Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3131 ATGGGGACCTGTTTATCTACTGGCAATCAGAGTAGTTGCAATGGTGGAACCAATGGTGAAGGAGTTTCTGGATCCTGTTCGGGGATTAGAGTTCGTGCCAGGATTGAACGAAAGAGAACATTCTCAGATCATTTTTTTTCTATGCAGCATTTGAATTCTATATCTAATAGACTTGTTTATAATGGGAAGACTCGAAATTCTTGCATTTTCACTCAGCAAGGTCGCAAGGGTATCAACCAGGATGCCATGGTTGTATGGGAAGACTTCATATCAGATGGTGTAATTTTCTGTGGGGTGTTTGATGGTCATGGCCCACACGGTCATGTTGTTGCACGAAAGGTTCGAGATACTCTGCCTAGAAAGCTAGTGTCATTTTGGCAGTCATCTCAGTTGAAGCATAATAGATCAGATAGTTTTTCGTGCATCCGATGGAGTCAGAATAATTCAGTAGATGGTGAAGGACTGGACATGGATGGTTCACAGGAGGATAAATCAAGTTCTTTATGGAGAAGAGCTTTCCTCAAATCATATAAAGCCATGGACAAGGAGCTCAAATCTCATCCCAAATTGGACTGTTTCTGTAGTGGAAGCACTGCGGTCACTCTAGTGAAGCAGGGCTCGGATCTATTCGTGGGAAGTATTGGTGATTCTCGAGCAATTCTTGGATCTAAAGACAGCAGTGATTCCCTTGTAGCAACCCAATTGACAGTGGATCTAAAGCCTGATTTGCCCAGAGAAGCTGAAAGAATAAAAAAGTGTAAAGGAAGGGTGTTTGCATTGCAAGATGAGCCAGAAGTGCACAGAGTTTGGCTGCCATTTGACAATGCACCTGGATTAGCCATGGCTCGAGCATTCGGCGACTTCTGTCTGAAGGACTATGGAGTTATCTCTATTCCCGAATTCTCACACTGCATGCTTACAGATAATGATCTGTTTGTTGTCCTTGCATCAGATGGGGTTTGGGATGTATTGAGCAATGAACAGGTGGTTGAGATAGTGTATTCTGCCTCAACTCGATCATCAGCTGCCCGAATGGTGGTAGACTCGGCTGCTCACGAATGGAAGCTCAAGTATCCCACTTCAAAAATGGATGACTGTGCCGTCGTGTGCTTATTTTTGGACAGGAAAATGGATTCGGAATCAGAAAATGAAGAACAAACTCCTTCTGCTACTCTGCAGACCAATCAAATGGGTAGCACTGCAGATTCAGATGAAGACCAGAGGTCCGAGCCAAGTTTGCAAAGGACTTGTACGGTCCGATCATCGGAAGAAAACGACCAAGTTGGAAGATTATCTTCACATGGTGAAGAGAATATAGAATCAATGTCTATTGAAGATGAGAATTGGTTGGGGCTGGAGGGTGTAACAAGAGTAAACTCTCTTGTTCAGCTCCCTAGATTTTCTTGA 1407 43.64 MGTCLSTGNQSSCNGGTNGEGVSGSCSGIRVRARIERKRTFSDHFFSMQHLNSISNRLVYNGKTRNSCIFTQQGRKGINQDAMVVWEDFISDGVIFCGVFDGHGPHGHVVARKVRDTLPRKLVSFWQSSQLKHNRSDSFSCIRWSQNNSVDGEGLDMDGSQEDKSSSLWRRAFLKSYKAMDKELKSHPKLDCFCSGSTAVTLVKQGSDLFVGSIGDSRAILGSKDSSDSLVATQLTVDLKPDLPREAERIKKCKGRVFALQDEPEVHRVWLPFDNAPGLAMARAFGDFCLKDYGVISIPEFSHCMLTDNDLFVVLASDGVWDVLSNEQVVEIVYSASTRSSAARMVVDSAAHEWKLKYPTSKMDDCAVVCLFLDRKMDSESENEEQTPSATLQTNQMGSTADSDEDQRSEPSLQRTCTVRSSEENDQVGRLSSHGEENIESMSIEDENWLGLEGVTRVNSLVQLPRFS 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41400091 41403907 - Sed0003383.1 Sed05g3131 715757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3131 468 MobiDBLite consensus disorder prediction 379 442 - -
Sed05g3131 468 ProSiteProfiles PPM-type phosphatase domain profile. 66 373 IPR001932 -
Sed05g3131 468 MobiDBLite consensus disorder prediction 384 402 - -
Sed05g3131 468 CDD PP2Cc 72 373 IPR001932 -
Sed05g3131 468 FunFam probable protein phosphatase 2C 52 57 376 - -
Sed05g3131 468 Pfam Protein phosphatase 2C 114 350 IPR001932 -
Sed05g3131 468 SUPERFAMILY PP2C-like 62 374 IPR036457 -
Sed05g3131 468 SMART PP2C_4 55 371 IPR001932 -
Sed05g3131 468 PANTHER PROTEIN PHOSPHATASE 67 372 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed05g3131 468 MobiDBLite consensus disorder prediction 412 426 - -
Sed05g3131 468 Gene3D - 54 376 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0677 Sed-Chr1:4958088 Sed05g3131 Sed-Chr5:41400091 3.10E-226 dispersed
Sed01g0678 Sed-Chr1:4958088 Sed05g3131 Sed-Chr5:41400091 3.10E-226 dispersed
Sed05g1947 Sed-Chr5:32826486 Sed05g3131 Sed-Chr5:41400091 1.10E-170 dispersed
Sed05g3131 Sed-Chr5:41400091 Sed11g1235 Sed-Chr11:28150901 1.00E-115 dispersed
Sed05g3131 Sed-Chr5:41400091 Sed05g3132 Sed-Chr5:41400091 8.80E-269 tandem
Sed14g0603 Sed-Chr14:6105030 Sed05g3131 Sed-Chr5:41400091 2.90E-85 transposed
Sed01g0675 Sed-Chr1:4958007 Sed05g3131 Sed-Chr5:41400091 3.10E-226 wgd
Sed04g3342 Sed-Chr4:43582739 Sed05g3131 Sed-Chr5:41400091 1.40E-150 wgd
Sed05g1946 Sed-Chr5:32826486 Sed05g3131 Sed-Chr5:41400091 1.10E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3131 - - - 0.0