Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3269 ATGCAGCAAGATCAACCCAAAAAGAATGCAACCGAAGCGGAGTTCTTCTCTGATTATGGTGATGCCAGCAGATACAAAATTCAGGAAGTAATCGGGAAAGGAAGCTATGGTGTGGTGTGTTCTGCAATTGATACTCGATCTGGTGACAAGGTTGCTATAAAGAAGATACACAATATTTTTGAGCATACATCTGATGCAGTTCGAATTCTACGCGAGATAAAGCTGCTTCGACTTCTTCGCCATCCTGATATTGTTGAAATTAAACACATTATGCTGCCACCTTCAAGGAGAGACTTCAAAGACATCTATGTTGTTTTTGAGCTCATGGAATCAGATCTCCACCAAGTTATTAAAGCAAATGATGATCTAACTCGAGAACACTATCAGTTTTTCCTTTACCAACTTCTTCGTGCATTAAAGTATATTCATACAGCTAGTGTCTACCACCGAGATTTAAAACCAAAGAATATATTAGCAAATGCAAATTGTAAACTTAAAATTTGTGATTTTGGGTTGGCCAGAGTTGCGTTCAGTGACACACCAACAACAATTTTCTGGACGGATTATGTTGCTACTAGATGGTATCGAGCTCCAGAGCTATGCGGTTCATTTTACTCCAAGTATACAGCTGCAATTGATATATGGGGTATAGGCTGCATATTTGCCGAAGTATTAAGTGGGAAGCCACTTTTTCCCGGTAAAAATGTTGTTCACCAGCTTGATTTGATGACGGATCTCCTTGGAACTCCTTCATTAGATACAATCTCCAGGGTTCGTAATGACAAGGCTAGAAGATATTTAACTACTATGAGGAAAAAGCAGCCGGTGCCATTTGCTCAAAAGTTTCCAAATGCAGATCCTTTAGCGCTGAGGCTACTCGAAAGGTTGCTTGCTTTTGATCCAAAAGATAGGCCAACTGCTGAAGAGGCACTGGCTGATCCATACTTCAAGGGATTGTCAAAAATGGAGAGGGAACCTTCTTGCCCGCCAATCACGAAGATGGAATTTGAATTTGAGAGGCGGAGGGTCACAAAAGATGACATTCAAGAGCTAATTTTCCGCGAGATACTAGAATATCATCCTCAGCTACTAAAAGACTACATGAATGGGACTGAGAGAACAAATTTCCTATACCCAAGTGCCGTTGAACAATTTAGAAAGCAGTTTGCACACCTAGAGGAAAATGAAGGTAAAAGTGCGCCAGTAATCCCTCTTGACAGAAAGCATGTATCTCTACCAAGGTCAACAGTCGTACACTCGAACCCAATCTATTCCAAGGACCAACTAAATAACGTTCCACTCCTAAATGGGAAGATTTCGGAAGAGCGCAAGAATTCCCGAAACGGCGAAGGGCGGGTAACAAATATATTGAGAACCATGCAGGCACCACAAAGGATTCCATACGCTAAGCCTGGAAGAGTGGTTGGACCAGTTATAGTAGATGAAAATGGAAGGCTAGTGAAGGAACCATATGATCCAAGAACGTATATCAGAGGTGCCATTCTTCCTCCTTCATATCACTACCAAAAACCCATCGCTGGACATCAAGAAAGATCGGCAGCAGAAACAAATATTTCTTTGAGGGCCGCCAAACAAGCCTCCCAGTGTGGCATGGTGGCTTCCAAATTAGGAACGGACATAGCCATCAACATTGACTCGAACCCCTTTTACATGACACGTGCCGGAGTAAACACGGTTGAACTCAAGGACCAAATATCCATCGACACAAACTTTCTGCACGCCAAGGCCGTGCAATATGGTGGTCTTGCTGCAGCTACCGTGACCACCACCTCGGTTGCTCACAGAAATGTCGTTGCCAGTCAGCTTAGCATGACAAAGATGTACTAG 1848 42.8 MQQDQPKKNATEAEFFSDYGDASRYKIQEVIGKGSYGVVCSAIDTRSGDKVAIKKIHNIFEHTSDAVRILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTREHYQFFLYQLLRALKYIHTASVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFYSKYTAAIDIWGIGCIFAEVLSGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTTMRKKQPVPFAQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLSKMEREPSCPPITKMEFEFERRRVTKDDIQELIFREILEYHPQLLKDYMNGTERTNFLYPSAVEQFRKQFAHLEENEGKSAPVIPLDRKHVSLPRSTVVHSNPIYSKDQLNNVPLLNGKISEERKNSRNGEGRVTNILRTMQAPQRIPYAKPGRVVGPVIVDENGRLVKEPYDPRTYIRGAILPPSYHYQKPIAGHQERSAAETNISLRAAKQASQCGMVASKLGTDIAINIDSNPFYMTRAGVNTVELKDQISIDTNFLHAKAVQYGGLAAATVTTTSVAHRNVVASQLSMTKMY 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42114259 42120819 - Sed0025038.1 Sed05g3269 715895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3269 615 FunFam Mitogen-activated protein kinase 15 118 - -
Sed05g3269 615 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Sed05g3269 615 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Sed05g3269 615 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524(InterPro)
Sed05g3269 615 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3269 615 FunFam Mitogen-activated protein kinase 111 339 - -
Sed05g3269 615 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3269 615 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3269 615 SMART serkin_6 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3269 615 SUPERFAMILY Protein kinase-like (PK-like) 21 321 IPR011009 -
Sed05g3269 615 CDD STKc_TDY_MAPK 24 361 - -
Sed05g3269 615 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 22 357 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0733 Sed-Chr1:5380466 Sed05g3269 Sed-Chr5:42114259 0.00E+00 dispersed
Sed04g1853 Sed-Chr4:33277392 Sed05g3269 Sed-Chr5:42114259 4.10E-204 dispersed
Sed05g3269 Sed-Chr5:42114259 Sed13g0648 Sed-Chr13:4381399 4.30E-199 dispersed
Sed05g3269 Sed-Chr5:42114259 Sed05g3270 Sed-Chr5:42114259 0.00E+00 tandem
Sed01g0732 Sed-Chr1:5380466 Sed05g3269 Sed-Chr5:42114259 0.00E+00 wgd
Sed05g1874 Sed-Chr5:32155700 Sed05g3269 Sed-Chr5:42114259 4.10E-242 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79278 PF00069 Pkinase 4.90E-66 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3269 - - - 0.0