Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3196 ATGGAGGATCAGCGAGATGATGTTGCTGCGCCATCAGAGCAAGGGCCTTCCAATGCTCCCTGGTGGTCTTCTGATTTTGTGGATAAATTTGGATCTGTTTCTTTGGGTCCTCGGGATGATATTGTAAGTGAAAAAGAAGAGATCATCAATTCTGACCAAGATGTGGTTTTGTCTCCTCAAAGAGCATCTCAAATTCTTTGGTCTACTGGAATGCTTTGTGAACCAATTCCAGATGGTTTCTATTCTGTTATACTGGATAAAAGGTTGAAAGAGCGGTTCCATAGTCTTCCTTCGCTGGATGAGCTTCGTGCTTTGGAGGCCAAAGGTTACAGAAACGATGTTATTCTTGTGGAGACGGAAAAAGATAAAAAGATTTCTATGCTGAAGCAACTGATCTTGACACTGGTTAAAGGATTGAGTTCTAATCCAGCTGCAATTATCAAGAAGATTGCTGGACTGGTTTCTGATTTTTATAAACGGCCAATTTTAGAAAGCCCTGCAAAAGCTGTTGCAGAAGAAAGCTCCTATTTATTTGAGGATAATAAAGGCATTCAATTACTTGGACAAATAAAATTTGGTTCAAGCCGGCCAAGAGCTATTTTATTCAAGGCTCTAGCAGACACTGTAGGGCTTGAAAGCCGTCTCATGGTGGGCTTGCCGAATGATGGGGCTATTGGATGCGTGGAATCATACAAGCATATGTCCGTGACAGTTGTGTTGAATTCTGTAGAACTAGTTGTTGATCTTATGCGATTTCCTGGCCAGTTGTTGCCTCAGTCAACTAAGGCTATTTTTATGACACATATTTCTGCTGCTGGGGAAAGCGATTCTGCAGAAAATGACTCATGTGATTCCCCATTAGAACCTAATAGTCCTCTTTATGGATACTCAGAGAGAGTTGATTCTGACAGAAAATTTGAAGCAGCTTCAAATGCACATGGTCGTCCCTCTTTACGCAACATGATGTTGCGATCAAGTACAACAGTTGATAGGAAATTGAGTTTATCACATAGTACCCCTAACATTGCAAATGCATTTTGGCGACGTAATCGGAGAAAGGATATTGCTGAACAGCGGACTGCTAGTTCAAGTCCAGAGCATCCTTCATTTCGGGCACGTGGCCGGTCCATGCTTAGTGGGGATAGGAAAGCCTCGAGAGATTTTTCTGATGATGTCTCTACTTCAAGATCAGATGGTGCTTCAACTTCAACTTCAACTTCAGAAGCACGTCGAATAAGAAGAAGGAGCATCAGCATTACTCCAGAGATTGGTGATGATATCGTGAGGGCTGTGCGAGCAATGAATGAAACACTGAAGCAAAATCGTCTTTCGAGAGAACAAGGAGGCAGGTCGTTCTCCCACCTTTCGAATGAAAGAAATAGTAGTTCAGATGTTCGAAGAAATGATCTAGCTGAATCTCAAAGAGCAATATCATTACCATCATCTCCACATGAGTATAGGGGCCAAACATCTGATAGAAGTGAGCATGCAACATATGTGAATGATGATTTAGCCTCAAAATGGACCAAAGTTCTTGAATCTTTTTCCTTGAACGACAAACCACTATTACCTTACCCAGAATGGAACATTGATTACTCAGAACTGACAGTTGGAATCCGTATTGGAATTGGGTTTTTTGGAGAAGTTTTCCGAGGCATTTGGAATGGAACAGATGTGGCAATCAAAGTCTTCCTAGAACAAGATCTAACTCCAGAAAACATTGAAGACTTCTGTAATGAGATATCAATTCTTAGTCGTCTTCGACATCCTAATGTTATATTGTTTCTTGGTGCGTGTACAAAGCCACCGCGCTTGTCAATGGTTACTGAATACATGGAAATGGGCTCCTTGTATTCCTTGATCCATTTGAGTGGTCAGAAAAAAAAACTTAATTGGCGGAGGAGACTAAAGATGTTGCGTGACATATGCAGGGGTTTGATGTGCATACACCGAACGAAAATAGCCCATCGAGACCTAAAAAGTGCCAATTGCCTGGTGAACAAGCATTGGAACGTCAAGATATGTGATTTTGGACTTTCAAGAATATTGGTAGAGGCTCCCGGAAGAGGGTCTCCATCTGCAGGAACTCCAGAATGGATGGCTCCTGAGCTCTTCCGAAACGAACCCTTCACTGAAAAATGTGATATTTTCAGCCTCGGGGTCATAATGTGGGAGCTCTGCACGCTAAGTAGACCATGGGACGGCGTTCCACCAGAGCGGGTAGTTTATGCTGTTGGCACAGAGGGATCACGCCTAGAGATTCCTGAAGGCCCACTTGGCAGGCTTATATCAGATTGTTGGGCAGAACCAAATGATCGTCCAAGCTGCGAAGAGATTCTCTCACGCTTGCTCGACTGCGAGTACTCACTTTCTTGA 2376 42.89 MEDQRDDVAAPSEQGPSNAPWWSSDFVDKFGSVSLGPRDDIVSEKEEIINSDQDVVLSPQRASQILWSTGMLCEPIPDGFYSVILDKRLKERFHSLPSLDELRALEAKGYRNDVILVETEKDKKISMLKQLILTLVKGLSSNPAAIIKKIAGLVSDFYKRPILESPAKAVAEESSYLFEDNKGIQLLGQIKFGSSRPRAILFKALADTVGLESRLMVGLPNDGAIGCVESYKHMSVTVVLNSVELVVDLMRFPGQLLPQSTKAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGYSERVDSDRKFEAASNAHGRPSLRNMMLRSSTTVDRKLSLSHSTPNIANAFWRRNRRKDIAEQRTASSSPEHPSFRARGRSMLSGDRKASRDFSDDVSTSRSDGASTSTSTSEARRIRRRSISITPEIGDDIVRAVRAMNETLKQNRLSREQGGRSFSHLSNERNSSSDVRRNDLAESQRAISLPSSPHEYRGQTSDRSEHATYVNDDLASKWTKVLESFSLNDKPLLPYPEWNIDYSELTVGIRIGIGFFGEVFRGIWNGTDVAIKVFLEQDLTPENIEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMEMGSLYSLIHLSGQKKKLNWRRRLKMLRDICRGLMCIHRTKIAHRDLKSANCLVNKHWNVKICDFGLSRILVEAPGRGSPSAGTPEWMAPELFRNEPFTEKCDIFSLGVIMWELCTLSRPWDGVPPERVVYAVGTEGSRLEIPEGPLGRLISDCWAEPNDRPSCEEILSRLLDCEYSLS 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41737629 41752591 + Sed0000624.4 Sed05g3196 715822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3196 791 Pfam Ethylene-responsive protein kinase Le-CTR1 60 256 - -
Sed05g3196 791 ProSiteProfiles Protein kinase domain profile. 535 790 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3196 791 Gene3D Transferase(Phosphotransferase) domain 1 614 790 - -
Sed05g3196 791 Pfam Protein tyrosine and serine/threonine kinase 537 783 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g3196 791 MobiDBLite consensus disorder prediction 275 295 - -
Sed05g3196 791 FunFam Serine/threonine-protein kinase isoform 1 526 613 - -
Sed05g3196 791 MobiDBLite consensus disorder prediction 355 413 - -
Sed05g3196 791 MobiDBLite consensus disorder prediction 1 23 - -
Sed05g3196 791 SUPERFAMILY Protein kinase-like (PK-like) 513 783 IPR011009 -
Sed05g3196 791 ProSitePatterns Serine/Threonine protein kinases active-site signature. 654 666 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g3196 791 MobiDBLite consensus disorder prediction 439 459 - -
Sed05g3196 791 MobiDBLite consensus disorder prediction 376 393 - -
Sed05g3196 791 CDD STKc_MAP3K-like 541 783 - -
Sed05g3196 791 ProSitePatterns Protein kinases ATP-binding region signature. 541 562 IPR017441 GO:0005524(InterPro)
Sed05g3196 791 Gene3D Phosphorylase Kinase; domain 1 528 613 - -
Sed05g3196 791 MobiDBLite consensus disorder prediction 439 495 - -
Sed05g3196 791 PANTHER SERINE-THREONINE PROTEIN KINASE 324 783 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed05g3196 791 SMART serkin_6 535 784 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3194 Sed-Chr5:41737629 Sed05g3196 Sed-Chr5:41737629 0.00E+00 dispersed
Sed05g3196 Sed-Chr5:41737629 Sed13g1856 Sed-Chr13:23515876 1.50E-71 dispersed
Sed05g3195 Sed-Chr5:41737629 Sed05g3196 Sed-Chr5:41737629 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79276 PF07714 PK_Tyr_Ser-Thr 6.70E-58 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3196 - - - 0.0