Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3116 ATGGGATGGAATTCCTTCTACAACAGAGCCTCCAAGACTTTTCATGATCATCCTTCCATCTCCAAGCTTCTCATCCTCTTCACTGTCAGTGGAGGAGGGCTGGTGGCTGCTACTAATGGAAAATCAATGTATCAATCTGCATTTGCTGATGCAGCCCCAAAAGATGGTGACTTCAAGAAGAAGAAGGTGGTGGTGCTTGGAACAGGATGGGCTGGCACCAGCTTTTTGAAGAACCTCAAGAGCGCATCTTATGATGTTCATGTTATTTCTCCTCATAATTACTTTGCTTTCACCCCTTTGCTTCCTAGTGTTACGTGTGGCACCGTCGAGGCCCGGAGCATTGTCGAACCAATTCGTAGTATCACGAAGAAGAAAGGCTTGAATATTGAATTTAGGGAAGCTGAGTGTTATAAGATAGATGCAGAGAATAAGAAAGTATTCTGTCGATCAAATCAAGACACAAATTTGGGTGGCAGGGAAGAATTTTCTGTAGACTATGACTATCTGATAATAGCCATGGGAGCTAAATCCAACACTTTCAACACACCTGGAGTGGAAGAAAATGCTCACTTCTTGAAGGGAGTGGAGGATGCTCAAAGGATTCGGCAGACCGTTATCGATTGTTTCGAGCGTGCCAGCCTTCCAAATTTAAGTGAAGAAGAGAAGAAGAGAACTCTTCACTTTGTAATAGTTGGAGGGGGTCCAACTGGGGTGGAATTTGCAGCAGAGCTTCATGACTTTGCTGTTGAGGATTTAGCAGGGTTGTATCCTTCATTGAAAGAATATGCAAAAATAACCCTCCTAGAGGCAGGAGATCATATTTTGAACATGTTTGATAAGAGGATTACTGCCTTTGCTGAAGAAAAATTTCAAAGAGATGGGATTGACTTGAAAACAGGTTCCATGGTTGTGAAAGTCACTGACAAGGAAATCTCAACAAAAGAAAGAGCATCCGGTGAATTTGTGTCTCTTCCTTATGGAATGGTCGTCTGGTCCACCGGTATCGGTCCTCGGCCTCAAATCGTCGATTTCATGAAGCAAATTGGTCAGACTAACAGAAGAGCTTTGGCTACTGATGAGTGGCTAAGGGTTGAAGGATGTGATGGTGTATATGCACTTGGTGATTGTGCAACAATAAATCAAAGAAGAGTCATGGAAGATATTGCAGTGATATTTAGCAAGGCAGACAAGAACAAGTCAGGAACTTTAGTCCTGAAAGAGTTTCAAGGGGTGGTAGATGATATATGTGAGAGGTACCCTCAAGTAGAGATCTATCTGAAGAAGAAGCAGATGAAGAACTTTGCAGCTTTGTTGAAGTCACAATCTGACGCACAGAAACAATCGACCGAGCTCAATATCGAGAGCTTTACATCCTTACTTTCTGAAGTCGATTCGCAGATGAAAAATCTGCCTGCTACAGCTCAAGTTGCTGCTCAACAAGGTGAATATCTTGCAAGCTGCTTCAACAGGATGGATCAATGTGAAAAGTACCCTGAAGGCCCTCTCCGATTTAGAGGAACCGGACGACATCGGTTTCATCCCTTTAGGTATAAGCATCTTGGGCAGTTTGCTCCTCTTGGGGGAGAACAAACTGCAGCTCAACTACCTGGAGATTGGATCTCAATTGGTCACAGCACCCAGTGGCTTTGGTACTCAGTATATGCAAGCAAGCTAGTAAGCTGGCGCACAAGGGTTCTGGTCATGTCAGATTGGGGTAGAAGATTCATATTTGGCAGGGATTCAAGCAGAATCTAA 1755 43.65 MGWNSFYNRASKTFHDHPSISKLLILFTVSGGGLVAATNGKSMYQSAFADAAPKDGDFKKKKVVVLGTGWAGTSFLKNLKSASYDVHVISPHNYFAFTPLLPSVTCGTVEARSIVEPIRSITKKKGLNIEFREAECYKIDAENKKVFCRSNQDTNLGGREEFSVDYDYLIIAMGAKSNTFNTPGVEENAHFLKGVEDAQRIRQTVIDCFERASLPNLSEEEKKRTLHFVIVGGGPTGVEFAAELHDFAVEDLAGLYPSLKEYAKITLLEAGDHILNMFDKRITAFAEEKFQRDGIDLKTGSMVVKVTDKEISTKERASGEFVSLPYGMVVWSTGIGPRPQIVDFMKQIGQTNRRALATDEWLRVEGCDGVYALGDCATINQRRVMEDIAVIFSKADKNKSGTLVLKEFQGVVDDICERYPQVEIYLKKKQMKNFAALLKSQSDAQKQSTELNIESFTSLLSEVDSQMKNLPATAQVAAQQGEYLASCFNRMDQCEKYPEGPLRFRGTGRHRFHPFRYKHLGQFAPLGGEQTAAQLPGDWISIGHSTQWLWYSVYASKLVSWRTRVLVMSDWGRRFIFGRDSSRI 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41306384 41309545 - Sed0015772.1 Sed05g3116 715742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3116 584 Pfam Pyridine nucleotide-disulphide oxidoreductase 61 382 IPR023753 GO:0016491(InterPro)
Sed05g3116 584 ProSiteProfiles EF-hand calcium-binding domain profile. 383 418 IPR002048 GO:0005509(InterPro)
Sed05g3116 584 SUPERFAMILY FAD/NAD(P)-binding domain 221 380 IPR036188 -
Sed05g3116 584 Pfam NDH2 C-terminal domain 519 580 IPR054585 -
Sed05g3116 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 166 184 - -
Sed05g3116 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 63 82 - -
Sed05g3116 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 355 377 - -
Sed05g3116 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 227 245 - -
Sed05g3116 584 SUPERFAMILY FAD/NAD(P)-binding domain 60 279 IPR036188 -
Sed05g3116 584 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 429 583 - -
Sed05g3116 584 PRINTS Pyridine nucleotide disulphide reductase class-II signature 62 84 - -
Sed05g3116 584 PRINTS Pyridine nucleotide disulphide reductase class-II signature 365 383 - -
Sed05g3116 584 PRINTS Pyridine nucleotide disulphide reductase class-II signature 223 247 - -
Sed05g3116 584 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 51 412 - -
Sed05g3116 584 PANTHER NADH DEHYDROGENASE 47 584 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Sed05g3116 584 Gene3D - 458 569 - -
Sed05g3116 584 Gene3D - 54 435 - -
Sed05g3116 584 SUPERFAMILY EF-hand 348 470 IPR011992 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2055 Sed-Chr1:15395884 Sed05g3116 Sed-Chr5:41306384 2.20E-261 dispersed
Sed05g3116 Sed-Chr5:41306384 Sed08g2309 Sed-Chr8:36489020 6.70E-258 dispersed
Sed05g1975 Sed-Chr5:33046015 Sed05g3116 Sed-Chr5:41306384 3.90E-226 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3116 K03885 - csv:101209855 1071.23