Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3159 ATGGGTTGTCTCTGTTCTAAGTTGTTAGTGGAGGAGTGTGGTGACCATGAACTTGATAGCTTTAAAAGAGCTTATTCCTCCAGAAAACAGCCCTCTGGATTGAGAATTTCGAGTGCTGGCTCTCCGAAATCGGAGACAGTTTGGGGAAAAGATAGGTTGGATTGTGGTGATGTTACGGTTATGGTGTTCGATTCGAAGGCGAATGGTTCTTTGTGCTTACATGGTGAGGTTCCTAATGAGAGGAAGAAGGTGGAGATCCCTGATGTCTCCATTTTGAATCATCCATGTTTGGGAAAGATTCCGAAGGCTATCGAGGCCGAGCAGGTCGCTGCTGGGTGGCCGAGTTGGCTGGCTGGGGTGGCTGGTGAGGCTATCAATGGCTGGGTGCCAAAACTTGCAAAAAACTACATCAAGTTGGAAAAAATTGGCCAGGGAACTTACAGCAGTGTGTATAAAGCTCGTGATATCGATCGAGATAAACTTGTGGCATTGAAAAGGGTCCGGTTCGACAATAAAGATACCGAGAGTATCAAGTTTATGGCAAGAGAAATCCTTGTTTTGCGAAGACTTGATCATCCAAATATTGTTAAGTTGGAAGGTTTGATCACATCACAAACATCATGTACCATGTACCTTGTTTTCGAATATATGGAACATGATCTTACAGGACTTTCATCACGGCCTGGCACGTCGTTCACCGAACCACAGATGAAGTGTTACATGAAGCAGCTCTTGAGTGGACTTGATCACTGTCACAGAAATGGGGTTCTGCATCGTGACATAAAGGGCTCAAATCTTCTTATTGACAACAATGGCATTTTGAAGATAGCAGATTTTGGGTTGTCTGTTTTCTTTGATTCGCAGCCGAAAGTTCCGATGACGAGTCGTGTAATAACCCTTTGGTATCGACCGCCCGAACTTCTACTTGGAGCATCTCAATATGGAGCTGAAGTTGATTTATGGAGCGCTGGTTGCATTCTAGGAGAATTATATGCCAGCAAACCTATCTTACCAGGAAAAACAGAGGTTGAACAACTTCATAAAATATTTAAGCTATGTGGTTCCCCCTCCAAGGACTATTGGAGCAAGTTGCATTTGAAGCATTCAACAAGCATGAAGCCTCCACAGTCGTACGAAAGATGTCTTCGGGTAATGTACAGCGATCTTCCTCGTGCTGCTGTTGAGCTTATGGACACTTTGCTGTCTATAGATCCTGCAGGGCGAGGAACTGCAGCTTCAGCGCTCGATAGTGAGTTCTTTACCACACGGCCGTTGCCGTGCGATCCTTCAAGTTTGCCAAAATACCCTCCCAGCAAAGAGATCGATTCAAAAATGCGGGAAGAGGAAGCAAGAAGGCAACACGGAGTAGTTGGCGGAAGAAACCGAGCAATTGACTCGGAAGCAAAAGGGCTGAAGCAATCTCAGGTAGTTCCTTCAGGAAAGGCTAACGCCGAGTTGGTTATATCACTACTGGTAAACTCCAAATGA 1488 45.23 MGCLCSKLLVEECGDHELDSFKRAYSSRKQPSGLRISSAGSPKSETVWGKDRLDCGDVTVMVFDSKANGSLCLHGEVPNERKKVEIPDVSILNHPCLGKIPKAIEAEQVAAGWPSWLAGVAGEAINGWVPKLAKNYIKLEKIGQGTYSSVYKARDIDRDKLVALKRVRFDNKDTESIKFMAREILVLRRLDHPNIVKLEGLITSQTSCTMYLVFEYMEHDLTGLSSRPGTSFTEPQMKCYMKQLLSGLDHCHRNGVLHRDIKGSNLLIDNNGILKIADFGLSVFFDSQPKVPMTSRVITLWYRPPELLLGASQYGAEVDLWSAGCILGELYASKPILPGKTEVEQLHKIFKLCGSPSKDYWSKLHLKHSTSMKPPQSYERCLRVMYSDLPRAAVELMDTLLSIDPAGRGTAASALDSEFFTTRPLPCDPSSLPKYPPSKEIDSKMREEEARRQHGVVGGRNRAIDSEAKGLKQSQVVPSGKANAELVISLLVNSK 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41561967 41565442 + Sed0012880.2 Sed05g3159 715785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3159 495 SUPERFAMILY Protein kinase-like (PK-like) 129 428 IPR011009 -
Sed05g3159 495 ProSitePatterns Protein kinases ATP-binding region signature. 142 165 IPR017441 GO:0005524(InterPro)
Sed05g3159 495 MobiDBLite consensus disorder prediction 439 458 - -
Sed05g3159 495 Pfam Protein kinase domain 136 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3159 495 SMART serkin_6 136 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3159 495 Gene3D Phosphorylase Kinase; domain 1 123 218 - -
Sed05g3159 495 Gene3D Transferase(Phosphotransferase) domain 1 219 458 - -
Sed05g3159 495 MobiDBLite consensus disorder prediction 426 476 - -
Sed05g3159 495 FunFam probable serine/threonine-protein kinase At1g54610 219 459 - -
Sed05g3159 495 ProSiteProfiles Protein kinase domain profile. 136 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3159 495 PANTHER CELL DIVISION PROTEIN KINASE 136 420 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Sed05g3159 495 CDD STKc_CDK9_like 136 420 - -
Sed05g3159 495 FunFam probable serine/threonine-protein kinase At1g54610 123 218 - -
Sed05g3159 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3159 Sed-Chr5:41561967 Sed12g0863 Sed-Chr12:5354875 2.70E-151 dispersed
Sed05g3158 Sed-Chr5:41561967 Sed05g3159 Sed-Chr5:41561967 5.30E-290 tandem
Sed05g3159 Sed-Chr5:41561967 Sed05g3160 Sed-Chr5:41569146 6.00E-159 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79270 PF00069 Pkinase 7.80E-68 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3159 - - - 0.0