Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3262 ATGGGAAGAGGTAAGATTGAAATTAAACGAATTGAAAATACTACAAATCGCCAAGTCACCTTTTGCAAGAGAAGAAATGGATTGCTCAAAAAAGCTTACGAATTGTCGGTTCTTTGCGACGCCGAAGTCGCCCTCGTCGTCTTCTCGACTCGTGGTCGTCTCTACGAATATGCCAATAACAGTGTGAGAGGAACGATTGAAAGGTACAAGAAAGCATTTGCTGACTCTTCCAATTCCGGATTATCAGTTGCGGAAGCTAATGTACAGTTTTACCAGCAAGAAGCCTCCAAGCTAAAGAGACAAATCCGAGAAATTCAGAACTCAAACAGGCATATTGTGGGAGAAGCACTTAGCACATTGCCATTAAAGGACCTCAAGAGTTTAGAGGGCAGATTGGAGAGAGGAATCAGCAAAGTTAGGGCTAAAAAGAATGAAACCTTATGTGCAGAGATGGCATTCATGCAAAAAAGGGAAATGGACCTTCAAAACCACAACAACTATCTGCGAGAACAGATTGCAGAACATGAAAGGATACAGCAACAGCAGCAGCAACAACTACAACAAACAAACATGATGCAAAGGACAACCTACGAGACGACACGAGCTGACCAATACGACGAGACTAGAAGTTACGGGACGGTGGGGCTAATGGATTCGGACACCCATTACCGCCCATCAAGACCATCTCACTGCACTTCAGCTTGTTTAGTGTATAAACCTTAA 723 43.43 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRGTIERYKKAFADSSNSGLSVAEANVQFYQQEASKLKRQIREIQNSNRHIVGEALSTLPLKDLKSLEGRLERGISKVRAKKNETLCAEMAFMQKREMDLQNHNNYLREQIAEHERIQQQQQQQLQQTNMMQRTTYETTRADQYDETRSYGTVGLMDSDTHYRPSRPSHCTSACLVYKP 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42093222 42100697 + Sed0014035.1 Sed05g3262 715888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3262 240 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g3262 240 Coils Coil 81 108 - -
Sed05g3262 240 Coils Coil 161 188 - -
Sed05g3262 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g3262 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g3262 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g3262 240 Pfam K-box region 87 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed05g3262 240 FunFam agamous-like MADS-box protein AGL11 13 97 - -
Sed05g3262 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g3262 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g3262 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 190 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed05g3262 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g3262 240 Gene3D - 14 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g3262 240 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed05g3262 240 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g3262 240 Coils Coil 125 145 - -
Sed05g3262 240 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3262 Sed-Chr5:42093222 Sed10g0194 Sed-Chr10:1137633 1.30E-69 dispersed
Sed05g3262 Sed-Chr5:42093222 Sed05g3263 Sed-Chr5:42093353 1.60E-125 tandem
Sed01g0724 Sed-Chr1:5319148 Sed05g3262 Sed-Chr5:42093222 1.30E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38702 PF01486 K-box 3.30E-24 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3262 K09264 - csv:101217987 370.933