Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3228 ATGCCAGATAATCTGCAAGTTCAGAGGAATGCTGTTCCTAACCAATCCCCTGATATCACCGAGGCGCTTTGGCGGTTCGAAATCAGTGATAATCAAGAGGGGGGTGATGCGGCCGAATCGAGCCCGTATCCCGATCGACCTGGCGAACCAGATTGCTTATATTATATGAGAACCGGCTCTTGTAGCTATGGAAATAATTGTCGTTTTAATCATCCTGTTTATGTTGCTCAGGGTGGTCTGTATAATGGGGAACTTCCAGAAAGAATTGGGCAACCTGACTGTGAGTATTTTCTTAAGACAGGGACCTGCAAGTATGGAGGATCGTGTAAGTATCATCATCCAAGAGATAGGCGTGGAGCTGGGCCTGTTACATTTAATATTTTAGGTCTTCCCATGCGGCAGGAAGAAAAATCATGCCCTTATTATTTGCGCACTGGATTGTGTAAATTTGGAGTTTCATGCAAGTTTAATCATCCTCAGCCATCACCAGTTGGAAATATGTTACCTCAAGTTAGACCTGGTGCTTTGAGTTCTGCAGGCACTCCATTCATGCCTTCATCTGGATTGCCATATGCTGGTGGCATTCCTGCTTGGTCGATGCCGCGAGTACAATATATGCCTGGTCCATGTGTACAAGGCCAACAATCTTATGTGCCTGTCTTGCTTTCTCCATCACAGGGTGCCATAGCTGCTCAAGACTGGAACACTTATGTGGGCAATGCCAGTTCGGTTCTTCCCAATCTTGGTTATAATTCTGTCAATTTGGAAGAGTCGTATTCTAATGGGCTGGCCTTATCATCAACAACTCCAATACTACCCGATCGACCTGATCAACCAGAATGCCGTTATTTTATGAACAATGGCACTTGCAAATATGGATCTGATTGCAAGTTTCATCATCCGAAACATAGAATCGCACAATCAGGAACGAATTCGCTTGGGCTTCCTTCAAGACCCGTAAGTGCTATTCTCTTAACCATACACAAGTTTTGCAAATACATTTATCCATCTTTACCATTTATAGTAGAAATGAAATCATGA 1041 43.71 MPDNLQVQRNAVPNQSPDITEALWRFEISDNQEGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGNNCRFNHPVYVAQGGLYNGELPERIGQPDCEYFLKTGTCKYGGSCKYHHPRDRRGAGPVTFNILGLPMRQEEKSCPYYLRTGLCKFGVSCKFNHPQPSPVGNMLPQVRPGALSSAGTPFMPSSGLPYAGGIPAWSMPRVQYMPGPCVQGQQSYVPVLLSPSQGAIAAQDWNTYVGNASSVLPNLGYNSVNLEESYSNGLALSSTTPILPDRPDQPECRYFMNNGTCKYGSDCKFHHPKHRIAQSGTNSLGLPSRPVSAILLTIHKFCKYIYPSLPFIVEMKS 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41922124 41925839 + Sed0003283.2 Sed05g3228 715854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3228 346 ProSiteProfiles Zinc finger C3H1-type profile. 275 303 IPR000571 GO:0046872(InterPro)
Sed05g3228 346 SUPERFAMILY CCCH zinc finger 279 303 IPR036855 GO:0046872(InterPro)
Sed05g3228 346 Gene3D - 44 123 - -
Sed05g3228 346 Gene3D - 267 334 - -
Sed05g3228 346 Gene3D - 124 170 - -
Sed05g3228 346 PANTHER PROTEIN PHOSPHATASE RELATED 15 324 IPR050974 GO:0003729(PANTHER)
Sed05g3228 346 ProSiteProfiles Zinc finger C3H1-type profile. 88 116 IPR000571 GO:0046872(InterPro)
Sed05g3228 346 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 115 IPR000571 GO:0046872(InterPro)
Sed05g3228 346 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 160 IPR000571 GO:0046872(InterPro)
Sed05g3228 346 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 47 72 IPR000571 GO:0046872(InterPro)
Sed05g3228 346 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 277 302 IPR000571 GO:0046872(InterPro)
Sed05g3228 346 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872(InterPro)
Sed05g3228 346 SMART c3hfinal6 88 115 IPR000571 GO:0046872(InterPro)
Sed05g3228 346 SMART c3hfinal6 135 160 IPR000571 GO:0046872(InterPro)
Sed05g3228 346 SMART c3hfinal6 46 73 IPR000571 GO:0046872(InterPro)
Sed05g3228 346 SMART c3hfinal6 275 302 IPR000571 GO:0046872(InterPro)
Sed05g3228 346 SUPERFAMILY CCCH zinc finger 93 117 IPR036855 GO:0046872(InterPro)
Sed05g3228 346 SUPERFAMILY CCCH zinc finger 51 73 IPR036855 GO:0046872(InterPro)
Sed05g3228 346 SUPERFAMILY CCCH zinc finger 132 161 IPR036855 GO:0046872(InterPro)
Sed05g3228 346 ProSiteProfiles Zinc finger C3H1-type profile. 133 161 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0709 Sed-Chr1:5213969 Sed05g3228 Sed-Chr5:41922124 1.80E-127 dispersed
Sed05g3228 Sed-Chr5:41922124 Sed12g0847 Sed-Chr12:5223649 8.90E-08 dispersed
Sed05g3227 Sed-Chr5:41922124 Sed05g3228 Sed-Chr5:41922124 5.80E-150 tandem
Sed05g3228 Sed-Chr5:41922124 Sed05g3229 Sed-Chr5:41922124 6.20E-102 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38699 PF00642 zf-CCCH 3.30E-10 CL0537 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3228 - - - 0.0