Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3141 ATGCAGCTCCTCCACCGCCGCCGTGGGTCTCGCCTCATAGAGGCTTTTTTCTTTGCCGCGGCCGTGCTCGAGTGGTTCGCGGCGGCGGCTCAGCTCCAACACCGTGTGCCGGATCTACATTGGCTTCCAGCTACCGCCACGTGGTACGGAGACCCCGAGGGGGACGGCAGCGACGGGGGAGCTTGTGGGTATGGAAATTTAGTGGATGTGAAGCCTCTAAGGGCCAGAGTTGGGGCTGTGAGTCCAGTTTTGTTCAAAAACGGTGAAGGCTGTGGAGCGTGTTACAAAGTGAAATGTCTAGACCAGAACATATGCTCTAGACGAGCCGTTACGATAATCGTCACCGACGAGTGTCCCGGTGGGTATTGTTCGAATGGAAATACCCACTTCGATCTCAGCGGTGCCGCCTTTGGCCGTATGGCTATCACGGGCGAAGGCGGGCAGCTCAGAAACCGAGGTGAACTCCCAGTTATTTACCGACGGACTCCCTGTAAGTATCCAGGCAAGAACATAGCCTTCCATGTGAACGAAGGCTCCACAGATTACTGGCTCTCACTCTTGGTTGAATTCGAGGATGGAGATGGAGACATTGGTTCAATGCAGATAAAAGAAGCTAATTCAGGGGAGTGGCTGGATATGAACCATTTATGGGGAGCAAATTGGTGCATTATTAGAGGGCCTTTAAAGGGTCCATTTTCAGTGAGATTATCAACATTATCTACAGGAAGAAGCCTCTCAGCCAGAGATATAATTCCAAGAAATTGGTCTCCAAAAGCCACTTACACTTCACGCCTTAAGTTCTTCTCTTAA 810 51.36 MQLLHRRRGSRLIEAFFFAAAVLEWFAAAAQLQHRVPDLHWLPATATWYGDPEGDGSDGGACGYGNLVDVKPLRARVGAVSPVLFKNGEGCGACYKVKCLDQNICSRRAVTIIVTDECPGGYCSNGNTHFDLSGAAFGRMAITGEGGQLRNRGELPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDIGSMQIKEANSGEWLDMNHLWGANWCIIRGPLKGPFSVRLSTLSTGRSLSARDIIPRNWSPKATYTSRLKFFS 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41476230 41478404 - Sed0000879.1 Sed05g3141 715767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3141 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 169 IPR007112 -
Sed05g3141 269 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576(InterPro)
Sed05g3141 269 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576(InterPro)
Sed05g3141 269 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576(InterPro)
Sed05g3141 269 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576(InterPro)
Sed05g3141 269 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576(InterPro)
Sed05g3141 269 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576(InterPro)
Sed05g3141 269 SUPERFAMILY PHL pollen allergen 169 263 IPR036749 -
Sed05g3141 269 PRINTS Major pollen allergen Lol pI signature 189 204 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed05g3141 269 PRINTS Major pollen allergen Lol pI signature 119 134 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed05g3141 269 PRINTS Major pollen allergen Lol pI signature 141 156 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed05g3141 269 PRINTS Major pollen allergen Lol pI signature 173 188 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed05g3141 269 PRINTS Major pollen allergen Lol pI signature 239 256 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed05g3141 269 PRINTS Major pollen allergen Lol pI signature 79 90 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Sed05g3141 269 FunFam Beta-expansin 3 166 268 - -
Sed05g3141 269 CDD DPBB_EXPB_N 41 164 - -
Sed05g3141 269 PANTHER EXPANSIN-B3 27 267 - GO:0006949(PANTHER)|GO:0009506(PANTHER)
Sed05g3141 269 SMART dpbb_1 77 159 IPR007112 -
Sed05g3141 269 Pfam Expansin C-terminal domain 171 252 IPR007117 -
Sed05g3141 269 Gene3D - 165 264 IPR036749 -
Sed05g3141 269 Pfam Lytic transglycolase 79 154 IPR009009 -
Sed05g3141 269 Gene3D - 27 164 IPR036908 -
Sed05g3141 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 263 IPR007117 -
Sed05g3141 269 FunFam Expansin B3 27 165 - -
Sed05g3141 269 SUPERFAMILY Barwin-like endoglucanases 40 168 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0848 Sed-Chr4:7374194 Sed05g3141 Sed-Chr5:41476230 2.20E-54 dispersed
Sed05g3141 Sed-Chr5:41476230 Sed08g2079 Sed-Chr8:34965760 1.00E-27 dispersed
Sed05g1952 Sed-Chr5:32873225 Sed05g3141 Sed-Chr5:41476230 2.70E-113 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3141 K20628 - csv:101202998 492.656