAATCCTAAAATTGCTGACTTTGGCTTAGCAAGAATCTTTGATGGCAAGCAAACAGAGGCAATCACCAACAGAGTTGTTGGAACTTACGGGTACATGTCACCGGAATATGCATTAGATGGATCATTTTCAGTCAAATCGGATGTGTTCAGTTTCGGTATAGTCGTGTTAGAGATTGTTAGTGGAAGAAGAAACACTGGCTTCTATAAGTCCAAAGAGGCCCTGAACCTTCTTGGATATGTTTGGAGGTTGTGGAGAGAAAAAAGAGGAATGGAAATAGCAGAGGCCGGCATACGAGAAAGCTGCAATCCAAGTGAAGTTGTTAAATGTGTGGCTGTGGGACTGTTGTGTGTACAAGAAGACCCCAACGATCGTCCGACAATGTCGAATGTGGCGTTTATGCTAAGTTCCGGTAGTGATCCTGCTTCTCTTCCCGATCCTAAACAGCCGGCTTTCGTTGATAAAAACCCAACTCCTTCAACTTCTTCTACAGCTTCGTCTTCGGGCTTTAAGAAAGAAATAGCAGCATATGATTTTAGCTTACTTGAGCCTCGCTGA 3012 40.37 MGNRKTESSFFITDYHSWFFIFIWVNLVSARGSSIVNTLRDSNGDSVVSDNGRFELGFFAPNGSSNASRYVGIWYHGSKPEVVVWVANRDKPLVDKYGVFTIKDGNLHVLNSKTNNTLWSTNIKLISNPISVVLMDTGNLVLHGLGVNGTTTTTTTTLWQSFQNPTDTFLPGMNMTDQLKLTSWKNAQDPSPGNFTFFKDLQSTYIIEKLSERYWKNKDTWQNFSMEAEQSIVVQVMDLLSRNNLSNFNASASTIRFQNQVIDYFFTRLVMTSTGEIQFLARNGSNGKWDVIWSEPESSCGVLTACGSFASCRDYTNHTCECLPGFEPKSKDMWDSGDYSGGCQRRTEICIKEVVHARDFFKMNMKVGKTSNIVKSDDNKNCRTKCLESCKCQAYSEIRTINRTDTTTACVIWDDALQYIWEDGNDGGDANVRFKYSDIEYTNLDCELCGTNIVPYPLSTGPNCGDPKYRNFRCNDLNQLSFQPGDFDYNVTDINVQLNTFTIKTNGSICRGNDRDAIQKLLKLEHSSTFKVSSSGCDSEFNEIDIQWEKPLEPICKSPKDCSNWPNSSCNSSTDGTNRCLCNPSFNWNGTYCSISPEDGLNQFHPKQTKTKVGIIVPVTIAGFIVISCLVWYIYYKIRKVHSKKDQISNLGGNEGTSYLYESEKRIKDFMSSEMFGDDERKAIEVPVFYLETILIATDNFSEANKLGQGGFGAVYKGRFPEGLEIAIKRLSQGSTQGVNEFKNEAILIAKLQHRNLVRLLGYCVAGDEKMLCLLVNWEMRFNIIVGIARGLVYLHEDSRLKIIHRDMKTSNILLDAEMNPKIADFGLARIFDGKQTEAITNRVVGTYGYMSPEYALDGSFSVKSDVFSFGIVVLEIVSGRRNTGFYKSKEALNLLGYVWRLWREKRGMEIAEAGIRESCNPSEVVKCVAVGLLCVQEDPNDRPTMSNVAFMLSSGSDPASLPDPKQPAFVDKNPTPSTSSTASSSGFKKEIAAYDFSLLEPR 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41181144 41184800 - Sed0013860.1 Sed05g3097 715723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3097 1003 ProSitePatterns Protein kinases ATP-binding region signature. 707 729 IPR017441 GO:0005524(InterPro)
Sed05g3097 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g3097 1003 ProSiteProfiles PAN/Apple domain profile. 350 437 IPR003609 -
Sed05g3097 1003 SUPERFAMILY Protein kinase-like (PK-like) 684 953 IPR011009 -
Sed05g3097 1003 Gene3D Transferase(Phosphotransferase) domain 1 772 961 - -
Sed05g3097 1003 Pfam Protein tyrosine and serine/threonine kinase 704 950 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g3097 1003 Pfam PAN-like domain 364 417 IPR003609 -
Sed05g3097 1003 Gene3D Phosphorylase Kinase; domain 1 663 771 - -
Sed05g3097 1003 FunFam Os08g0179000 protein 672 776 - -
Sed05g3097 1003 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 189 IPR036426 -
Sed05g3097 1003 MobiDBLite consensus disorder prediction 956 986 - -
Sed05g3097 1003 SMART blect_4 38 165 IPR001480 -
Sed05g3097 1003 CDD B_lectin 42 165 IPR001480 -
Sed05g3097 1003 MobiDBLite consensus disorder prediction 972 986 - -
Sed05g3097 1003 ProSiteProfiles Protein kinase domain profile. 701 970 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3097 1003 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 38 968 - -
Sed05g3097 1003 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 761 961 - -
Sed05g3097 1003 Pfam S-locus glycoprotein domain 243 330 IPR000858 GO:0048544(InterPro)
Sed05g3097 1003 ProSiteProfiles Bulb-type lectin domain profile. 32 155 IPR001480 -
Sed05g3097 1003 Pfam D-mannose binding lectin 83 180 IPR001480 -
Sed05g3097 1003 SMART serkin_6 701 952 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3097 1003 Gene3D - 28 163 IPR036426 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3315 Sed-Chr4:43407511 Sed05g3097 Sed-Chr5:41181144 1.20E-18 dispersed
Sed05g3097 Sed-Chr5:41181144 Sed05g3100 Sed-Chr5:41200883 0.00E+00 dispersed
Sed05g3097 Sed-Chr5:41181144 Sed05g3098 Sed-Chr5:41191956 0.00E+00 tandem
Sed04g3313 Sed-Chr4:43400275 Sed05g3097 Sed-Chr5:41181144 7.80E-246 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79263 PF00069 Pkinase 4.10E-35 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3097 - - - 0.0