Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3158 ATGGGTTGTCTCTGTTCTAAGTTGTTAGTGGAGGAGTGTGGTGACCATGAACTTGATAGCTTTAAAAGAGCTTATTCCTCCAGAAAACAGCCCTCTGGATTGAGAATTTCGAGTGCTGGCTCTCCGAAATCGGAGACAGTTTGGGGAAAAGATAGGTTGGATTGTGGTGATGTTACGGTTATGGTGTTCGATTCGAAGGCGAATGGTTCTTTGTGCTTACATGGTGAGGTTCCTAATGAGAGGAAGAAGGTGGAGATCCCTGATGTCTCCATTTTGAATCATCCATGTTTGGGAAAGATTCCGAAGGCTATCGAGGCCGAGCAGGTCGCTGCTGGGTGGCCGAGTTGGCTGGCTGGGGTGGCTGGTGAGGCTATCAATGGCTGGGTGCCAAAACTTGCAAAAAACTACATCAAGTTGGAAAAAATTGGCCAGGGAACTTACAGCAGTGTGTATAAAGCTCGTGATATCGATCGAGATAAACTTGTGGCATTGAAAAGGGTCCGGTTCGACAATAAAGATACCGAGAGTATCAAGTTTATGGCAAGAGAAATCCTTGTTTTGCGAAGACTTGATCATCCAAATATTGTTAAGTTGGAAGGTTTGATCACATCACAAACATCATGTACCATGTACCTTGTTTTCGAATATATGGAACATGATCTTACAGGACTTTCATCACGGCCTGGCACGTCGTTCACCGAACCACAGATGAAGTGTTACATGAAGCAGCTCTTGAGTGGACTTGATCACTGTCACAGAAATGGGGTTCTGCATCGTGACATAAAGGGCTCAAATCTTCTTATTGACAACAATGGCATTTTGAAGATAGCAGATTTTGGGTTGTCTGTTTTCTTTGATTCGCAGCCGAAAGTTCCGATGACGAGTCGTGTAATAACCCTTTGGTATCGACCGCCCGAACTTCTACTTGGAGCATCTCAATATGGAGCTGAAGTTGATTTATGGAGCGCTGGTTGCATTCTAGGAGAATTATATGCCAGCAAACCTATCTTACCAGGAAAAACAGAGGTTGAACAACTTCATAAAATATTTAAGCTATGTGGTTCCCCCTCCAAGGACTATTGGAGCAAGTTGCATTTGAAGCATTCAACAAGCATGAAGCCTCCACAGTCGTACGAAAGATGTCTTCGGGTAATGTACAGCGATCTTCCTCGTGCTGCTGTTGAGCTTATGGACACTTTGCTGTCTATAGATCCTGCAGGGCGAGGAACTGCAGCTTCAGCGCTCGATAGTGAGTTCTTTACCACACGGCCGTTGCCGTGCGATCCTTCAAGTTTGCCAAAATACCCTCCCAGCAAAGAGATCGATTCAAAAATGCGGGAAGAGGAAGCAAGAAGGCAACACGGAGTAGTTGGCGGAAGAAACCGAGCAATTGACTCGGAAGCAAAAGGGCTGAAGCAATCTCAGGTAGTTCCTTCAGGAAAGGCTAACGCCGAGTTGGTTATATCACTACTGAGAAAACAGAGTCGTTCGACCTCGAAGTACCGGAGTGAAGCGTGTCCTTATGGTTCGGTGTCCAAGAGAACATCAAATTCAGGACCTATAACTCAGGGACCAAGATGTCCCAACTCCAAAAAGGAACTGAAGCATGTTTCGGCGATTCGGAGCGAGTATATCACCTCATCTGGTCCTATTGAATTTGTTTCTTACAAACATGTCAAAGAAAGAAATGGAGTTTCAAAGCCAGAATCAACTAGTCAAGACAAAAATCATCCTCTATCCAGCTCTGCAGAAGAGTTCATAAAAAAACTGAACAGAGACCAACTTGTTAGTACAAATTCTTGCAAGTTGGAATATTCAAAAGCCTCAGCTCTGATAGTTGGCTAA 1845 44.5 MGCLCSKLLVEECGDHELDSFKRAYSSRKQPSGLRISSAGSPKSETVWGKDRLDCGDVTVMVFDSKANGSLCLHGEVPNERKKVEIPDVSILNHPCLGKIPKAIEAEQVAAGWPSWLAGVAGEAINGWVPKLAKNYIKLEKIGQGTYSSVYKARDIDRDKLVALKRVRFDNKDTESIKFMAREILVLRRLDHPNIVKLEGLITSQTSCTMYLVFEYMEHDLTGLSSRPGTSFTEPQMKCYMKQLLSGLDHCHRNGVLHRDIKGSNLLIDNNGILKIADFGLSVFFDSQPKVPMTSRVITLWYRPPELLLGASQYGAEVDLWSAGCILGELYASKPILPGKTEVEQLHKIFKLCGSPSKDYWSKLHLKHSTSMKPPQSYERCLRVMYSDLPRAAVELMDTLLSIDPAGRGTAASALDSEFFTTRPLPCDPSSLPKYPPSKEIDSKMREEEARRQHGVVGGRNRAIDSEAKGLKQSQVVPSGKANAELVISLLRKQSRSTSKYRSEACPYGSVSKRTSNSGPITQGPRCPNSKKELKHVSAIRSEYITSSGPIEFVSYKHVKERNGVSKPESTSQDKNHPLSSSAEEFIKKLNRDQLVSTNSCKLEYSKASALIVG 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41561967 41565442 + Sed0012880.1 Sed05g3158 715784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3158 614 SUPERFAMILY Protein kinase-like (PK-like) 129 428 IPR011009 -
Sed05g3158 614 Pfam Protein kinase domain 136 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3158 614 ProSitePatterns Protein kinases ATP-binding region signature. 142 165 IPR017441 GO:0005524(InterPro)
Sed05g3158 614 SMART serkin_6 136 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3158 614 FunFam probable serine/threonine-protein kinase At1g54610 123 218 - -
Sed05g3158 614 Gene3D Phosphorylase Kinase; domain 1 123 218 - -
Sed05g3158 614 PANTHER CELL DIVISION PROTEIN KINASE 136 420 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Sed05g3158 614 Gene3D Transferase(Phosphotransferase) domain 1 219 458 - -
Sed05g3158 614 MobiDBLite consensus disorder prediction 564 584 - -
Sed05g3158 614 MobiDBLite consensus disorder prediction 501 525 - -
Sed05g3158 614 MobiDBLite consensus disorder prediction 501 530 - -
Sed05g3158 614 ProSiteProfiles Protein kinase domain profile. 136 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3158 614 CDD STKc_CDK9_like 136 420 - -
Sed05g3158 614 FunFam probable serine/threonine-protein kinase At1g54610 219 459 - -
Sed05g3158 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3158 Sed-Chr5:41561967 Sed05g3160 Sed-Chr5:41569146 7.50E-159 dispersed
Sed05g3158 Sed-Chr5:41561967 Sed05g3159 Sed-Chr5:41561967 5.30E-290 tandem
Sed01g0174 Sed-Chr1:1402308 Sed05g3158 Sed-Chr5:41561967 1.50E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79269 PF00069 Pkinase 1.40E-67 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3158 - - - 0.0