Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3258 ATGGATTATTCGAGCGGGATTAAGCTTCTGTACATGGCGAACGACGGCGACTCGGCTGGGATTACAGAGCTGCTGGATTCGGGTACCAACGTGAATTTCCGCAACACTGATGGCCGAACCGCATTGCACATTGCTGCTTGTCAGGGCGGGCCGGAGATCGTTGGGTTGCTACTCGAAAAAGGAGCCGAGGTCGACGTTCGGGATCAATGGGGCAGCACGCCTCTTGAAGATGCCCTACATAACAAGAATAAAGATGCAATCAAACTCTTAGTGGAACGCGGTGCAAGGCTACTGGTGCCTCCGATGCTTGTGCAAAATGCTCATGAGGTTCCAGAGTATGAGATCAACCCAAGTGAGCTTGATTTTTCTAATAGTGTGAACATTAGAAAAGGAACTTTCTGCATTGCATCATGGCGTGGAGTTGAAGTTGCCGTGAAGACATTAGGCGAGGAAGTTTTCACCAATAAGGATAAAGTGAAAGCATTCAGGAATGAACTTGCTTTACTTCAGAAGATACGCCATCCTAATGTTATCCTCTCGAGAGATTATCATAGTTTCTTAATAATAATAGTAGTAGATTCTATCATAACACAAAGTAGTCCAATGATGATTGTCACCGAGTTTTTGCCCCAGGGGGCCCTACTTGCATTCTTGAAACCTAAAGGTTCCTTGGAGCTAGTAAAAGTTTTGAATTTTGCTCTTGACATTGCTAGGGGAATGTATCATTTGCATCAGCATAAACCTGAAGCAATAATCCATCATAATCTCGAACCTTCAAACATACTGCTGGGTGATTCTGGCCAACTGAAAGTTGCAGGCTTTGGAGTTGGCAAACTTCTGAAATTTTCAAAGAGGGTCAAAGAAGACAGACCTGTGGCTGTAACATGTCAAGATACTTCATACAACTACTTAGGGCCCATCCATCAGCTTTTCTTTTTATTTGTACCCTTTTATGAAAGTTTCTGTTTCTCTTGTACAGGGCGATATGTTGCACCCGAGGTTTATAAAAATGAAGAGTATGATAAGAAAGCGGATATATTTTCATTTGCTTTGATCTTGCAAGAGATGATTGAAGGCAATCCACCTTTCCCAACAAAGCCAGAAAATGAAGTACCTAAAGCTTATATTGCTGGTGAACGCCCACCATTTATGGCTTCATATAAGCGTTACTATGCACATGGAATGGAACTAATCGAGGAATGTTGGGATGATAAGCCACATAAAAGACCCACGTTTGGGCAAATATTAAAAAGATTGGTGGATATTAACAATCGACATTATTATGCAATGAGGTCAAGGAGGTCGAAGAAAAAATTTCTCCCACCCCCTTATTCCAACTCCTTGCTCACTCCATCCCCTTCTCCAAACAACATTTCTCAAACAAAATTTTCCTACCATCCCTCCTTCAAACCACCTTTTTTCTTACAACCCCTCCTCCAAACAATCTTATCCAAACATGGAAATGGGAAATTCGTAATTGATACCGCGTATTCGTCGTCGCTATCACTTCCCACCCACCTCTTATTCATTCTCTTCTCTGTGCTGTTTCGTGGAACGCTCCATTCCATTGTTCTTCGTTCTCGTAAGCTCCATTTCTCTCTCTCTCACCTGAATTTGTTTGCGATTCTATTTGTAAAGATGGTGAAGTTTACAGCGGAGGAGCTTCGTCGGATTATGGACTTTAAGCACAACATTCGTAATATGTCTGTTATTGCGCATGTCGATCATGGAAAGTCGACACTTACAGACTCCCTGGTGGCTGCTGCCGGTATCATTGCTCAGGAAGTAGCTGGTGATGTGCGGATGACAGATACTCGTGCAGATGAGGCAGAACGGGGTATCACAATTAAATCTACTGGCATCTCCCTCTACTATGAGATGTCTGATGATTCATTGAAAAATTATAAGGGAGAAAGAAATGGAAACGAGTATCTTATCAATCTTATTGACTCCCCTGGGCACGTTGATTTCTCATCTGAGGTTACAGCTGCTTTGCGGATTACTGATGGTGCCCTTGTTGTGGTAGATTGTATCGAAGGTGTTTGTGTCCAAACAGAGACGGTGCTCCGTCAGGCTTTGGGAGAGAGGATTAGGCCTGTCTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAACTTCAAGTGGATGGAGAGGAGGCTTACCAAACATTTTCAAGGGTTATAGAGAATGCTAATGTGATTATGGCCACTTATGAGGATCCTCTTCTTGGAGATGTGCAAGTGTATCCCGAGAAAGGAACAGTTGCTTTCTCTGCCGGTTTGCATGGTTGGGCCTTTACCTTGACTAACTTTGCCAAGATGTATGCCTCCAAGTTTGGAGTAGATGAGTCAAAGATGATGGAGAGACTTTGGGGTGAGAACTTCTTCGATCCTGCCACCAAGAAGTGGACCACCAAGAACACTGGCTCTGCAACATGCAAGCGTGGGTTTGTTCAGTTCTGCTACGAACCTATCAAGCAGATCATTGCAACTTGCATGAACGACCAGAAAGATAAGCTGTGGCCTATGTTACAGAAGCTTGGAGTTGTCATGAAGTCTGATGAAAAGGAACTGATGAGCAAAGCATTGATGAAGCGAGTCATGCAAACATGGCTCCCGGCAAGCACTGCTCTGTTGGAAATGATGATATTTCATCTTCCATCCCCTTCCACAGCTCAAAAGATGATTCCTGCATCAGACAAGGGCAGGTTCTTTGCCTTTGGTCGTGTCTTTTCTGGGAAAGTTTCAACTGGTATGAAAGTTAGAATCATGGGTCCAAACTATGTTCCTGGAGAGAAGAAAGACTTGTACGTGAAGAGTGTCCAGAGAACTGTAATTTGGATGGGAAAGAGACAAGAAACGGTGGAGGATGTGCCTTGTGGTAACACTGTTGCCTTGGTTGGGCTTGATCAATACATCACCAAGAATGCCACCCTGACAAACGAGAAGGAAGTAGATGCTCATCCAATTCGAGCCATGAAGTTTTCTGTGTCCCCTGTTGTTCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTTGTTGAAGGCCTTAAACGTCTGGCGAAGTCTGACCCTATGGTTGTGTGTACCATGGAGGAATCTGGTGAGCACATTGTTGCCGGCGCTGGAGAACTTCACCTTGAGATCTGTCTAAAGGATTTGCAAGACGACTTCATGGGTGGGGCTGAGATCATAAAATCTGATCCTGTCGTGTCTTTCCGTGAAACTGTCCTTGAGAAGTCATGCCGCATTGTGATGAGTAAATCTCCAAACAAACACAATCGTCTGTACATGGAAGCACGGCCCTTGGAAGAAGGACTGGCTGAGGCTATTGACGACGGCCGCATTGGACCACGAGATGATCCAAAAGTTAGGTCCAAGATTTTATCAGAGGAGTTTGGTTGGGATAAAGATCTTGCTAAGAAGATTTGGTGCTTTGGTCCTGAGACTACTGGGCCTAATATGGTAGTTGATATGTGTAAGGGAGTTCAATACCTGAATGAAATCAAGGATTCTGTGGTTGCTGGTTTCCAATGGGCGTCGAAAGAAGGTGCATTGGCTGAAGAAAACATGAGAGGCATCTGTTTTGAAGTTTGTGATGTTGTCCTTCACTCTGATGCCATCCACAGAGGAGGCGGTCAAGTCATTCCAACCGCCAGGAGGGTAATCTATGCTTCTCAGCTGACCGCTAAACCAAGGCTTCTCGAGCCAGTGTACCTGGTGGAGATTCAGGCTCCCGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAACCAGAAGCGTGGACACGTCTTCGAGGAGATGCAGAGGCCCGGTACCCCACTTTACAACATCAAGGCATATCTTCCCGTCGTCGAGTCTTTTGGATTCTCGAGCACGTTGAGGGCTTCAACTTCCGGGCAGGCGTTCCCACAATGTGTTTTTGACCATTGGGACATGATGTCATCGGATCCAATGGAATCCGGTTCCCAGGCTGCACAGCTTGTTGCAGACATCCGGAAGAGGAAGGGTTTGAAGGAGCAAATGACTCCATTGTCCGACTTTGAGGACAAGCTGTAA 4068 45.11 MDYSSGIKLLYMANDGDSAGITELLDSGTNVNFRNTDGRTALHIAACQGGPEIVGLLLEKGAEVDVRDQWGSTPLEDALHNKNKDAIKLLVERGARLLVPPMLVQNAHEVPEYEINPSELDFSNSVNIRKGTFCIASWRGVEVAVKTLGEEVFTNKDKVKAFRNELALLQKIRHPNVILSRDYHSFLIIIVVDSIITQSSPMMIVTEFLPQGALLAFLKPKGSLELVKVLNFALDIARGMYHLHQHKPEAIIHHNLEPSNILLGDSGQLKVAGFGVGKLLKFSKRVKEDRPVAVTCQDTSYNYLGPIHQLFFLFVPFYESFCFSCTGRYVAPEVYKNEEYDKKADIFSFALILQEMIEGNPPFPTKPENEVPKAYIAGERPPFMASYKRYYAHGMELIEECWDDKPHKRPTFGQILKRLVDINNRHYYAMRSRRSKKKFLPPPYSNSLLTPSPSPNNISQTKFSYHPSFKPPFFLQPLLQTILSKHGNGKFVIDTAYSSSLSLPTHLLFILFSVLFRGTLHSIVLRSRKLHFSLSHLNLFAILFVKMVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMSDDSLKNYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSDEKELMSKALMKRVMQTWLPASTALLEMMIFHLPSPSTAQKMIPASDKGRFFAFGRVFSGKVSTGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKRQETVEDVPCGNTVALVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRIVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHSDAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRASTSGQAFPQCVFDHWDMMSSDPMESGSQAAQLVADIRKRKGLKEQMTPLSDFEDKL 1355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42063261 42083945 + Sed0027465.1 Sed05g3258 715884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3258 1355 Pfam Elongation factor Tu domain 2 906 974 IPR004161 GO:0005525(InterPro)
Sed05g3258 1355 FunFam Translation elongation factor 2 998 1075 - -
Sed05g3258 1355 Pfam Elongation Factor G, domain III 999 1061 IPR041095 -
Sed05g3258 1355 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 604 619 IPR031157 -
Sed05g3258 1355 Gene3D - 3 103 IPR036770 -
Sed05g3258 1355 ProSiteProfiles Ankyrin repeat profile. 70 97 IPR002110 GO:0005515(InterPro)
Sed05g3258 1355 Gene3D Elongation Factor G (Translational Gtpase), domain 3 998 1075 - -
Sed05g3258 1355 CDD EF2_snRNP_III 999 1071 - -
Sed05g3258 1355 Pfam Protein kinase domain 134 417 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3258 1355 SUPERFAMILY EF-G C-terminal domain-like 996 1072 IPR035647 -
Sed05g3258 1355 FunFam Translation elongation factor 2 1235 1355 - -
Sed05g3258 1355 Gene3D - 1235 1355 - -
Sed05g3258 1355 CDD eEF2_snRNP_like_C 1239 1317 - -
Sed05g3258 1355 ProSiteProfiles Ankyrin repeat region circular profile. 37 68 - -
Sed05g3258 1355 Gene3D - 549 783 IPR027417 -
Sed05g3258 1355 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 563 890 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed05g3258 1355 SUPERFAMILY Protein kinase-like (PK-like) 137 444 IPR011009 -
Sed05g3258 1355 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 893 1354 - GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0006414(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER)
Sed05g3258 1355 FunFam serine/threonine-protein kinase STY46-like 115 210 - -
Sed05g3258 1355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 550 887 IPR027417 -
Sed05g3258 1355 ProSiteProfiles Ankyrin repeat profile. 37 69 IPR002110 GO:0005515(InterPro)
Sed05g3258 1355 Gene3D Phosphorylase Kinase; domain 1 115 209 - -
Sed05g3258 1355 FunFam Translation elongation factor 2 1081 1234 - -
Sed05g3258 1355 SUPERFAMILY Translation proteins 892 988 IPR009000 -
Sed05g3258 1355 SUPERFAMILY Ribosomal protein S5 domain 2-like 1074 1238 IPR020568 -
Sed05g3258 1355 Gene3D Translation factors 884 996 - -
Sed05g3258 1355 Pfam Elongation factor G, domain IV 1122 1234 IPR005517 GO:0005525(InterPro)
Sed05g3258 1355 SMART EFG_IV_2 1118 1234 IPR005517 GO:0005525(InterPro)
Sed05g3258 1355 FunFam Translation elongation factor 2 890 996 - -
Sed05g3258 1355 PRINTS GTP-binding elongation factor signature 647 657 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed05g3258 1355 PRINTS GTP-binding elongation factor signature 567 580 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed05g3258 1355 PRINTS GTP-binding elongation factor signature 663 674 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed05g3258 1355 PRINTS GTP-binding elongation factor signature 611 619 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed05g3258 1355 PRINTS GTP-binding elongation factor signature 699 708 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed05g3258 1355 Gene3D Transferase(Phosphotransferase) domain 1 210 444 - -
Sed05g3258 1355 Pfam Ankyrin repeats (3 copies) 9 96 IPR002110 GO:0005515(InterPro)
Sed05g3258 1355 Pfam Elongation factor Tu GTP binding domain 564 767 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed05g3258 1355 CDD aeEF2_snRNP_like_IV 1071 1243 - -
Sed05g3258 1355 FunFam Translation elongation factor 2 549 783 - -
Sed05g3258 1355 SMART ANK_2a 5 33 IPR002110 GO:0005515(InterPro)
Sed05g3258 1355 SMART ANK_2a 37 66 IPR002110 GO:0005515(InterPro)
Sed05g3258 1355 SMART ANK_2a 70 99 IPR002110 GO:0005515(InterPro)
Sed05g3258 1355 SMART EFG_C_a 1236 1325 IPR000640 -
Sed05g3258 1355 Gene3D - 1081 1234 IPR014721 -
Sed05g3258 1355 NCBIfam small GTP-binding protein domain 566 722 IPR005225 GO:0005525(InterPro)
Sed05g3258 1355 CDD EF2 566 776 - -
Sed05g3258 1355 CDD EF2_II 894 982 - -
Sed05g3258 1355 Pfam Elongation factor G C-terminus 1236 1323 IPR000640 -
Sed05g3258 1355 ProSiteProfiles Protein kinase domain profile. 111 429 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3258 1355 SUPERFAMILY EF-G C-terminal domain-like 1239 1349 IPR035647 -
Sed05g3258 1355 SUPERFAMILY Ankyrin repeat 9 97 IPR036770 -
Sed05g3258 1355 ProSiteProfiles Ankyrin repeat region circular profile. 70 97 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0881 Sed-Chr5:7055058 Sed05g3258 Sed-Chr5:42063261 3.10E-40 dispersed
Sed05g3258 Sed-Chr5:42063261 Sed08g1552 Sed-Chr8:30614946 3.60E-153 dispersed
Sed05g3257 Sed-Chr5:42056872 Sed05g3258 Sed-Chr5:42063261 0.00E+00 tandem
Sed05g3287 Sed-Chr5:42234621 Sed05g3258 Sed-Chr5:42063261 0.00E+00 transposed
Sed12g1638 Sed-Chr12:27519340 Sed05g3258 Sed-Chr5:42063261 8.20E-110 transposed
Sed01g0721 Sed-Chr1:5294382 Sed05g3258 Sed-Chr5:42063261 2.40E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79277 PF00009 GTP_EFTU 5.10E-65 CL0023 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3258 K03234 - cit:102616841 1564.67