Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3132 ATGGGGACCTGTTTATCTACTGGCAATCAGAGTAGTTGCAATGGTGGAACCAATGGTGAAGGAGTTTCTGGATCCTGTTCGGGGATTAGAGTTCGTGCCAGGATTGAACGAAAGAGAACATTCTCAGATCATTTTTTTTCTATGCAGCATTTGAATTCTATATCTAATAGACTTGTTTATAATGGGAAGACTCGAAATTCTTGCATTTTCACTCAGCAAGGTCGCAAGGGTATCAACCAGGATGCCATGGTTGTATGGGAAGACTTCATATCAGATGGTGTAATTTTCTGTGGGGTGTTTGATGGTCATGGCCCACACGGTCATGTTGTTGCACGAAAGGTTCGAGATACTCTGCCTAGAAAGCTAGTGTCATTTTGGCAGTCATCTCAGTTGAAGCATAATAGATCAGATAGTTTTTCGTGCATCCGATGGAGTCAGAATAATTCAGTAGATGGTGAAGGACTGGACATGGATGGTTCACAGGAGGATAAATCAAGTTCTTTATGGAGAAGAGCTTTCCTCAAATCATATAAAGCCATGGACAAGGAGCTCAAATCTCATCCCAAATTGGACTGTTTCTGTAGTGGAAGCACTGCGGTCACTCTAGTGAAGCAGGTACATGATCAAGTTTTGTGCCATTTTAAATCCACTTTGATTTTGATTTACGTGCAGGGCTCGGATCTATTCGTGGGAAGTATTGGTGATTCTCGAGCAATTCTTGGATCTAAAGACAGCAGTGATTCCCTTGTAGCAACCCAATTGACAGTGGATCTAAAGCCTGATTTGCCCAGAGAAGCTGAAAGAATAAAAAAGTGTAAAGGAAGGGTGTTTGCATTGCAAGATGAGCCAGAAGTGCACAGAGTTTGGCTGCCATTTGACAATGCACCTGGATTAGCCATGGCTCGAGCATTCGGCGACTTCTGTCTGAAGGACTATGGAGTTATCTCTATTCCCGAATTCTCACACTGCATGCTTACAGATAATGATCTGTTTGTTGTCCTTGCATCAGATGGGGTTTGGGATGTATTGAGCAATGAACAGGTGGTTGAGATAGTGTATTCTGCCTCAACTCGATCATCAGCTGCCCGAATGGTGGTAGACTCGGCTGCTCACGAATGGAAGCTCAAGTATCCCACTTCAAAAATGGATGACTGTGCCGTCGTGTGCTTATTTTTGGACAGGAAAATGGATTCGGAATCAGAAAATGAAGAACAAACTCCTTCTGCTACTCTGCAGACCAATCAAATGGGTAGCACTGCAGATTCAGATGAAGACCAGAGGTCCGAGCCAAGTTTGCAAAGGACTTGTACGGTCCGATCATCGGAAGAAAACGACCAAGTTGGAAGATTATCTTCACATGGTGAAGAGAATATAGAATCAATGTCTATTGAAGATGAGAATTGGTTGGGGCTGGAGGGTGTAACAAGAGTAAACTCTCTTGTTCAGCTCCCTAGATTTTCTTGA 1464 43.24 MGTCLSTGNQSSCNGGTNGEGVSGSCSGIRVRARIERKRTFSDHFFSMQHLNSISNRLVYNGKTRNSCIFTQQGRKGINQDAMVVWEDFISDGVIFCGVFDGHGPHGHVVARKVRDTLPRKLVSFWQSSQLKHNRSDSFSCIRWSQNNSVDGEGLDMDGSQEDKSSSLWRRAFLKSYKAMDKELKSHPKLDCFCSGSTAVTLVKQVHDQVLCHFKSTLILIYVQGSDLFVGSIGDSRAILGSKDSSDSLVATQLTVDLKPDLPREAERIKKCKGRVFALQDEPEVHRVWLPFDNAPGLAMARAFGDFCLKDYGVISIPEFSHCMLTDNDLFVVLASDGVWDVLSNEQVVEIVYSASTRSSAARMVVDSAAHEWKLKYPTSKMDDCAVVCLFLDRKMDSESENEEQTPSATLQTNQMGSTADSDEDQRSEPSLQRTCTVRSSEENDQVGRLSSHGEENIESMSIEDENWLGLEGVTRVNSLVQLPRFS 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41400091 41403907 - Sed0003383.2 Sed05g3132 715758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3132 487 SUPERFAMILY PP2C-like 62 393 IPR036457 -
Sed05g3132 487 Gene3D - 54 395 IPR036457 -
Sed05g3132 487 Pfam Protein phosphatase 2C 114 369 IPR001932 -
Sed05g3132 487 MobiDBLite consensus disorder prediction 431 445 - -
Sed05g3132 487 MobiDBLite consensus disorder prediction 403 421 - -
Sed05g3132 487 MobiDBLite consensus disorder prediction 398 461 - -
Sed05g3132 487 SMART PP2C_4 55 390 IPR001932 -
Sed05g3132 487 CDD PP2Cc 72 392 IPR001932 -
Sed05g3132 487 ProSiteProfiles PPM-type phosphatase domain profile. 66 392 IPR001932 -
Sed05g3132 487 PANTHER PROTEIN PHOSPHATASE 68 391 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1946 Sed-Chr5:32826486 Sed05g3132 Sed-Chr5:41400091 3.30E-167 dispersed
Sed05g3132 Sed-Chr5:41400091 Sed11g1235 Sed-Chr11:28150901 1.90E-112 dispersed
Sed05g3131 Sed-Chr5:41400091 Sed05g3132 Sed-Chr5:41400091 8.80E-269 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3132 - - - 0.0