Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g3277 | ATGGCGTCTGGGAATTCATTGAATGATAATTTATCCAAGAAGACTTCATTTGGGGGATTGTCATTGTGGGTTTTGATCTGCATTTGCATTGGTGCATTTATAGTTTTGATTCTTGGTTTATTATCTATGTGGATTCTGTTTAGAAAGAAATCTAAAAGATCCATGGACAAATTCCCTGTTTCCCAAATACCTAATTTTTCAAAAGTTATCAGGATAGATCAGGTTGGGGCTCAAACTCTTAATGACCACCCTGAAAATAGACTTATTTCAGTTGATGTCAAAAGGAATGATGAAAATTCTGAAGTTATGGCTGTGGCAAAATCAAGTGAACCTGATAGCAATAGCCAAGGCAGTTTCACTTATCAGCACGAAAAGGCGGGAAATTCACATTCTGGGGAAGAAGGAAGCTCTGGATACGCTCGGAAGCAGGCTACAAGATCTTATGGAGGAATGGTGCCGCCGTCTCCTCTTGTTGGCCTGCCAGAAATTTCACATCTCGGGTGGGGCCACTGGTTCACTCTCAGGGATCTAGAGCTTGCAACTAATCGTTTTTCTTCTCAAAATATTCTTGGAGAGGGAGGATATGGGGTTGTATATAAGGGTAGACTCATCAATGGCACTGAGGTTGCAGTAAAAAAACTTCTCAATAATCTGGGTCAGGCAGAGAAAGAGTTTAGAGTTGAAGTGGAAGCTATTGGTCATGTTCGACATAAGAATCTTGTTCGACTACTGGGGTACTGCATAGAAGGAGTTCACAGGATGCTAGTATATGAATACGTGAGCCATGGCAATCTAGAACAATGGCTACATGGAGCTATGTGCCAACACGGTGCGTTTACTTGGGAGGCTCGCATGAAGGTGCTTCTTGGCACTGCGAAGGCGCTTGCGTATTTACATGAAGCAATCGAGCCAAAAGTTGTCCACAGAGATATAAAATCAAGCAACATTTTGATTGATGATGAGTTCAATGCCAAAGTTTCGGATTTTGGACTGGCCAAACTCCTGGACTCTGGGGAGAGTCACATCACAACTAGAGTTATGGGAACATTTGGATATGTGGCACCAGAATATGCAAATACGGGTATGCTGAATGAAAAGAGCGACATTTATAGCTTCGGTGTTCTCTTGCTAGAAGCAATTACAGGGAGGGACCCTGTGGATTATGCCCGTCCTTCTAATGAGGTTAATCTTGTTGAGTGGCTAAAGATGATGGTAGCTACAAGGAGAGCAGAGGAAGTTGTAGACATGAACCTTGAGGTTAAGCCTACTACTCGTGCATTGAAACGCGCACTTCTTGTTGCACTTCGATGTATTGATCCTGAATCAATCAAGAGACCTAAGATGAGTCAAGTTGTAAGGATGCTCGAAACCGAAGAATTTCCACTGCATGAGGATAGAAGGAACCGAAAAAGCCGATCGATAAGCTTGGAGATCGAGTCAATGAAAGAAATATCAGGTCCAGAGGAGACGAGTGGGCCATCCATGAGCCATAAATCAGAGACAAGCCATGGATAG | 1515 | 42.9 | MASGNSLNDNLSKKTSFGGLSLWVLICICIGAFIVLILGLLSMWILFRKKSKRSMDKFPVSQIPNFSKVIRIDQVGAQTLNDHPENRLISVDVKRNDENSEVMAVAKSSEPDSNSQGSFTYQHEKAGNSHSGEEGSSGYARKQATRSYGGMVPPSPLVGLPEISHLGWGHWFTLRDLELATNRFSSQNILGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVSHGNLEQWLHGAMCQHGAFTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGMLNEKSDIYSFGVLLLEAITGRDPVDYARPSNEVNLVEWLKMMVATRRAEEVVDMNLEVKPTTRALKRALLVALRCIDPESIKRPKMSQVVRMLETEEFPLHEDRRNRKSRSISLEIESMKEISGPEETSGPSMSHKSETSHG | 504 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 42172537 | 42178093 | - | Sed0010638.1 | Sed05g3277 | 715903 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g3277 | 504 | ProSitePatterns | Protein kinases ATP-binding region signature. | 190 | 213 | IPR017441 | GO:0005524(InterPro) | |
Sed05g3277 | 504 | ProSiteProfiles | Protein kinase domain profile. | 184 | 448 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g3277 | 504 | Coils | Coil | 204 | 224 | - | - | |
Sed05g3277 | 504 | Pfam | Protein kinase domain | 186 | 453 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g3277 | 504 | MobiDBLite | consensus disorder prediction | 487 | 504 | - | - | |
Sed05g3277 | 504 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 306 | 318 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed05g3277 | 504 | CDD | STKc_IRAK | 190 | 456 | - | - | |
Sed05g3277 | 504 | MobiDBLite | consensus disorder prediction | 463 | 504 | - | - | |
Sed05g3277 | 504 | Gene3D | Phosphorylase Kinase; domain 1 | 166 | 259 | - | - | |
Sed05g3277 | 504 | SUPERFAMILY | Protein kinase-like (PK-like) | 168 | 462 | IPR011009 | - | |
Sed05g3277 | 504 | Gene3D | Transferase(Phosphotransferase) domain 1 | 260 | 473 | - | - | |
Sed05g3277 | 504 | MobiDBLite | consensus disorder prediction | 102 | 143 | - | - | |
Sed05g3277 | 504 | MobiDBLite | consensus disorder prediction | 463 | 477 | - | - | |
Sed05g3277 | 504 | SMART | serkin_6 | 184 | 438 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g3277 | 504 | FunFam | Putative receptor-like protein kinase | 166 | 259 | - | - | |
Sed05g3277 | 504 | MobiDBLite | consensus disorder prediction | 101 | 146 | - | - | |
Sed05g3277 | 504 | FunFam | Putative receptor-like serine/threonine-protein kinase | 260 | 470 | - | - | |
Sed05g3277 | 504 | PANTHER | OS01G0323000 PROTEIN | 6 | 479 | IPR052232 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1861 | Sed-Chr5:32038219 | Sed05g3277 | Sed-Chr5:42172537 | 3.20E-208 | dispersed | |
Sed05g1862 | Sed-Chr5:32038219 | Sed05g3277 | Sed-Chr5:42172537 | 3.20E-208 | dispersed | |
Sed05g3277 | Sed-Chr5:42172537 | Sed09g0596 | Sed-Chr9:6784440 | 8.30E-148 | dispersed | |
Sed11g1370 | Sed-Chr11:29723962 | Sed05g3277 | Sed-Chr5:42172537 | 2.40E-62 | transposed | |
Sed01g0736 | Sed-Chr1:5420644 | Sed05g3277 | Sed-Chr5:42172537 | 7.20E-251 | wgd | |
Sed04g3475 | Sed-Chr4:44396275 | Sed05g3277 | Sed-Chr5:42172537 | 3.80E-209 | wgd | |
Sed05g1860 | Sed-Chr5:32038219 | Sed05g3277 | Sed-Chr5:42172537 | 3.20E-208 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79280 | PF00069 | Pkinase | 5.30E-49 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g3277 | - | - | - | 0.0 |