Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3100 ATGGGAATTCACAAAATGGAGAAGGGCAGTGTTTCTGTTTTGTTCACTTTGTGCGTATTTTTTTCGCTGTTATTATTATTAGCTTCTGCTAGAGGAGGCAGAGTCGTGAATACATTAAGGGACAGTGATGGGGATTCTGTTGTTTCTGAGGGGGGCAGATTCGAGCTCGGCTTTTTCACTCCTCAAGGAATTACAAGCTCAGACGTTAGAAGATACGTGGGAATTTGGTACAACGGCACCAAACCGGAGGTGGTTGTATGGGTTGCCAACAGAGACAAACCACTTGTCGACAACTATGGAGTTTTCACCATCAAAGACGGCAACCTACATGTACTGGATTCTAAAACCAACAACTCTTTATGGTCACCCAGCATCGATTCTTCCACTTCCAACAGTAGTAGATCAGTGGTGCTGATGGATACTGGGAACTTGGTGCTCCAGGGATTAGGCGTCGACGCCACAACCACAACCACAACAACTCTGTGGCAAAGCTTCCAAAATCCAACCCACACATTTCTTCCGGGCATGAACATGTCTGACCAATTGAAGTTGACTTCTTGGAAGAGTCCACAAGACCCTTCTCCAGGGAATTTCACGTTTAGAAAGGATCTGCAAAGCACCTACATCATTGAGAAACTTAGTGAACGATATTGGGTTAGCAAGGATCTGTGGCAAAATTTCTACCAGGAAAATGATGAAAATGGTGTTGTTGAAATAATAGATTTGTTGTCAAATAACCATCTTCGTAACTTCAGCAGATCATACTTTAGTTCTCAAAATCAAGGGAATGTCAACTTTTCAAGATTAGTTATGAGTTTCAGCGGGGAGATACAGTTCTTTAAAAGATATAGTTTGAGTGGACAATGGCGTGTCACTTGGTCGGAACCTGAATCCAAATGTAGCATATTAAAAGCTTGTGGGAACTTTGCCAGTTGCCAGAGTAACAGCAGGCACACTTGCAAGTGCTTGCCTGGGTTTGAGCCTAAGTCCATGGATAAGTGGAATTCTGGTGATTACTCAGACGGGTGCCAGAGACAAACAGGAATTTGCCCCTCGCAATTGGCACTGGCTCGAGATTTCTACACGATTAATATGTATGTTGGAAAGGCGTCTAATATTGTCGGGAGCAATGACAATAAGAAATGCAAAACCAAGTGCCTTGAATCTTGTAAATGTCAGGCGTATTCAGAAGTAACAACAATTAATGGAACCGACACTACTACGGCTTGTGTCATTTGGGACGATGAACTTCAATACATTTGGGAAGATAGGAATGGTGGTGGTGATGTCAATGTCCGCTTCAAGTATTCTGACATTGAATATACAAAGGTTGATTGTGAACTATGTGGAAGCAACATCGTCCCTTATCCTTTGAGCACAAGTCCCAACTGTGGTGATCCGAAGTATCGTAACTTCCTTTGTTCGGAAAGACTCTACTTTCAGACAAAAGATTCTTACTACCCTGTCACCAACATTGAACCACATTTAAATACTTTCACCATTAGTACCCTTAGTACCAATAGTACAAACAGGTCTATTTGCAGGACTACTGACACAGCTGCAATTCAAAAGTTACTGCGACTGGAACAGTCTGCATTCAAAGTAAAAGACGGCTGTAACTCTGAATTTAAAGAAATTGATATTCAATGGGAGAAACCATTAGAGCCTATCTGCAATTCACCTGAAGATTGTATTAATTGGCCGAATTCATCGTGCAACTCATCAACAGATGGAATAAACAGGTGCTTGTGCAATCCTTCTCTTAAATGGAATGGCACCTATTGTAGTATTCCTTCAGAGGATGGTTTGAATCAGTTCCATCAAAAGCAAAGAAAAACAATAGTTGGTATCATTGTCCCAGTGACTATTGCTGGATTCATAGTTATTTCCTGCTTGGTGTTGTATATTTATTACAAACTAAGGAAGGTTCAAAGTAAAAAAGATCAAATATCAAGTCTTGGGGGAAATCAAGAAACCAGTTATTTGTATGAGAGTGAAAAACGAATTAAGGACTTTATGGGTTCCGGAATGTTTGGAGAAGATGATAGAAAAGCCATAGAAGTACCAGTTTTTGATTTCGAGACCATACGCATTGCTACAGACAACTTCTCAGAAGCAAACAAACTTGGACGAGGAGGATTTGGAACAGTTTACAAGGGACTTTTTCCAGGAGGATTAGAAATTGCAATAAAGAGGTTGTCTCAAGGTTCTGCCCAAGGCGTCGATGAGTTCAAGAATGAGGCGCTATTGATAGCAAAACTTCAACATCGAAATCTAGTTAGACTTTTGGGCTACTGTGTTTCAGAAGAAGAAAAAATGTTGGTCTATGAATATATGCCCAACAAAAGCCTTGACTTTTTTATATTTGATCGAACGCTATGTTTATTGGTGAATTGGGAGATGCGGTTCAATATCATCGTGGGAATTGTCCGAGGACTGGTTTATCTCCACGAAGATTCAAGGTTGAGGATTATTCATAGAGATATGAAAACAAGCAATGTTTTATTGGATGGAAAAATGAATCCTAAAATTTCGGACTTTGGTTTAGCAAGAATCTTCGATGGCACGCAGACAGAGGCAATCACCACGAAGAGAATTGTTGGAACTTATGGTTATATGTCACCAGAATATGCGTTAGATGGATCATTCTCGGTCAAATCCGATGTGTTCAGTTTCGGTATAGTCGTGCTAGAGATTGTTAGTGGAAGAAGGAACACGGGGTTCTACAAGTCCAAAGAGGCCTTGAATCTTCTTGGATACGTATGGAATTTGTGGAGAGAAAAAAGAGCATTAGAAATAGCAGAGGTGGGCATACGAGAGAGTTGCAATCCAAGTGAAATTGTTAAATGTGTGGCTGTGGGGTTGTTGTGTGTACAAGAAGATCCCAATGACCGTCCCACAATGTCGAATATAGCATTTATGCTGAGCTCTGGTAGTGACCCTGCTTCTCTTCCCGATCCTAAGCGGCCGGCTTTCATTGATAAAAAATCATTTCCTTCTACTTCTTCGACAACTTCTTCTGGTCATAAGCAAGAAATCGTAAGCAATGATTGCAGCTTACTTGAGCCCCGTTAA 3075 40.91 MGIHKMEKGSVSVLFTLCVFFSLLLLLASARGGRVVNTLRDSDGDSVVSEGGRFELGFFTPQGITSSDVRRYVGIWYNGTKPEVVVWVANRDKPLVDNYGVFTIKDGNLHVLDSKTNNSLWSPSIDSSTSNSSRSVVLMDTGNLVLQGLGVDATTTTTTTLWQSFQNPTHTFLPGMNMSDQLKLTSWKSPQDPSPGNFTFRKDLQSTYIIEKLSERYWVSKDLWQNFYQENDENGVVEIIDLLSNNHLRNFSRSYFSSQNQGNVNFSRLVMSFSGEIQFFKRYSLSGQWRVTWSEPESKCSILKACGNFASCQSNSRHTCKCLPGFEPKSMDKWNSGDYSDGCQRQTGICPSQLALARDFYTINMYVGKASNIVGSNDNKKCKTKCLESCKCQAYSEVTTINGTDTTTACVIWDDELQYIWEDRNGGGDVNVRFKYSDIEYTKVDCELCGSNIVPYPLSTSPNCGDPKYRNFLCSERLYFQTKDSYYPVTNIEPHLNTFTISTLSTNSTNRSICRTTDTAAIQKLLRLEQSAFKVKDGCNSEFKEIDIQWEKPLEPICNSPEDCINWPNSSCNSSTDGINRCLCNPSLKWNGTYCSIPSEDGLNQFHQKQRKTIVGIIVPVTIAGFIVISCLVLYIYYKLRKVQSKKDQISSLGGNQETSYLYESEKRIKDFMGSGMFGEDDRKAIEVPVFDFETIRIATDNFSEANKLGRGGFGTVYKGLFPGGLEIAIKRLSQGSAQGVDEFKNEALLIAKLQHRNLVRLLGYCVSEEEKMLVYEYMPNKSLDFFIFDRTLCLLVNWEMRFNIIVGIVRGLVYLHEDSRLRIIHRDMKTSNVLLDGKMNPKISDFGLARIFDGTQTEAITTKRIVGTYGYMSPEYALDGSFSVKSDVFSFGIVVLEIVSGRRNTGFYKSKEALNLLGYVWNLWREKRALEIAEVGIRESCNPSEIVKCVAVGLLCVQEDPNDRPTMSNIAFMLSSGSDPASLPDPKRPAFIDKKSFPSTSSTTSSGHKQEIVSNDCSLLEPR 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41200883 41206094 - Sed0009155.1 Sed05g3100 715726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3100 1024 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 668 778 - -
Sed05g3100 1024 Pfam Protein tyrosine and serine/threonine kinase 706 972 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g3100 1024 ProSiteProfiles PAN/Apple domain profile. 350 437 IPR003609 -
Sed05g3100 1024 SMART serkin_6 703 974 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3100 1024 Pfam PAN-like domain 375 417 IPR003609 -
Sed05g3100 1024 ProSitePatterns Protein kinases ATP-binding region signature. 709 731 IPR017441 GO:0005524(InterPro)
Sed05g3100 1024 CDD B_lectin 42 168 IPR001480 -
Sed05g3100 1024 Gene3D - 37 166 IPR036426 -
Sed05g3100 1024 Pfam S-locus glycoprotein domain 249 330 IPR000858 GO:0048544(InterPro)
Sed05g3100 1024 MobiDBLite consensus disorder prediction 980 1024 - -
Sed05g3100 1024 SUPERFAMILY Protein kinase-like (PK-like) 687 987 IPR011009 -
Sed05g3100 1024 MobiDBLite consensus disorder prediction 996 1014 - -
Sed05g3100 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 824 836 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g3100 1024 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 38 989 - -
Sed05g3100 1024 Gene3D Transferase(Phosphotransferase) domain 1 779 983 - -
Sed05g3100 1024 Gene3D Phosphorylase Kinase; domain 1 677 778 - -
Sed05g3100 1024 SUPERFAMILY alpha-D-mannose-specific plant lectins 85 193 IPR036426 -
Sed05g3100 1024 ProSiteProfiles Bulb-type lectin domain profile. 32 159 IPR001480 -
Sed05g3100 1024 SMART blect_4 38 168 IPR001480 -
Sed05g3100 1024 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 779 983 - -
Sed05g3100 1024 Pfam D-mannose binding lectin 85 183 IPR001480 -
Sed05g3100 1024 CDD STKc_IRAK 709 975 - -
Sed05g3100 1024 ProSiteProfiles Protein kinase domain profile. 703 992 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3097 Sed-Chr5:41181144 Sed05g3100 Sed-Chr5:41200883 0.00E+00 dispersed
Sed05g3098 Sed-Chr5:41191956 Sed05g3100 Sed-Chr5:41200883 0.00E+00 dispersed
Sed05g3100 Sed-Chr5:41200883 Sed05g3102 Sed-Chr5:41214971 0.00E+00 dispersed
Sed05g3099 Sed-Chr5:41191956 Sed05g3100 Sed-Chr5:41200883 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79266 PF07714 PK_Tyr_Ser-Thr 6.20E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3100 - - - 0.0