Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3138 ATGGATGAAGATTTAGACATTGATCACAATGATCTTGGATTGAGTTTTCGCCGGCGACAAGGCAACGCCGTGCCGGAAGAAGCTTCCGTTTCGCCTCGCCCTCTTAAGAAGATTCGTGACCCGATTCAGCCATTGGATTCTTCTTCTTCTTCTTCTTCATCTCATCAGCCATTTCCTTTCTTGAATCCAGCCTCCTCTGTTTCTCATGCTTCCCCTTCTACTTCAAGAGCTCTGTTTCCTTTTGCTTTGGAACCACCGCCATCCCAATTTCCTCATCAATTCAATACCGAGGCTTTTGCCCCTGTGGCTCATCGCCCGTCTGTTTTGACAACGGATAATCAGCGGCGATTTGGTTCAACTCAATACGGATTCGGCTACCCGCCGTATTTCATGGGAGAGTTTGCATCATTTCAGCAGCAGCAACATCAGCAGTTTCTTAAGCATTGGAATGAGTCTCTTGATTTGAACTCGAGAGGGGCAGGGTTTAGGCCACAAGTGCGGCCGTTGAACACGACGAAGCTGTACAGAGGAGTGAGGCAGAGACATTGGGGGAAATGGGTAGCGGAGATTCGTCTTCCTCGAAACAGAAACCGTCTCTGGCTTGGCACATTCGACACAGCCGAAGATGCCGCCTTGGCCTATGATCGAGAGGCTTTCAAATTGAGAGGAGAGAATGCAAGGCTTAATTTCCCCGAACTGTTTCTGAATAAAGATAAAGAAGAAGCCTCACAAACTCCTAACGGAGATGTGCCTCCTCAAGTACAGGATGTAGACAATAACAACAATCTTGACAATGACATAGAATTAGAGTCAAATAACGAGGCCGAGGCCGAGGCCGAGACCGAGACCGAGGCAGCAGCAGAGGGAGCGGCGGAGATGGTTTGGAGAGAAATGGCAGAGGCATGGCTAAACGCTATGCCAGCCGGTTGGGGTCCCGGTAGCCCTGTGTGGGATGATTTGGACACCACCAATAACCTCCTGCTGCAGCCACAACTTTCATTTGGCAACCCAATTCAGCAAGAATCATTTGTGTCTGATCTTCAAATGCAGCAGTTCAACTTAACATCAACAACTTCTTCACCTTCTTCATCTTGCCCCATGAAGCCCTTCTTTCACAAGGATGAAGATTAA 1131 48.45 MDEDLDIDHNDLGLSFRRRQGNAVPEEASVSPRPLKKIRDPIQPLDSSSSSSSSHQPFPFLNPASSVSHASPSTSRALFPFALEPPPSQFPHQFNTEAFAPVAHRPSVLTTDNQRRFGSTQYGFGYPPYFMGEFASFQQQQHQQFLKHWNESLDLNSRGAGFRPQVRPLNTTKLYRGVRQRHWGKWVAEIRLPRNRNRLWLGTFDTAEDAALAYDREAFKLRGENARLNFPELFLNKDKEEASQTPNGDVPPQVQDVDNNNNLDNDIELESNNEAEAEAETETEAAAEGAAEMVWREMAEAWLNAMPAGWGPGSPVWDDLDTTNNLLLQPQLSFGNPIQQESFVSDLQMQQFNLTSTTSSPSSSCPMKPFFHKDED 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41461014 41462473 + Sed0023479.1 Sed05g3138 715764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3138 376 SMART rav1_2 174 237 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3138 376 CDD AP2 173 233 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3138 376 MobiDBLite consensus disorder prediction 354 376 - -
Sed05g3138 376 MobiDBLite consensus disorder prediction 1 66 - -
Sed05g3138 376 Gene3D AP2/ERF domain 174 232 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3138 376 PRINTS Ethylene responsive element binding protein signature 197 213 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3138 376 PRINTS Ethylene responsive element binding protein signature 175 186 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3138 376 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 28 313 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Sed05g3138 376 ProSiteProfiles AP2/ERF domain profile. 174 231 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3138 376 SUPERFAMILY DNA-binding domain 174 232 IPR016177 GO:0003677(InterPro)
Sed05g3138 376 FunFam Ethylene-responsive transcription factor 2 173 232 - -
Sed05g3138 376 Coils Coil 260 280 - -
Sed05g3138 376 MobiDBLite consensus disorder prediction 43 66 - -
Sed05g3138 376 MobiDBLite consensus disorder prediction 240 264 - -
Sed05g3138 376 MobiDBLite consensus disorder prediction 246 264 - -
Sed05g3138 376 Pfam AP2 domain 174 223 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3138 Sed-Chr5:41461014 Sed12g1433 Sed-Chr12:11968969 1.70E-28 dispersed
Sed01g0665 Sed-Chr1:4880484 Sed05g3138 Sed-Chr5:41461014 1.40E-69 wgd
Sed05g1951 Sed-Chr5:32866141 Sed05g3138 Sed-Chr5:41461014 5.90E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38689 PF00847 AP2 4.60E-13 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3138 - - - 0.0