Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3193 ATGGAGGATCAGCGAGATGATGTTGCTGCGCCATCAGAGCAAGGGCCTTCCAATGCTCCCTGGTGGTCTTCTGATTTTGTGGATAAATTTGGATCTGTTTCTTTGGGTCCTCGGGATGATATTGTAAGTGAAAAAGAAGAGATCATCAATTCTGACCAAGATGTGGTTTTGTCTCCTCAAAGAGCATCTCAAATTCTTTGGTCTACTGGAATGCTTTGTGAACCAATTCCAGATGGTTTCTATTCTGTTATACTGGATAAAAGGTTGAAAGAGCGGTTCCATAGTCTTCCTTCGCTGGATGAGCTTCGTGCTTTGGAGGCCAAAGGTTACAGAAACGATGTTATTCTTGTGGAGACGGAAAAAGATAAAAAGATTTCTATGCTGAAGCAACTGATCTTGACACTGGTTAAAGGATTGAGTTCTAATCCAGCTGCAATTATCAAGAAGATTGCTGGACTGGTTTCTGATTTTTATAAACGGCCAATTTTAGAAAGCCCTGCAAAAGCTGTTGCAGAAGAAAGCTCCTATTTATTTGAGGATAATAAAGGCATTCAATTACTTGGACAAATAAAATTTGGTTCAAGCCGGCCAAGAGCTATTTTATTCAAGGCTCTAGCAGACACTGTAGGGCTTGAAAGCCGTCTCATGGTGGGCTTGCCGAATGATGGGGCTATTGGATGCGTGGAATCATACAAGCATATGTCCGTGACAGTTGTGTTGAATTCTGTAGAACTAGTTGTTGATCTTATGCGATTTCCTGGCCAGTTGTTGCCTCAGTCAACTAAGGCTATTTTTATGACACATATTTCTGCTGCTGGGGAAAGCGATTCTGCAGAAAATGACTCATGTGATTCCCCATTAGAACCTAATAGTCCTCTTTATGGATACTCAGAGAGAGTTGATTCTGACAGTGTTGATAAAGGTGAGAGCCTTCAATTCCACAGAAAATTTGAAGCAGCTTCAAATGCACATGGTCGTCCCTCTTTACGCAACATGATGTTGCGATCAAGTACAACAGTTGATAGGAAATTGAGTTTATCACATAGTACCCCTAACATTGCAAATGCATTTTGGCGACGTAATCGGAGAAAGGATATTGCTGAACAGCGGACTGCTAGTTCAAGTCCAGAGCATCCTTCATTTCGGGCACGTGGCCGGTCCATGCTTAGTGGGGATAGGAAAGCCTCGAGAGATTTTTCTGATGATGTCTCTACTTCAAGATCAGATGGTGCTTCAACTTCAACTTCAACTTCAGAAGCACGTCGAATAAGAAGAAGGAGCATCAGCATTACTCCAGAGATTGGTGATGATATCGTGAGGGCTGTGCGAGCAATGAATGAAACACTGAAGCAAAATCGTCTTTCGAGAGAACAAGGAGGCAGGTCGTTCTCCCACCTTTCGAATGAAAGAAATAGTAGTTCAGATGTTCGAAGAAATGATCTAGCTGAATCTCAAAGAGCAATATCATTACCATCATCTCCACATGAGTATAGGGGCCAAACATCTGATAGAAGTGAGCATGCAACATATGTGAATGATGATTTAGCCTCAAAATGGACCAAAGTTCTTGAATCTTTTTCCTTGAACGACAAACCACTATTACCTTACCCAGAATGGAACATTGATTACTCAGAACTGACAGTTGGAATCCGTATTGGAATTGGGTTTTTTGGAGAAGTTTTCCGAGGCATTTGGAATGGAACAGATGTGGCAATCAAAGTCTTCCTAGAACAAGATCTAACTCCAGAAAACATTGAAGACTTCTGTAATGAGATATCAATTCTTAGTCGTCTTCGACATCCTAATGTTATATTGTTTCTTGGTGCGTGTACAAAGCCACCGCGCTTGTCAATGGTTACTGAATACATGGAAATGGGCTCCTTGTATTCCTTGATCCATTTGAGTGGTCAGAAAAAAAAACTTAATTGGCGGAGGAGACTAAAGATGTTGCGTGACATATGCAGGGGTTTGATGTGCATACACCGAACGAAAATAGCCCATCGAGACCTAAAAAGTGCCAATTGCCTGGTGAACAAGCATTGGAACGTCAAGATATGTGATTTTGGACTTTCAAGAATATTGGTAGAGGCTCCCGGAAGAGGGTCTCCATCTGCAGGAACTCCAGAATGGATGGCTCCTGAGCTCTTCCGAAACGAACCCTTCACTGAAAAATGTGATATTTTCAGCCTCGGGGTCATAATGTGGGAGCTCTGCACGCTAAGTAGACCATGGGACGGCGTTCCACCAGAGCGGGTAGTTTATGCTGTTGGCACAGAGGGATCACGCCTAGAGATTCCTGAAGGCCCACTTGGCAGGCTTATATCAGATTGTTGGGCAGAACCAAATGATCGTCCAAGCTGCGAAGAGATTCTCTCACGCTTGCTCGACTGCGAGTACTCACTTTCTTGA 2409 42.88 MEDQRDDVAAPSEQGPSNAPWWSSDFVDKFGSVSLGPRDDIVSEKEEIINSDQDVVLSPQRASQILWSTGMLCEPIPDGFYSVILDKRLKERFHSLPSLDELRALEAKGYRNDVILVETEKDKKISMLKQLILTLVKGLSSNPAAIIKKIAGLVSDFYKRPILESPAKAVAEESSYLFEDNKGIQLLGQIKFGSSRPRAILFKALADTVGLESRLMVGLPNDGAIGCVESYKHMSVTVVLNSVELVVDLMRFPGQLLPQSTKAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGYSERVDSDSVDKGESLQFHRKFEAASNAHGRPSLRNMMLRSSTTVDRKLSLSHSTPNIANAFWRRNRRKDIAEQRTASSSPEHPSFRARGRSMLSGDRKASRDFSDDVSTSRSDGASTSTSTSEARRIRRRSISITPEIGDDIVRAVRAMNETLKQNRLSREQGGRSFSHLSNERNSSSDVRRNDLAESQRAISLPSSPHEYRGQTSDRSEHATYVNDDLASKWTKVLESFSLNDKPLLPYPEWNIDYSELTVGIRIGIGFFGEVFRGIWNGTDVAIKVFLEQDLTPENIEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMEMGSLYSLIHLSGQKKKLNWRRRLKMLRDICRGLMCIHRTKIAHRDLKSANCLVNKHWNVKICDFGLSRILVEAPGRGSPSAGTPEWMAPELFRNEPFTEKCDIFSLGVIMWELCTLSRPWDGVPPERVVYAVGTEGSRLEIPEGPLGRLISDCWAEPNDRPSCEEILSRLLDCEYSLS 802
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41737629 41752591 + Sed0000624.1 Sed05g3193 715819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3193 802 ProSitePatterns Protein kinases ATP-binding region signature. 552 573 IPR017441 GO:0005524(InterPro)
Sed05g3193 802 MobiDBLite consensus disorder prediction 450 470 - -
Sed05g3193 802 Gene3D Phosphorylase Kinase; domain 1 539 624 - -
Sed05g3193 802 MobiDBLite consensus disorder prediction 387 404 - -
Sed05g3193 802 MobiDBLite consensus disorder prediction 450 506 - -
Sed05g3193 802 SUPERFAMILY Protein kinase-like (PK-like) 524 794 IPR011009 -
Sed05g3193 802 PANTHER SERINE-THREONINE PROTEIN KINASE 331 794 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed05g3193 802 SMART serkin_6 546 795 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3193 802 MobiDBLite consensus disorder prediction 1 23 - -
Sed05g3193 802 FunFam Serine/threonine-protein kinase isoform 1 537 624 - -
Sed05g3193 802 Pfam Protein tyrosine and serine/threonine kinase 548 794 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g3193 802 ProSitePatterns Serine/Threonine protein kinases active-site signature. 665 677 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g3193 802 MobiDBLite consensus disorder prediction 275 296 - -
Sed05g3193 802 CDD STKc_MAP3K-like 552 794 - -
Sed05g3193 802 ProSiteProfiles Protein kinase domain profile. 546 801 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3193 802 Pfam Ethylene-responsive protein kinase Le-CTR1 60 256 - -
Sed05g3193 802 Gene3D Transferase(Phosphotransferase) domain 1 625 801 - -
Sed05g3193 802 MobiDBLite consensus disorder prediction 366 424 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0155 Sed-Chr1:1289395 Sed05g3193 Sed-Chr5:41737629 0.00E+00 dispersed
Sed01g0156 Sed-Chr1:1289395 Sed05g3193 Sed-Chr5:41737629 0.00E+00 dispersed
Sed05g3193 Sed-Chr5:41737629 Sed05g3195 Sed-Chr5:41737629 0.00E+00 dispersed
Sed05g3193 Sed-Chr5:41737629 Sed05g3194 Sed-Chr5:41737629 0.00E+00 tandem
Sed01g0153 Sed-Chr1:1289395 Sed05g3193 Sed-Chr5:41737629 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79273 PF07714 PK_Tyr_Ser-Thr 6.90E-58 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3193 - - - 0.0