Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3223 ATGAAATTCGCAGATCAGAATCTGAACCAACACTCTGAACAGATATGCACGATTATCGAGGTCGATACAGTCGATCACCATCGCACTATTCCGTCGCCGATCGCAATGGAACCTCTCGGAGACTGCGAAAAGGACGGCGACGGCCTCTACACTCCTCCGCTCAACTTCTCCATGGTTGATAATGGCGTTTTCCGCTCCGGCTTCCCTGACTCTGCTAACTTATCCTTCCTCCAAACCCTAGGCCTCCGTTCCATCATATGTTTGTGTCCTGAGCCGTATCCGGAACACAACATGGAGTTTCTCAAGTCGAACGGGATTAGATTGTTTCAATTTGGAATTGAAAGCTATAAGGAGCCTTTCGTGAACATCCCAGATGATACGATTCGTGAAGCACTGAAAGTTGTCCTTGACGACAGGAATCATCCAATTCTCATACATTGCAAGAGAGGAAAGCATCGAACCGGTTGCCTCGTGGGATGCCTGAGAAAACTGCAGAGGTGGTGCCTCACGTCCGTGTTTGATGAGTACCAGAGGTTTGCAGCTGCAAAAGCAAGAATTTCAGATCAGAGGTTTATGGAATTGTTCGATATCTCTGACTTAAAGCATCTTCCCATGTCATTCTCATATTCAAAGAGGTGA 639 46.95 MKFADQNLNQHSEQICTIIEVDTVDHHRTIPSPIAMEPLGDCEKDGDGLYTPPLNFSMVDNGVFRSGFPDSANLSFLQTLGLRSIICLCPEPYPEHNMEFLKSNGIRLFQFGIESYKEPFVNIPDDTIREALKVVLDDRNHPILIHCKRGKHRTGCLVGCLRKLQRWCLTSVFDEYQRFAAAKARISDQRFMELFDISDLKHLPMSFSYSKR 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41876659 41880101 - Sed0018856.1 Sed05g3223 715849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3223 212 PANTHER TYROSINE-PROTEIN PHOSPHATASE 32 206 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Sed05g3223 212 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 118 158 IPR000387 GO:0016311(InterPro)
Sed05g3223 212 PRINTS Plant and fungal dual specificity phosphatase signature 87 100 IPR020428 GO:0016791(InterPro)
Sed05g3223 212 PRINTS Plant and fungal dual specificity phosphatase signature 106 120 IPR020428 GO:0016791(InterPro)
Sed05g3223 212 PRINTS Plant and fungal dual specificity phosphatase signature 50 67 IPR020428 GO:0016791(InterPro)
Sed05g3223 212 PRINTS Plant and fungal dual specificity phosphatase signature 123 137 IPR020428 GO:0016791(InterPro)
Sed05g3223 212 FunFam probable tyrosine-protein phosphatase At1g05000 49 199 - -
Sed05g3223 212 ProSitePatterns Tyrosine specific protein phosphatases active site. 145 155 IPR016130 GO:0016311(InterPro)
Sed05g3223 212 Gene3D Protein tyrosine phosphatase superfamily 50 199 IPR029021 -
Sed05g3223 212 ProSiteProfiles Dual specificity protein phosphatase domain profile. 55 206 IPR020422 GO:0006470(InterPro)
Sed05g3223 212 Pfam Tyrosine phosphatase family 52 202 IPR004861 -
Sed05g3223 212 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 50 197 IPR029021 -
Sed05g3223 212 CDD PFA-DSP_Siw14 49 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1893 Sed-Chr5:32353316 Sed05g3223 Sed-Chr5:41876659 7.60E-84 dispersed
Sed05g1894 Sed-Chr5:32353316 Sed05g3223 Sed-Chr5:41876659 1.10E-37 dispersed
Sed05g3223 Sed-Chr5:41876659 Sed08g1212 Sed-Chr8:25021100 4.40E-58 dispersed
Sed01g0708 Sed-Chr1:5188054 Sed05g3223 Sed-Chr5:41876659 2.30E-104 wgd
Sed04g3433 Sed-Chr4:44101419 Sed05g3223 Sed-Chr5:41876659 4.30E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3223 K18045 - csv:101222170 375.17