Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3103 ATGGGAATTCACAAAATGGAGAAGGGCAGTGTTTGTATGTGCGTATTTTTTCCGCTATTATTATCATTAGCGTCTGCTAGAGGAGGGGGCATTGTCGTGAATACGTTAAGGGACAATGATGCAGATTCTGTTGTTTCTGAGGGGCGGCGATTCGAGCTCGGTTTTTTCACTCCTCATGGAATTGCAAGCTCAGACCGTAGAAGATACGTTGGGATATGGTTCTACGGCTCCAAACCCAAGGTGGTGGTATGGGTTGCCAACAGAGACACCCCACTAAACAGCAACAATGGAGTTTTGGCCATCAAAGACGGCAACCTCAAGGTACTGGATTCTAAAACCAACAGCACTTTATGGTCCACCAAAATCCAACCCACTGTCAACGCATCACTGGTGCTGATGGATTCTGGGAATTTGATTCTCAAGGGTTCAGGCTTCAACGCCTCAATAACAACAACTCAGTGGGAAAGCTTCCAAAATCCGACCGACACATTTCTTCCGGGCATGAGCATGAGCATGACCGAACTAAGTTGTTGGAAAAGCGCGGAGGATCCATCGAAGGGGAATTTCAGATTCGTCAAGGACACGGAAGGTCACTACATAATTCATAAGCTCGGTGCACGCTACTGGGTCAGCAAGGAACTTCGCTATAATTTCTCCTCCCAAAGGGAAACGGATGCAGGGATGGAGGATTTTATTGACTTGTTTACAATACTTAATTTCAGTATGGCCATCAACAACCCTACTGTGGAATACGACTATGCAATAGCAGTTATGAATTTCACCGGAAAATTACAGTACAAGGGGAGGAACAAACAGAGTGGACAATGGGATCTAATTTCCTCCAAACCGGATAACAAATGTGATGTGTACGAAGCTTGTGGTTCTTTTGCTACCTGTAGGAGTGATAGTAGACATACTTGTAGGTGCTTGCCTGGATTTGAACCCAAGTCCATGCACGAATGGAACTCTGCTGATTACTCAAGTGGGTGTCTCAGAAAATCAAAAATTTGCTCACAACAATTTCAAACTGAAGAGTTCTTGACAGTAAATATGAAGCCGGGGGTGGCATCTTATATCATTCCAATTCCATCCAGCAATACTGAGGATGAGTGCAAAACTAGGTGCCAACAAAACTGTAAATGTCAGGCCTATTCAGGAATTACAGGAATCGTCTTTAGAAGATCCGAAGTTAATTGTGCCATTTGGGAGGACGAACTTCAAAACATTTGGGAAAATGCAGATGCTGCTGGCCCCATTAACATCCGTATGAAACATTCAGAATTTGAATGGACAAAAATGGACTGTAATGCATGTGGAAGCAACATCGTCCCTTACCCTCTGAGCACAAATTCCGACTGCGGTGATCCGATGTATCATAACTTCAGATGCAATGATTCAAGCCAGCTCTTCTTTCAGCCAGGAGATTTTGACTACATTGTCACCAACATTGATTCACATCTAAAGACTTTTACCATTAAAACAAATGGGTCTATCTGCAGAGGTAATGATAAAGGTGCAATTCAAAAGCTACTGAAGTTGGAACACTCTACATTCAAAGTAAGCAGCGGCTGTGACTTTGAATTTAATGAAATTGATATTCAGTGGGAGAAACCATTAGAACCTATTTGCAAATCACCTAAAGATTGTATTAATTGGCCCAATTCATCGTGCAACTCATCAACAGATGGAACAAAGAGGTGCTTTTGCAAGCCTTCTTTTGAGTGGACTGGCATCAGCTGCCAAACTCCTGTGGATGGTGGGAATCCCTTTCATTTGGAACAGAGAAACATCGGAGTTGGTATCATTGTCTTAGCGAGCATTGCTGGATTTATTGTTATTTCGTGCTTGCTGTTGTACATTTACTATACCAGAAGGAAGTTACAAAGTAAAAAAGATCAAATAGCAACTTTTTGGGAAAATCAAGAAACTACTCGCTTGTATGAGAGTGAAAAACGAATTAAAGACTTTATGGGTTCCGGAACATTTGGAGAAGATGACAGAAAAGCCATAGAAGTACCAGTTTTTGATTTGGATACATTACTCATTGCTACAGACAACTTCTCAGAAGCAAACAAAATTGGAAGAGGAGGATTTGGAACAGTTTACAAGGGACTTTTTCCAGGGGGATTACGAATTGCAATAAAGAGGCTGTCTCAAGGTTCTGCCCAAGGTGTTGATGAGTTTAAGAATGAGGCGATTCTGATCGCAAAACTTCAACATCGAAATCTTGTTAGACTTTTGGGCTATTGTGTTGCAGGAGAAGAAAAAATGTTGGTGTATGAATATATGCCCAACAAAAGCCTTGACTCTTTTATATTTGATCGAACACAATGTTTCCTGGTGAATTGGGAGATGCGGTTTAATATCATCATGGGAATTGCTCGAGGACTAGTTTATCTCCACGAAGATTCAAGATTGAGGATTATTCATAGAGATATGAAAACAAGTAATGTTTTATTGGACACAAGAATGAATCCTAAGATTTCAGACTTTGGTTTAGCTAGAATATTTGACGGCACGCAGACAGAGACAATTACCACGAAAAGAATTGTTGGAACTTAG 2562 41.3 MGIHKMEKGSVCMCVFFPLLLSLASARGGGIVVNTLRDNDADSVVSEGRRFELGFFTPHGIASSDRRRYVGIWFYGSKPKVVVWVANRDTPLNSNNGVLAIKDGNLKVLDSKTNSTLWSTKIQPTVNASLVLMDSGNLILKGSGFNASITTTQWESFQNPTDTFLPGMSMSMTELSCWKSAEDPSKGNFRFVKDTEGHYIIHKLGARYWVSKELRYNFSSQRETDAGMEDFIDLFTILNFSMAINNPTVEYDYAIAVMNFTGKLQYKGRNKQSGQWDLISSKPDNKCDVYEACGSFATCRSDSRHTCRCLPGFEPKSMHEWNSADYSSGCLRKSKICSQQFQTEEFLTVNMKPGVASYIIPIPSSNTEDECKTRCQQNCKCQAYSGITGIVFRRSEVNCAIWEDELQNIWENADAAGPINIRMKHSEFEWTKMDCNACGSNIVPYPLSTNSDCGDPMYHNFRCNDSSQLFFQPGDFDYIVTNIDSHLKTFTIKTNGSICRGNDKGAIQKLLKLEHSTFKVSSGCDFEFNEIDIQWEKPLEPICKSPKDCINWPNSSCNSSTDGTKRCFCKPSFEWTGISCQTPVDGGNPFHLEQRNIGVGIIVLASIAGFIVISCLLLYIYYTRRKLQSKKDQIATFWENQETTRLYESEKRIKDFMGSGTFGEDDRKAIEVPVFDLDTLLIATDNFSEANKIGRGGFGTVYKGLFPGGLRIAIKRLSQGSAQGVDEFKNEAILIAKLQHRNLVRLLGYCVAGEEKMLVYEYMPNKSLDSFIFDRTQCFLVNWEMRFNIIMGIARGLVYLHEDSRLRIIHRDMKTSNVLLDTRMNPKISDFGLARIFDGTQTETITTKRIVGT 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41214971 41219555 - Sed0020679.2 Sed05g3103 715729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3103 853 SUPERFAMILY Protein kinase-like (PK-like) 669 853 IPR011009 -
Sed05g3103 853 ProSitePatterns Protein kinases ATP-binding region signature. 693 715 IPR017441 GO:0005524(InterPro)
Sed05g3103 853 Gene3D - 34 157 IPR036426 -
Sed05g3103 853 SMART serkin_6 687 851 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3103 853 Pfam PAN-like domain 361 408 IPR003609 -
Sed05g3103 853 Pfam Protein tyrosine and serine/threonine kinase 690 843 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g3103 853 Gene3D Transferase(Phosphotransferase) domain 1 763 853 - -
Sed05g3103 853 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 763 853 - -
Sed05g3103 853 PIRSF SRK 4 444 IPR024171 GO:0004674(InterPro)
Sed05g3103 853 PIRSF SRK 534 853 IPR024171 GO:0004674(InterPro)
Sed05g3103 853 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g3103 853 SMART blect_4 35 160 IPR001480 -
Sed05g3103 853 ProSiteProfiles Bulb-type lectin domain profile. 29 153 IPR001480 -
Sed05g3103 853 Pfam D-mannose binding lectin 82 173 IPR001480 -
Sed05g3103 853 FunFam Os08g0179000 protein 658 762 - -
Sed05g3103 853 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 212 IPR036426 -
Sed05g3103 853 ProSiteProfiles PAN/Apple domain profile. 337 426 IPR003609 -
Sed05g3103 853 ProSiteProfiles Protein kinase domain profile. 687 853 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3103 853 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 35 853 - -
Sed05g3103 853 Gene3D Phosphorylase Kinase; domain 1 657 762 - -
Sed05g3103 853 Pfam S-locus glycoprotein domain 250 317 IPR000858 GO:0048544(InterPro)
Sed05g3103 853 CDD B_lectin 33 160 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3103 Sed-Chr5:41214971 Sed10g0345 Sed-Chr10:2118971 9.50E-104 dispersed
Sed05g3102 Sed-Chr5:41214971 Sed05g3103 Sed-Chr5:41214971 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79268 PF00069 Pkinase 1.30E-31 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3103 - - - 0.0