Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3102 ATGGGAATTCACAAAATGGAGAAGGGCAGTGTTTGTATGTGCGTATTTTTTCCGCTATTATTATCATTAGCGTCTGCTAGAGGAGGGGGCATTGTCGTGAATACGTTAAGGGACAATGATGCAGATTCTGTTGTTTCTGAGGGGCGGCGATTCGAGCTCGGTTTTTTCACTCCTCATGGAATTGCAAGCTCAGACCGTAGAAGATACGTTGGGATATGGTTCTACGGCTCCAAACCCAAGGTGGTGGTATGGGTTGCCAACAGAGACACCCCACTAAACAGCAACAATGGAGTTTTGGCCATCAAAGACGGCAACCTCAAGGTACTGGATTCTAAAACCAACAGCACTTTATGGTCCACCAAAATCCAACCCACTGTCAACGCATCACTGGTGCTGATGGATTCTGGGAATTTGATTCTCAAGGGTTCAGGCTTCAACGCCTCAATAACAACAACTCAGTGGGAAAGCTTCCAAAATCCGACCGACACATTTCTTCCGGGCATGAGCATGAGCATGACCGAACTAAGTTGTTGGAAAAGCGCGGAGGATCCATCGAAGGGGAATTTCAGATTCGTCAAGGACACGGAAGGTCACTACATAATTCATAAGCTCGGTGCACGCTACTGGGTCAGCAAGGAACTTCGCTATAATTTCTCCTCCCAAAGGGAAACGGATGCAGGGATGGAGGATTTTATTGACTTGTTTACAATACTTAATTTCAGTATGGCCATCAACAACCCTACTGTGGAATACGACTATGCAATAGCAGTTATGAATTTCACCGGAAAATTACAGTACAAGGGGAGGAACAAACAGAGTGGACAATGGGATCTAATTTCCTCCAAACCGGATAACAAATGTGATGTGTACGAAGCTTGTGGTTCTTTTGCTACCTGTAGGAGTGATAGTAGACATACTTGTAGGTGCTTGCCTGGATTTGAACCCAAGTCCATGCACGAATGGAACTCTGCTGATTACTCAAGTGGGTGTCTCAGAAAATCAAAAATTTGCTCACAACAATTTCAAACTGAAGAGTTCTTGACAGTAAATATGAAGCCGGGGGTGGCATCTTATATCATTCCAATTCCATCCAGCAATACTGAGGATGAGTGCAAAACTAGGTGCCAACAAAACTGTAAATGTCAGGCCTATTCAGGAATTACAGGAATCGTCTTTAGAAGATCCGAAGTTAATTGTGCCATTTGGGAGGACGAACTTCAAAACATTTGGGAAAATGCAGATGCTGCTGGCCCCATTAACATCCGTATGAAACATTCAGAATTTGAATGGACAAAAATGGACTGTAATGCATGTGGAAGCAACATCGTCCCTTACCCTCTGAGCACAAATTCCGACTGCGGTGATCCGATGTATCATAACTTCAGATGCAATGATTCAAGCCAGCTCTTCTTTCAGCCAGGAGATTTTGACTACATTGTCACCAACATTGATTCACATCTAAAGACTTTTACCATTAAAACAAATGGGTCTATCTGCAGAGGTAATGATAAAGGTGCAATTCAAAAGCTACTGAAGTTGGAACACTCTACATTCAAAGTAAGCAGCGGCTGTGACTTTGAATTTAATGAAATTGATATTCAGTGGGAGAAACCATTAGAACCTATTTGCAAATCACCTAAAGATTGTATTAATTGGCCCAATTCATCGTGCAACTCATCAACAGATGGAACAAAGAGGTGCTTTTGCAAGCCTTCTTTTGAGTGGACTGGCATCAGCTGCCAAACTCCTGTGGATGGTGGGAATCCCTTTCATTTGGAACAGAGAAACATCGGAGTTGGTATCATTGTCTTAGCGAGCATTGCTGGATTTATTGTTATTTCGTGCTTGCTGTTGTACATTTACTATACCAGAAGGAAGTTACAAAGTAAAAAAGATCAAATAGCAACTTTTTGGGAAAATCAAGAAACTACTCGCTTGTATGAGAGTGAAAAACGAATTAAAGACTTTATGGGTTCCGGAACATTTGGAGAAGATGACAGAAAAGCCATAGAAGTACCAGTTTTTGATTTGGATACATTACTCATTGCTACAGACAACTTCTCAGAAGCAAACAAAATTGGAAGAGGAGGATTTGGAACAGTTTACAAGGGACTTTTTCCAGGGGGATTACGAATTGCAATAAAGAGGCTGTCTCAAGGTTCTGCCCAAGGTGTTGATGAGTTTAAGAATGAGGCGATTCTGATCGCAAAACTTCAACATCGAAATCTTGTTAGACTTTTGGGCTATTGTGTTGCAGGAGAAGAAAAAATGTTGGTGTATGAATATATGCCCAACAAAAGCCTTGACTCTTTTATATTTGATCGAACACAATGTTTCCTGGTGAATTGGGAGATGCGGTTTAATATCATCATGGGAATTGCTCGAGGACTAGTTTATCTCCACGAAGATTCAAGATTGAGGATTATTCATAGAGATATGAAAACAAGTAATGTTTTATTGGACACAAGAATGAATCCTAAGATTTCAGACTTTGGTTTAGCTAGAATATTTGACGGCACGCAGACAGAGACAATTACCACGAAAAGAATTGTTGGAACTTACGGGTACATGTCACCCGAATATGCATTGGATGGATCATTCTCGGTGAAATCAGACGTGTTTAGTTTTGGGATAGTTGTGCTGGAGATTGTTAGTGGAAGAAGGAACACTGGCTTCTACAAATCCAAACAGGCCTTGAATCTTCTTGGACACGTATGGAATTTGTGGAGAGAAAAAAGAGCATTGGAAATAGCAGAGGTGGCCATACGAGAAAGGTGTAATCCCAGTGATGTTGTTAAATGTGTGGCTGTGGGATTGTTGTGTGTTCAAGAAGATCCCAATGATCGTCCCACAATGTCAACTGTAGCTTTTATGCTAAGCTCCAGTAGTGACCCCGCTTCTCTTCCTCATCCGAAAAAGCCCGCTTTCATTGATAAAAATTCATCTCCTTCTACTTCTTCTGCATCTTCTTCAGGCTTCAAGCAAGAAATTGTAAGCAATGATTGTAGCTTACTTGAGCCTCGTTAA 3027 41.49 MGIHKMEKGSVCMCVFFPLLLSLASARGGGIVVNTLRDNDADSVVSEGRRFELGFFTPHGIASSDRRRYVGIWFYGSKPKVVVWVANRDTPLNSNNGVLAIKDGNLKVLDSKTNSTLWSTKIQPTVNASLVLMDSGNLILKGSGFNASITTTQWESFQNPTDTFLPGMSMSMTELSCWKSAEDPSKGNFRFVKDTEGHYIIHKLGARYWVSKELRYNFSSQRETDAGMEDFIDLFTILNFSMAINNPTVEYDYAIAVMNFTGKLQYKGRNKQSGQWDLISSKPDNKCDVYEACGSFATCRSDSRHTCRCLPGFEPKSMHEWNSADYSSGCLRKSKICSQQFQTEEFLTVNMKPGVASYIIPIPSSNTEDECKTRCQQNCKCQAYSGITGIVFRRSEVNCAIWEDELQNIWENADAAGPINIRMKHSEFEWTKMDCNACGSNIVPYPLSTNSDCGDPMYHNFRCNDSSQLFFQPGDFDYIVTNIDSHLKTFTIKTNGSICRGNDKGAIQKLLKLEHSTFKVSSGCDFEFNEIDIQWEKPLEPICKSPKDCINWPNSSCNSSTDGTKRCFCKPSFEWTGISCQTPVDGGNPFHLEQRNIGVGIIVLASIAGFIVISCLLLYIYYTRRKLQSKKDQIATFWENQETTRLYESEKRIKDFMGSGTFGEDDRKAIEVPVFDLDTLLIATDNFSEANKIGRGGFGTVYKGLFPGGLRIAIKRLSQGSAQGVDEFKNEAILIAKLQHRNLVRLLGYCVAGEEKMLVYEYMPNKSLDSFIFDRTQCFLVNWEMRFNIIMGIARGLVYLHEDSRLRIIHRDMKTSNVLLDTRMNPKISDFGLARIFDGTQTETITTKRIVGTYGYMSPEYALDGSFSVKSDVFSFGIVVLEIVSGRRNTGFYKSKQALNLLGHVWNLWREKRALEIAEVAIRERCNPSDVVKCVAVGLLCVQEDPNDRPTMSTVAFMLSSSSDPASLPHPKKPAFIDKNSSPSTSSASSSGFKQEIVSNDCSLLEPR 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41214971 41219555 - Sed0020679.1 Sed05g3102 715728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3102 1008 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 35 974 - -
Sed05g3102 1008 Pfam S-locus glycoprotein domain 250 317 IPR000858 GO:0048544(InterPro)
Sed05g3102 1008 ProSitePatterns Protein kinases ATP-binding region signature. 693 715 IPR017441 GO:0005524(InterPro)
Sed05g3102 1008 Pfam PAN-like domain 361 408 IPR003609 -
Sed05g3102 1008 MobiDBLite consensus disorder prediction 978 994 - -
Sed05g3102 1008 Pfam D-mannose binding lectin 82 173 IPR001480 -
Sed05g3102 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g3102 1008 SUPERFAMILY Protein kinase-like (PK-like) 669 959 IPR011009 -
Sed05g3102 1008 SMART serkin_6 687 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3102 1008 Pfam Protein tyrosine and serine/threonine kinase 690 956 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g3102 1008 SMART blect_4 35 160 IPR001480 -
Sed05g3102 1008 ProSiteProfiles Bulb-type lectin domain profile. 29 153 IPR001480 -
Sed05g3102 1008 MobiDBLite consensus disorder prediction 962 994 - -
Sed05g3102 1008 ProSiteProfiles Protein kinase domain profile. 687 973 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3102 1008 Gene3D Transferase(Phosphotransferase) domain 1 763 969 - -
Sed05g3102 1008 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 212 IPR036426 -
Sed05g3102 1008 ProSiteProfiles PAN/Apple domain profile. 337 426 IPR003609 -
Sed05g3102 1008 Gene3D Phosphorylase Kinase; domain 1 658 762 - -
Sed05g3102 1008 Gene3D - 34 157 IPR036426 -
Sed05g3102 1008 FunFam Os08g0179000 protein 658 762 - -
Sed05g3102 1008 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 763 967 - -
Sed05g3102 1008 CDD STKc_IRAK 693 959 - -
Sed05g3102 1008 CDD B_lectin 33 160 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3099 Sed-Chr5:41191956 Sed05g3102 Sed-Chr5:41214971 5.20E-274 dispersed
Sed05g3100 Sed-Chr5:41200883 Sed05g3102 Sed-Chr5:41214971 0.00E+00 dispersed
Sed05g3102 Sed-Chr5:41214971 Sed10g0345 Sed-Chr10:2118971 5.50E-143 dispersed
Sed05g3102 Sed-Chr5:41214971 Sed05g3103 Sed-Chr5:41214971 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79267 PF07714 PK_Tyr_Ser-Thr 4.70E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3102 - - - 0.0