Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g3258 | ATGGATTATTCGAGCGGGATTAAGCTTCTGTACATGGCGAACGACGGCGACTCGGCTGGGATTACAGAGCTGCTGGATTCGGGTACCAACGTGAATTTCCGCAACACTGATGGCCGAACCGCATTGCACATTGCTGCTTGTCAGGGCGGGCCGGAGATCGTTGGGTTGCTACTCGAAAAAGGAGCCGAGGTCGACGTTCGGGATCAATGGGGCAGCACGCCTCTTGAAGATGCCCTACATAACAAGAATAAAGATGCAATCAAACTCTTAGTGGAACGCGGTGCAAGGCTACTGGTGCCTCCGATGCTTGTGCAAAATGCTCATGAGGTTCCAGAGTATGAGATCAACCCAAGTGAGCTTGATTTTTCTAATAGTGTGAACATTAGAAAAGGAACTTTCTGCATTGCATCATGGCGTGGAGTTGAAGTTGCCGTGAAGACATTAGGCGAGGAAGTTTTCACCAATAAGGATAAAGTGAAAGCATTCAGGAATGAACTTGCTTTACTTCAGAAGATACGCCATCCTAATGTTATCCTCTCGAGAGATTATCATAGTTTCTTAATAATAATAGTAGTAGATTCTATCATAACACAAAGTAGTCCAATGATGATTGTCACCGAGTTTTTGCCCCAGGGGGCCCTACTTGCATTCTTGAAACCTAAAGGTTCCTTGGAGCTAGTAAAAGTTTTGAATTTTGCTCTTGACATTGCTAGGGGAATGTATCATTTGCATCAGCATAAACCTGAAGCAATAATCCATCATAATCTCGAACCTTCAAACATACTGCTGGGTGATTCTGGCCAACTGAAAGTTGCAGGCTTTGGAGTTGGCAAACTTCTGAAATTTTCAAAGAGGGTCAAAGAAGACAGACCTGTGGCTGTAACATGTCAAGATACTTCATACAACTACTTAGGGCCCATCCATCAGCTTTTCTTTTTATTTGTACCCTTTTATGAAAGTTTCTGTTTCTCTTGTACAGGGCGATATGTTGCACCCGAGGTTTATAAAAATGAAGAGTATGATAAGAAAGCGGATATATTTTCATTTGCTTTGATCTTGCAAGAGATGATTGAAGGCAATCCACCTTTCCCAACAAAGCCAGAAAATGAAGTACCTAAAGCTTATATTGCTGGTGAACGCCCACCATTTATGGCTTCATATAAGCGTTACTATGCACATGGAATGGAACTAATCGAGGAATGTTGGGATGATAAGCCACATAAAAGACCCACGTTTGGGCAAATATTAAAAAGATTGGTGGATATTAACAATCGACATTATTATGCAATGAGGTCAAGGAGGTCGAAGAAAAAATTTCTCCCACCCCCTTATTCCAACTCCTTGCTCACTCCATCCCCTTCTCCAAACAACATTTCTCAAACAAAATTTTCCTACCATCCCTCCTTCAAACCACCTTTTTTCTTACAACCCCTCCTCCAAACAATCTTATCCAAACATGGAAATGGGAAATTCGTAATTGATACCGCGTATTCGTCGTCGCTATCACTTCCCACCCACCTCTTATTCATTCTCTTCTCTGTGCTGTTTCGTGGAACGCTCCATTCCATTGTTCTTCGTTCTCGTAAGCTCCATTTCTCTCTCTCTCACCTGAATTTGTTTGCGATTCTATTTGTAAAGATGGTGAAGTTTACAGCGGAGGAGCTTCGTCGGATTATGGACTTTAAGCACAACATTCGTAATATGTCTGTTATTGCGCATGTCGATCATGGAAAGTCGACACTTACAGACTCCCTGGTGGCTGCTGCCGGTATCATTGCTCAGGAAGTAGCTGGTGATGTGCGGATGACAGATACTCGTGCAGATGAGGCAGAACGGGGTATCACAATTAAATCTACTGGCATCTCCCTCTACTATGAGATGTCTGATGATTCATTGAAAAATTATAAGGGAGAAAGAAATGGAAACGAGTATCTTATCAATCTTATTGACTCCCCTGGGCACGTTGATTTCTCATCTGAGGTTACAGCTGCTTTGCGGATTACTGATGGTGCCCTTGTTGTGGTAGATTGTATCGAAGGTGTTTGTGTCCAAACAGAGACGGTGCTCCGTCAGGCTTTGGGAGAGAGGATTAGGCCTGTCTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAACTTCAAGTGGATGGAGAGGAGGCTTACCAAACATTTTCAAGGGTTATAGAGAATGCTAATGTGATTATGGCCACTTATGAGGATCCTCTTCTTGGAGATGTGCAAGTGTATCCCGAGAAAGGAACAGTTGCTTTCTCTGCCGGTTTGCATGGTTGGGCCTTTACCTTGACTAACTTTGCCAAGATGTATGCCTCCAAGTTTGGAGTAGATGAGTCAAAGATGATGGAGAGACTTTGGGGTGAGAACTTCTTCGATCCTGCCACCAAGAAGTGGACCACCAAGAACACTGGCTCTGCAACATGCAAGCGTGGGTTTGTTCAGTTCTGCTACGAACCTATCAAGCAGATCATTGCAACTTGCATGAACGACCAGAAAGATAAGCTGTGGCCTATGTTACAGAAGCTTGGAGTTGTCATGAAGTCTGATGAAAAGGAACTGATGAGCAAAGCATTGATGAAGCGAGTCATGCAAACATGGCTCCCGGCAAGCACTGCTCTGTTGGAAATGATGATATTTCATCTTCCATCCCCTTCCACAGCTCAAAAGATGATTCCTGCATCAGACAAGGGCAGGTTCTTTGCCTTTGGTCGTGTCTTTTCTGGGAAAGTTTCAACTGGTATGAAAGTTAGAATCATGGGTCCAAACTATGTTCCTGGAGAGAAGAAAGACTTGTACGTGAAGAGTGTCCAGAGAACTGTAATTTGGATGGGAAAGAGACAAGAAACGGTGGAGGATGTGCCTTGTGGTAACACTGTTGCCTTGGTTGGGCTTGATCAATACATCACCAAGAATGCCACCCTGACAAACGAGAAGGAAGTAGATGCTCATCCAATTCGAGCCATGAAGTTTTCTGTGTCCCCTGTTGTTCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTTGTTGAAGGCCTTAAACGTCTGGCGAAGTCTGACCCTATGGTTGTGTGTACCATGGAGGAATCTGGTGAGCACATTGTTGCCGGCGCTGGAGAACTTCACCTTGAGATCTGTCTAAAGGATTTGCAAGACGACTTCATGGGTGGGGCTGAGATCATAAAATCTGATCCTGTCGTGTCTTTCCGTGAAACTGTCCTTGAGAAGTCATGCCGCATTGTGATGAGTAAATCTCCAAACAAACACAATCGTCTGTACATGGAAGCACGGCCCTTGGAAGAAGGACTGGCTGAGGCTATTGACGACGGCCGCATTGGACCACGAGATGATCCAAAAGTTAGGTCCAAGATTTTATCAGAGGAGTTTGGTTGGGATAAAGATCTTGCTAAGAAGATTTGGTGCTTTGGTCCTGAGACTACTGGGCCTAATATGGTAGTTGATATGTGTAAGGGAGTTCAATACCTGAATGAAATCAAGGATTCTGTGGTTGCTGGTTTCCAATGGGCGTCGAAAGAAGGTGCATTGGCTGAAGAAAACATGAGAGGCATCTGTTTTGAAGTTTGTGATGTTGTCCTTCACTCTGATGCCATCCACAGAGGAGGCGGTCAAGTCATTCCAACCGCCAGGAGGGTAATCTATGCTTCTCAGCTGACCGCTAAACCAAGGCTTCTCGAGCCAGTGTACCTGGTGGAGATTCAGGCTCCCGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAACCAGAAGCGTGGACACGTCTTCGAGGAGATGCAGAGGCCCGGTACCCCACTTTACAACATCAAGGCATATCTTCCCGTCGTCGAGTCTTTTGGATTCTCGAGCACGTTGAGGGCTTCAACTTCCGGGCAGGCGTTCCCACAATGTGTTTTTGACCATTGGGACATGATGTCATCGGATCCAATGGAATCCGGTTCCCAGGCTGCACAGCTTGTTGCAGACATCCGGAAGAGGAAGGGTTTGAAGGAGCAAATGACTCCATTGTCCGACTTTGAGGACAAGCTGTAA | 4068 | 45.11 | MDYSSGIKLLYMANDGDSAGITELLDSGTNVNFRNTDGRTALHIAACQGGPEIVGLLLEKGAEVDVRDQWGSTPLEDALHNKNKDAIKLLVERGARLLVPPMLVQNAHEVPEYEINPSELDFSNSVNIRKGTFCIASWRGVEVAVKTLGEEVFTNKDKVKAFRNELALLQKIRHPNVILSRDYHSFLIIIVVDSIITQSSPMMIVTEFLPQGALLAFLKPKGSLELVKVLNFALDIARGMYHLHQHKPEAIIHHNLEPSNILLGDSGQLKVAGFGVGKLLKFSKRVKEDRPVAVTCQDTSYNYLGPIHQLFFLFVPFYESFCFSCTGRYVAPEVYKNEEYDKKADIFSFALILQEMIEGNPPFPTKPENEVPKAYIAGERPPFMASYKRYYAHGMELIEECWDDKPHKRPTFGQILKRLVDINNRHYYAMRSRRSKKKFLPPPYSNSLLTPSPSPNNISQTKFSYHPSFKPPFFLQPLLQTILSKHGNGKFVIDTAYSSSLSLPTHLLFILFSVLFRGTLHSIVLRSRKLHFSLSHLNLFAILFVKMVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMSDDSLKNYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSDEKELMSKALMKRVMQTWLPASTALLEMMIFHLPSPSTAQKMIPASDKGRFFAFGRVFSGKVSTGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKRQETVEDVPCGNTVALVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRIVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHSDAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRASTSGQAFPQCVFDHWDMMSSDPMESGSQAAQLVADIRKRKGLKEQMTPLSDFEDKL | 1355 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 42063261 | 42083945 | + | Sed0027465.1 | Sed05g3258 | 715884 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g3258 | 1355 | Pfam | Elongation factor Tu domain 2 | 906 | 974 | IPR004161 | GO:0005525(InterPro) | |
Sed05g3258 | 1355 | FunFam | Translation elongation factor 2 | 998 | 1075 | - | - | |
Sed05g3258 | 1355 | Pfam | Elongation Factor G, domain III | 999 | 1061 | IPR041095 | - | |
Sed05g3258 | 1355 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 604 | 619 | IPR031157 | - | |
Sed05g3258 | 1355 | Gene3D | - | 3 | 103 | IPR036770 | - | |
Sed05g3258 | 1355 | ProSiteProfiles | Ankyrin repeat profile. | 70 | 97 | IPR002110 | GO:0005515(InterPro) | |
Sed05g3258 | 1355 | Gene3D | Elongation Factor G (Translational Gtpase), domain 3 | 998 | 1075 | - | - | |
Sed05g3258 | 1355 | CDD | EF2_snRNP_III | 999 | 1071 | - | - | |
Sed05g3258 | 1355 | Pfam | Protein kinase domain | 134 | 417 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g3258 | 1355 | SUPERFAMILY | EF-G C-terminal domain-like | 996 | 1072 | IPR035647 | - | |
Sed05g3258 | 1355 | FunFam | Translation elongation factor 2 | 1235 | 1355 | - | - | |
Sed05g3258 | 1355 | Gene3D | - | 1235 | 1355 | - | - | |
Sed05g3258 | 1355 | CDD | eEF2_snRNP_like_C | 1239 | 1317 | - | - | |
Sed05g3258 | 1355 | ProSiteProfiles | Ankyrin repeat region circular profile. | 37 | 68 | - | - | |
Sed05g3258 | 1355 | Gene3D | - | 549 | 783 | IPR027417 | - | |
Sed05g3258 | 1355 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 563 | 890 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed05g3258 | 1355 | SUPERFAMILY | Protein kinase-like (PK-like) | 137 | 444 | IPR011009 | - | |
Sed05g3258 | 1355 | PANTHER | TRANSLATION ELONGATION FACTOR-RELATED | 893 | 1354 | - | GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0006414(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER) | |
Sed05g3258 | 1355 | FunFam | serine/threonine-protein kinase STY46-like | 115 | 210 | - | - | |
Sed05g3258 | 1355 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 550 | 887 | IPR027417 | - | |
Sed05g3258 | 1355 | ProSiteProfiles | Ankyrin repeat profile. | 37 | 69 | IPR002110 | GO:0005515(InterPro) | |
Sed05g3258 | 1355 | Gene3D | Phosphorylase Kinase; domain 1 | 115 | 209 | - | - | |
Sed05g3258 | 1355 | FunFam | Translation elongation factor 2 | 1081 | 1234 | - | - | |
Sed05g3258 | 1355 | SUPERFAMILY | Translation proteins | 892 | 988 | IPR009000 | - | |
Sed05g3258 | 1355 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 1074 | 1238 | IPR020568 | - | |
Sed05g3258 | 1355 | Gene3D | Translation factors | 884 | 996 | - | - | |
Sed05g3258 | 1355 | Pfam | Elongation factor G, domain IV | 1122 | 1234 | IPR005517 | GO:0005525(InterPro) | |
Sed05g3258 | 1355 | SMART | EFG_IV_2 | 1118 | 1234 | IPR005517 | GO:0005525(InterPro) | |
Sed05g3258 | 1355 | FunFam | Translation elongation factor 2 | 890 | 996 | - | - | |
Sed05g3258 | 1355 | PRINTS | GTP-binding elongation factor signature | 647 | 657 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed05g3258 | 1355 | PRINTS | GTP-binding elongation factor signature | 567 | 580 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed05g3258 | 1355 | PRINTS | GTP-binding elongation factor signature | 663 | 674 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed05g3258 | 1355 | PRINTS | GTP-binding elongation factor signature | 611 | 619 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed05g3258 | 1355 | PRINTS | GTP-binding elongation factor signature | 699 | 708 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed05g3258 | 1355 | Gene3D | Transferase(Phosphotransferase) domain 1 | 210 | 444 | - | - | |
Sed05g3258 | 1355 | Pfam | Ankyrin repeats (3 copies) | 9 | 96 | IPR002110 | GO:0005515(InterPro) | |
Sed05g3258 | 1355 | Pfam | Elongation factor Tu GTP binding domain | 564 | 767 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed05g3258 | 1355 | CDD | aeEF2_snRNP_like_IV | 1071 | 1243 | - | - | |
Sed05g3258 | 1355 | FunFam | Translation elongation factor 2 | 549 | 783 | - | - | |
Sed05g3258 | 1355 | SMART | ANK_2a | 5 | 33 | IPR002110 | GO:0005515(InterPro) | |
Sed05g3258 | 1355 | SMART | ANK_2a | 37 | 66 | IPR002110 | GO:0005515(InterPro) | |
Sed05g3258 | 1355 | SMART | ANK_2a | 70 | 99 | IPR002110 | GO:0005515(InterPro) | |
Sed05g3258 | 1355 | SMART | EFG_C_a | 1236 | 1325 | IPR000640 | - | |
Sed05g3258 | 1355 | Gene3D | - | 1081 | 1234 | IPR014721 | - | |
Sed05g3258 | 1355 | NCBIfam | small GTP-binding protein domain | 566 | 722 | IPR005225 | GO:0005525(InterPro) | |
Sed05g3258 | 1355 | CDD | EF2 | 566 | 776 | - | - | |
Sed05g3258 | 1355 | CDD | EF2_II | 894 | 982 | - | - | |
Sed05g3258 | 1355 | Pfam | Elongation factor G C-terminus | 1236 | 1323 | IPR000640 | - | |
Sed05g3258 | 1355 | ProSiteProfiles | Protein kinase domain profile. | 111 | 429 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g3258 | 1355 | SUPERFAMILY | EF-G C-terminal domain-like | 1239 | 1349 | IPR035647 | - | |
Sed05g3258 | 1355 | SUPERFAMILY | Ankyrin repeat | 9 | 97 | IPR036770 | - | |
Sed05g3258 | 1355 | ProSiteProfiles | Ankyrin repeat region circular profile. | 70 | 97 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g0881 | Sed-Chr5:7055058 | Sed05g3258 | Sed-Chr5:42063261 | 3.10E-40 | dispersed | |
Sed05g3258 | Sed-Chr5:42063261 | Sed08g1552 | Sed-Chr8:30614946 | 3.60E-153 | dispersed | |
Sed05g3257 | Sed-Chr5:42056872 | Sed05g3258 | Sed-Chr5:42063261 | 0.00E+00 | tandem | |
Sed05g3287 | Sed-Chr5:42234621 | Sed05g3258 | Sed-Chr5:42063261 | 0.00E+00 | transposed | |
Sed12g1638 | Sed-Chr12:27519340 | Sed05g3258 | Sed-Chr5:42063261 | 8.20E-110 | transposed | |
Sed01g0721 | Sed-Chr1:5294382 | Sed05g3258 | Sed-Chr5:42063261 | 2.40E-138 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79277 | PF00009 | GTP_EFTU | 5.10E-65 | CL0023 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g3258 | K03234 | - | cit:102616841 | 1564.67 |