Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3098 ATGGATGATCTGAGTGAGTTCTTCAGGTTTTGTATTTTCTTTATGCTACTATTGGCGCCTGCTACTGCTACAAGAGGCAGAGTCGTGAATACATTAAGGGACAATGATGGGGATTCTGTTGTTTCTGAGGGGGGCAGATTCGAGCTCGGCTTTTTCACTCCTAATGGAATTTCAAGATCAGACAATAGAAGATACGTAGGAATTTGGTACCATGGCTCCAAACCAGAGGTGGCTGTATGGGTTGCCAACAGAGACAACCCACTGCACAACAACAGTGGAGTTTTCGCCATTCAAGACGGCAACCTACAACTACTGGATTCTAAAACCAACAACTCTTTATGGTCAGCCAAGATCGATTCTTCCACTTCCAACAGTAGTAGATCAGTGGTGCTGATGGATACTGGGAACTTGGTGCTCCAGGGATTAGGCGTCGACGCCACAACCACAACAACTCTGTGGCAAAGCTTCCAAGATCCAACCGACACATTTCTTCCGGGCATGAGCATGACCGACCAATTGAAGTTGACTTCTTGGAGGAGTACAGTTGACCCTTCGCAGGGGATTTTCACGTTTCTCAAGGATCTGGAAAGCAGCTACATCATCGAGAAACAAAGTGCACGGTATTGGGTAAGCAAGGAAATATGGCAAACTTTCTCCATGGAGGCAGAGCAAAGTATTGTTGTTCAAGTAATGGACTTGTTGTCAAGAAACAATCTTTCTAACTTCAACGCCTCGGCTTCTACTATTCGTTTTCAAAATCAAGTGATTGACTACTTCTTTACAAGATTGGTAATGAGTTCCAGCGGAGTGATACAATTCCTTGCAAGGAATAGATCGAGTGGAAAATGGGATGTGATTTGGTCAGAACCTGAAAGCAATTGTGGTGTATTAACAGCTTGTGGGAGCTTTGCCACTTGTAGGAATTATACTAAGCATACATGCGAGTGTTTGCCTGGGTTTGAGCCCTCAAAGGATATGTGGGATTCTGGCGATTACTCAGATGGGTGCCAGAGAAAAACAGAAATTTGCATAAAAGAATTGGAACAGGCTCGAGATTTCTTGACAGTGAATATGAAGGTAGGAAAGACGTCTAATATTGTCAAGAGTGATGATAATAAGAATTGCAGGACCAAGTGTCTTGAATCTTGTAAATGTCAGGCCTATTCGGAAATAAGAACAATTAATAGAACCGACACTACGACGGCTTGTGTCATTTGGGACGATGCACTTCAATACATTTGGGAAGATGGAAATGATGGTGGCGATGCCAATGTCCGCTTCAAATATTCTGACATTGAATATACAAGCCTGGATTGTGAACTATGTGGAACCAACATCGTCCCTTATCCTCTGAGCACAGGTCCCAACTGTGGTGATCCGAAGTATCGTAACTTCCTTTGTTTGGAAAGACTCTACTTTCAGACAATAGATTCTTACTACCTTGTCACCAACATTGATCCACAACTAAATACTTTCACCATTAGTACAAATAAGTCTATTTGCAGGACTACTGACACAGCTGCAATTCAAAAGTTACTGCAACTGGAACAGTCTACATTCAAAGTAAAAAGCCGTTGTAACTCTGAATTTTATGAAATTCATATTCAGTGGGAGAAACCATTAGAGCCTATCTGCAGTTCACATATTGATTGTATTTATTGGCCGAATTCATCGTGCAACTCAACAAAAGATGGAACAAATAGGTGCTTGTGCAATCCTTCTTTTAACTGGAATGGCACCTATTGTAGTATTTCTCCAGAGGATGGCTTGAATCAGTTTCATCCAAAGCAGACAAAAACTAAAGTTGGTATCATTGTCCCAGTCACCATTGCTGGATTCATAGTTATTTCCTGCTTGGTGTTTTATACTTATTACAAACTAAGGAAGGTTCAAAGTAAAAAAGATCAAATATCAAGTCTTGGGGGAAATCAAGAAACCAGTTATTTGTATGAGAGTGAAAAACGAATTAAGGACTTTATGGGTTCCGGAATGTTTGGAGAAGATGATAGAAAAGCCATAGAAGTACCAGTTTTTTATTTTGAGACCATACGCATTGCTACAGACAACTTCTCAGAAGCAAACAAACTTGGACGAGGAGGATTTGGAACAGTTTACAAGGGAGTTTTTCCGGGAGGACTCGAAATTGCGATAAAGAGGTTGTCTCAAGGTTCAGCCCAAGGTGTAGATGAGTTTAAGAATGAGGCAATTCTCATTGCAAAACTTCAACATCGAAATCTGGTTAGACTTTTGGGCTACTGTGTTGCAGGAGAAGAAAAAATGTTGGTCTATGAATATATGCCCAACAAAAGTCTAGACTTTTTTATATTTGATCGAATACAATGTTTACTTGTGAACTGGGAGATGCGATTTAATATCATAGTAGGAATTGTTCGAGGGCTAGTTTATCTCCACGAAGATTCAAGGTTGAGGATTATTCATAGAGATATGAAAACAAGTAATATACTATTGGATGGAGAAATGAATCCTAAAATTTCAGACTTTGGTTTAGCGAGAATCTTTGATGGCAAGCAAACAGAGGCAATCACCAACAGAGTAGTTGGAACTTATGGGTACATGTCACCAGAATATGCGTTAGATGGATCATTCTCGGTCAAATCCGATGTGTTCAGTTTCGGTATAGTCGTATTAGAGATTGTTAGTGGAAGAAGGAACACCGGCTTCTACAAGTCCAAAGAGGCCTTGAACCTTCTTGGATATGTATGGAATTTGTGGAAAGAAAAAAGGGCATTGGAAATAGCAGAGGTGGGCATACGAGAAAGCTGCAACCCAAGTGAAGTTGTTAAATGTGTGGTTGTGGGGTTGTTGTGTGTTCAAGAAGACCCTAACGATCGGCCCACAATGTCGAATGTCGCTTTTATGCTAAGCCCTGGCGCTGATCTTGCTTCACTTCCAGATCCTAAACAGTCAGCTTTTCTGGATAAGAATTCAAATCCTTCGACTTCTTCTGCAGCTTCGTCTTCAGGCTTCAAGCAAGAAACAGCAGGCTATGATTTAAGCTTACTTGAGCCTCGCTAA 3036 40.97 MDDLSEFFRFCIFFMLLLAPATATRGRVVNTLRDNDGDSVVSEGGRFELGFFTPNGISRSDNRRYVGIWYHGSKPEVAVWVANRDNPLHNNSGVFAIQDGNLQLLDSKTNNSLWSAKIDSSTSNSSRSVVLMDTGNLVLQGLGVDATTTTTLWQSFQDPTDTFLPGMSMTDQLKLTSWRSTVDPSQGIFTFLKDLESSYIIEKQSARYWVSKEIWQTFSMEAEQSIVVQVMDLLSRNNLSNFNASASTIRFQNQVIDYFFTRLVMSSSGVIQFLARNRSSGKWDVIWSEPESNCGVLTACGSFATCRNYTKHTCECLPGFEPSKDMWDSGDYSDGCQRKTEICIKELEQARDFLTVNMKVGKTSNIVKSDDNKNCRTKCLESCKCQAYSEIRTINRTDTTTACVIWDDALQYIWEDGNDGGDANVRFKYSDIEYTSLDCELCGTNIVPYPLSTGPNCGDPKYRNFLCLERLYFQTIDSYYLVTNIDPQLNTFTISTNKSICRTTDTAAIQKLLQLEQSTFKVKSRCNSEFYEIHIQWEKPLEPICSSHIDCIYWPNSSCNSTKDGTNRCLCNPSFNWNGTYCSISPEDGLNQFHPKQTKTKVGIIVPVTIAGFIVISCLVFYTYYKLRKVQSKKDQISSLGGNQETSYLYESEKRIKDFMGSGMFGEDDRKAIEVPVFYFETIRIATDNFSEANKLGRGGFGTVYKGVFPGGLEIAIKRLSQGSAQGVDEFKNEAILIAKLQHRNLVRLLGYCVAGEEKMLVYEYMPNKSLDFFIFDRIQCLLVNWEMRFNIIVGIVRGLVYLHEDSRLRIIHRDMKTSNILLDGEMNPKISDFGLARIFDGKQTEAITNRVVGTYGYMSPEYALDGSFSVKSDVFSFGIVVLEIVSGRRNTGFYKSKEALNLLGYVWNLWKEKRALEIAEVGIRESCNPSEVVKCVVVGLLCVQEDPNDRPTMSNVAFMLSPGADLASLPDPKQSAFLDKNSNPSTSSAASSSGFKQETAGYDLSLLEPR 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41191956 41195993 - Sed0022542.1 Sed05g3098 715724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3098 1011 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 766 968 - -
Sed05g3098 1011 ProSiteProfiles Bulb-type lectin domain profile. 25 152 IPR001480 -
Sed05g3098 1011 CDD STKc_IRAK 696 963 - -
Sed05g3098 1011 CDD B_lectin 35 159 IPR001480 -
Sed05g3098 1011 ProSiteProfiles Protein kinase domain profile. 690 979 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3098 1011 Gene3D Transferase(Phosphotransferase) domain 1 766 969 - -
Sed05g3098 1011 Pfam PAN-like domain 356 410 IPR003609 -
Sed05g3098 1011 Gene3D Phosphorylase Kinase; domain 1 664 765 - -
Sed05g3098 1011 MobiDBLite consensus disorder prediction 971 1011 - -
Sed05g3098 1011 ProSiteProfiles PAN/Apple domain profile. 343 439 IPR003609 -
Sed05g3098 1011 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 30 975 - -
Sed05g3098 1011 Pfam D-mannose binding lectin 78 174 IPR001480 -
Sed05g3098 1011 MobiDBLite consensus disorder prediction 976 1000 - -
Sed05g3098 1011 Pfam Protein tyrosine and serine/threonine kinase 693 958 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g3098 1011 SMART serkin_6 690 960 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3098 1011 SMART blect_4 31 159 IPR001480 -
Sed05g3098 1011 ProSitePatterns Protein kinases ATP-binding region signature. 696 718 IPR017441 GO:0005524(InterPro)
Sed05g3098 1011 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 655 765 - -
Sed05g3098 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g3098 1011 Pfam S-locus glycoprotein domain 237 323 IPR000858 GO:0048544(InterPro)
Sed05g3098 1011 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 183 IPR036426 -
Sed05g3098 1011 SUPERFAMILY Protein kinase-like (PK-like) 674 963 IPR011009 -
Sed05g3098 1011 Gene3D - 29 157 IPR036426 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3313 Sed-Chr4:43400275 Sed05g3098 Sed-Chr5:41191956 6.00E-254 dispersed
Sed05g3098 Sed-Chr5:41191956 Sed05g3100 Sed-Chr5:41200883 0.00E+00 dispersed
Sed05g3097 Sed-Chr5:41181144 Sed05g3098 Sed-Chr5:41191956 0.00E+00 tandem
Sed05g3098 Sed-Chr5:41191956 Sed05g3099 Sed-Chr5:41191956 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79264 PF00069 Pkinase 7.40E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3098 - - - 0.0