Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3108 ATGCCGGAACCAAAGCCGTGGGTCTTGAGGCTTCTTGCGGTTTCTTGTGTCTCTCTAGCTGCCAAAATGAACCAAACAGAACTTAGTCTCTTTGATTTTCAGGGGAATGAGGGATTTATGTTTGATCCCCAAACAGTCCACAGAATGGAAGCTCTGATCTTGGGAGCTCTAAAATGGAGAATGCGCTCCATTACTCCTTTCTCTTTCATCCCTTTTTTCATCTCCCTCTTCAAACTCAGAGACCCACCATTTTTACAAGCCCTCAAAGCCAGAGCTACAGAGATCATCTTCACAGCTCAAAATGGGATTAAGGTCTTGGAATTCAAGCCATCAGTCATAGCAGCATCAGCTCTGCTTTCGGCCTCCCACGAGCTGTTCCCAATTCAATATCCTTGCTTCAGAAAAGCAATCCTCAACTGTTCATACGTAAATAAGGGGGAAGAGGAAGGATTGGGGAAATGCTACAATGCAGTGGAGGAGATAATAAAAAATGGGTTCGGAAGAGAATTGGAAATGGAAGAAAGGTCGTCCGGCACGGCGGCGAATGTGCTCGACCACCATTTCTCGAGCTCCGAAAGTGAAAACACGTTCATGGGAAACAAGAGAAAAGCTGGTGTTGAGTACTGCAAGAACCAGACGCTCCAGCAATGTTGA 654 45.87 MPEPKPWVLRLLAVSCVSLAAKMNQTELSLFDFQGNEGFMFDPQTVHRMEALILGALKWRMRSITPFSFIPFFISLFKLRDPPFLQALKARATEIIFTAQNGIKVLEFKPSVIAASALLSASHELFPIQYPCFRKAILNCSYVNKGEEEGLGKCYNAVEEIIKNGFGRELEMEERSSGTAANVLDHHFSSSESENTFMGNKRKAGVEYCKNQTLQQC 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41264057 41265845 - Sed0007932.2 Sed05g3108 715734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3108 217 SUPERFAMILY Cyclin-like 45 158 IPR036915 -
Sed05g3108 217 Gene3D - 63 126 - -
Sed05g3108 217 Gene3D - 5 62 - -
Sed05g3108 217 PANTHER CYCLINS 9 155 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed05g3108 217 SMART Cyclin_C_2 64 195 IPR004367 -
Sed05g3108 217 FunFam D6-type cyclin 56 156 - -
Sed05g3108 217 Pfam Cyclin, N-terminal domain 9 62 IPR006671 -
Sed05g3108 217 CDD CYCLIN_AtCycD-like_rpt2 64 158 - -
Sed05g3108 217 Pfam Cyclin, C-terminal domain 65 164 IPR004367 -
Sed05g3108 217 SUPERFAMILY Cyclin-like 5 61 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3108 Sed-Chr5:41264057 Sed10g0826 Sed-Chr10:6040568 3.20E-24 dispersed
Sed05g3107 Sed-Chr5:41264057 Sed05g3108 Sed-Chr5:41264057 7.10E-123 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3108 K18812 - csv:101212222 299.286