Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g3223 | ATGAAATTCGCAGATCAGAATCTGAACCAACACTCTGAACAGATATGCACGATTATCGAGGTCGATACAGTCGATCACCATCGCACTATTCCGTCGCCGATCGCAATGGAACCTCTCGGAGACTGCGAAAAGGACGGCGACGGCCTCTACACTCCTCCGCTCAACTTCTCCATGGTTGATAATGGCGTTTTCCGCTCCGGCTTCCCTGACTCTGCTAACTTATCCTTCCTCCAAACCCTAGGCCTCCGTTCCATCATATGTTTGTGTCCTGAGCCGTATCCGGAACACAACATGGAGTTTCTCAAGTCGAACGGGATTAGATTGTTTCAATTTGGAATTGAAAGCTATAAGGAGCCTTTCGTGAACATCCCAGATGATACGATTCGTGAAGCACTGAAAGTTGTCCTTGACGACAGGAATCATCCAATTCTCATACATTGCAAGAGAGGAAAGCATCGAACCGGTTGCCTCGTGGGATGCCTGAGAAAACTGCAGAGGTGGTGCCTCACGTCCGTGTTTGATGAGTACCAGAGGTTTGCAGCTGCAAAAGCAAGAATTTCAGATCAGAGGTTTATGGAATTGTTCGATATCTCTGACTTAAAGCATCTTCCCATGTCATTCTCATATTCAAAGAGGTGA | 639 | 46.95 | MKFADQNLNQHSEQICTIIEVDTVDHHRTIPSPIAMEPLGDCEKDGDGLYTPPLNFSMVDNGVFRSGFPDSANLSFLQTLGLRSIICLCPEPYPEHNMEFLKSNGIRLFQFGIESYKEPFVNIPDDTIREALKVVLDDRNHPILIHCKRGKHRTGCLVGCLRKLQRWCLTSVFDEYQRFAAAKARISDQRFMELFDISDLKHLPMSFSYSKR | 212 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 41876659 | 41880101 | - | Sed0018856.1 | Sed05g3223 | 715849 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g3223 | 212 | PANTHER | TYROSINE-PROTEIN PHOSPHATASE | 32 | 206 | - | GO:0005737(PANTHER)|GO:0016791(PANTHER) | |
Sed05g3223 | 212 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 118 | 158 | IPR000387 | GO:0016311(InterPro) | |
Sed05g3223 | 212 | PRINTS | Plant and fungal dual specificity phosphatase signature | 87 | 100 | IPR020428 | GO:0016791(InterPro) | |
Sed05g3223 | 212 | PRINTS | Plant and fungal dual specificity phosphatase signature | 106 | 120 | IPR020428 | GO:0016791(InterPro) | |
Sed05g3223 | 212 | PRINTS | Plant and fungal dual specificity phosphatase signature | 50 | 67 | IPR020428 | GO:0016791(InterPro) | |
Sed05g3223 | 212 | PRINTS | Plant and fungal dual specificity phosphatase signature | 123 | 137 | IPR020428 | GO:0016791(InterPro) | |
Sed05g3223 | 212 | FunFam | probable tyrosine-protein phosphatase At1g05000 | 49 | 199 | - | - | |
Sed05g3223 | 212 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 145 | 155 | IPR016130 | GO:0016311(InterPro) | |
Sed05g3223 | 212 | Gene3D | Protein tyrosine phosphatase superfamily | 50 | 199 | IPR029021 | - | |
Sed05g3223 | 212 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 55 | 206 | IPR020422 | GO:0006470(InterPro) | |
Sed05g3223 | 212 | Pfam | Tyrosine phosphatase family | 52 | 202 | IPR004861 | - | |
Sed05g3223 | 212 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 50 | 197 | IPR029021 | - | |
Sed05g3223 | 212 | CDD | PFA-DSP_Siw14 | 49 | 196 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1893 | Sed-Chr5:32353316 | Sed05g3223 | Sed-Chr5:41876659 | 7.60E-84 | dispersed | |
Sed05g1894 | Sed-Chr5:32353316 | Sed05g3223 | Sed-Chr5:41876659 | 1.10E-37 | dispersed | |
Sed05g3223 | Sed-Chr5:41876659 | Sed08g1212 | Sed-Chr8:25021100 | 4.40E-58 | dispersed | |
Sed01g0708 | Sed-Chr1:5188054 | Sed05g3223 | Sed-Chr5:41876659 | 2.30E-104 | wgd | |
Sed04g3433 | Sed-Chr4:44101419 | Sed05g3223 | Sed-Chr5:41876659 | 4.30E-78 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g3223 | K18045 | - | csv:101222170 | 375.17 |