Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3160 ATGGGTTGTTATTATTCCAAGCCTTCTGTTGATGAAGATGGGCGGATCAAAGAGACTAAGAAATTTTCTTCACAAAAGGTTCAACGAGTCAATTTATCTAGAAAAGAAGAGGATGTGAGATTGAATTCTTTGAGAAGAGACGAAGGTGTTCGATTAAATGTCTCACAGAGATCTGATAGTATTAAATCAAGGGTGAAAGCTGATGGGGGTGACTTGAAAGTTGCTTATTTGGATAAGAAAGTCAACAGCTCAAACAGGGTACATGATGATCAAATTGAGAAAAAGAAAAGGGAGAGGTTTGAGGCTGCCATTTCTGCTAATTATCCTGGAAGAGGAACCATTCCAAAGGCTGTTGAAGCAGAGCAAGTTGCAGCTGGTTGGCCTTGTTGGCTTTCCTCTGTGGCCGCGGAAGCTCTCGAGGGATGGCTGCCACGAAAAGCCGACACTTTCGAGAAACTAGACAAGATTGGACAAGGGACTTATAGTAGTGTTTACAAGGCTCGTGATATCTTGCATGGTAAACTAGTTGCTCTAAAACGAGTTCGTTTCGACAATCTTGATGTGGAGAGTGTCAAGTTTATGGCTCGAGAAATCCTTATCCTTCGTAGACTTGATCATCCAAATGTTATAAAATTGGAAGGCTTGATTACGTCTCCCCGATCATGTAGCCTATACCTCATTTTTGAGTATATGGAGCATGATCTTACAGGGCTCGGGTCTCGGCCCAATGTCAAGTTCAGTGAACCACAGGTTAAATGCTATATGCAACAACTTCTAAGGGGACTTGATTATTGTCACAACCGTGGTGTCCTCCACCGTGATATCAAGGGTTCAAATCTCTTAATCGATGACAATGGTATCTTGAAGATTGCAGATTTTGGATTAGCTAGTCCTTTTGACCCTCACAATTGTGGCCCCTTAACAAGTCGTGTGGTGACTCTATGGTACCGACCACCAGAACTTCTGCTTGGAGCTTCTCATTATGGGGTTGCAGTGGACATGTGGAGTATTGGCTGCATACTTGCTGAGCTATATGCTGGGAAGCCAATCTTACCTGGAAAAACTGAGGTCGAACAGTTGCATAAGATATTTAAACTTTGTGGGTCACCACCTGAGGATTATTGGAGGAAATTGCAGTTACCTCATTCAACCGGATTCAAGACAGCTCAGCCATACCGACGTTGTATCGTGGAAATGCTCAAGGATTTCCCACCTGCTGCAGTCGGTCTCGTGGATAAGTTGCTTTCAGTAGATCCTACTCATCGAGGAACGGCAGCTGCTGCTCTAAAGAGTGAGTTTTTTACATCCAAACCTCTCGCTTGCGAACCTTCGAGTTTGCCTAAATATCCTCCTAGCAAAGAGATCGATTCTAAATTCCAGGGCTGCAAAAGGCAGTCAAGAGTTGAGGGCAAAGATCCTAAAGTTTCTGTGGTAGGAAGGCAATCTAGAGAAGGACACCTTAATCATGCTCTGCATGATAAGGATGAAGCAAGCATGTTAATGCAGAAAAGGCAAGGTCATTCAAGAATGATTGGCTGGAGCGAAGTGTTCAATCCTCATGGGGACGAAACGGTTTCTGGCTTTTTGATTGCTCCACCCAAACAAAACCAATCTGTCACAGAAATTTGCCCTGATACAGGCAGGATTTCATATTCAGGGCCCCTAATTAGCAAACCAGATTGGATGAAATCTGGGAAGCAATTTGATGACCATTCGATGGTGCTGGATGGATCGAATCTCTCAGTATTATCTCGTTTAGTAGCAGCGAGGTCTAATATTACATCTGATCGTCCTTACGATAGACCTGGCCCGTCACATTCAGAAACAGGCAGATTGCCTGACTTTATGAGGGATTCGGAGTCAACGAGAAAGCAGGATCGGATATTTTATACACACCGAGTTGCAGATTCATACCGAATAGAGAACGAAAAAGCTTGTGCTAAAGATCAGTCCCAGTTTGCTCATGGGACAGACATAAACAAGCTTTACACTTCTGGTCCAATCCTTGGTCCATCAAACAACTTAGACAAAATTCTGAAAGAGCGAGAACGTCAGATTCAAGAACACGCTCGACAAGCTCGACACGGTAAAGCTAGTAACAGTCAGATGAAGGGTGCAAGAACATCAACTGGAAAACATCTCATGTCGAGCCATGGCATGTGA 2163 43.69 MGCYYSKPSVDEDGRIKETKKFSSQKVQRVNLSRKEEDVRLNSLRRDEGVRLNVSQRSDSIKSRVKADGGDLKVAYLDKKVNSSNRVHDDQIEKKKRERFEAAISANYPGRGTIPKAVEAEQVAAGWPCWLSSVAAEALEGWLPRKADTFEKLDKIGQGTYSSVYKARDILHGKLVALKRVRFDNLDVESVKFMAREILILRRLDHPNVIKLEGLITSPRSCSLYLIFEYMEHDLTGLGSRPNVKFSEPQVKCYMQQLLRGLDYCHNRGVLHRDIKGSNLLIDDNGILKIADFGLASPFDPHNCGPLTSRVVTLWYRPPELLLGASHYGVAVDMWSIGCILAELYAGKPILPGKTEVEQLHKIFKLCGSPPEDYWRKLQLPHSTGFKTAQPYRRCIVEMLKDFPPAAVGLVDKLLSVDPTHRGTAAAALKSEFFTSKPLACEPSSLPKYPPSKEIDSKFQGCKRQSRVEGKDPKVSVVGRQSREGHLNHALHDKDEASMLMQKRQGHSRMIGWSEVFNPHGDETVSGFLIAPPKQNQSVTEICPDTGRISYSGPLISKPDWMKSGKQFDDHSMVLDGSNLSVLSRLVAARSNITSDRPYDRPGPSHSETGRLPDFMRDSESTRKQDRIFYTHRVADSYRIENEKACAKDQSQFAHGTDINKLYTSGPILGPSNNLDKILKERERQIQEHARQARHGKASNSQMKGARTSTGKHLMSSHGM 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41569146 41573226 + Sed0015760.1 Sed05g3160 715786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3160 720 ProSitePatterns Protein kinases ATP-binding region signature. 156 179 IPR017441 GO:0005524(InterPro)
Sed05g3160 720 Coils Coil 672 692 - -
Sed05g3160 720 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g3160 720 MobiDBLite consensus disorder prediction 696 720 - -
Sed05g3160 720 SMART serkin_6 150 434 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3160 720 FunFam probable serine/threonine-protein kinase At1g54610 233 472 - -
Sed05g3160 720 Pfam Protein kinase domain 150 434 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3160 720 MobiDBLite consensus disorder prediction 686 720 - -
Sed05g3160 720 Gene3D Transferase(Phosphotransferase) domain 1 233 473 - -
Sed05g3160 720 CDD STKc_CDK9_like 150 434 - -
Sed05g3160 720 ProSiteProfiles Protein kinase domain profile. 150 434 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3160 720 FunFam probable serine/threonine-protein kinase At1g54610 137 232 - -
Sed05g3160 720 PANTHER CELL DIVISION PROTEIN KINASE 149 434 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Sed05g3160 720 MobiDBLite consensus disorder prediction 594 623 - -
Sed05g3160 720 SUPERFAMILY Protein kinase-like (PK-like) 145 439 IPR011009 -
Sed05g3160 720 Gene3D Phosphorylase Kinase; domain 1 137 232 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0174 Sed-Chr1:1402308 Sed05g3160 Sed-Chr5:41569146 0.00E+00 dispersed
Sed01g0175 Sed-Chr1:1402308 Sed05g3160 Sed-Chr5:41569146 2.70E-250 dispersed
Sed04g1587 Sed-Chr4:30652697 Sed05g3160 Sed-Chr5:41569146 1.40E-193 dispersed
Sed05g3158 Sed-Chr5:41561967 Sed05g3160 Sed-Chr5:41569146 7.50E-159 dispersed
Sed05g3160 Sed-Chr5:41569146 Sed13g0562 Sed-Chr13:3905877 4.60E-168 dispersed
Sed05g3159 Sed-Chr5:41561967 Sed05g3160 Sed-Chr5:41569146 6.00E-159 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79271 PF00069 Pkinase 1.10E-67 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3160 - - - 0.0