Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3277 ATGGCGTCTGGGAATTCATTGAATGATAATTTATCCAAGAAGACTTCATTTGGGGGATTGTCATTGTGGGTTTTGATCTGCATTTGCATTGGTGCATTTATAGTTTTGATTCTTGGTTTATTATCTATGTGGATTCTGTTTAGAAAGAAATCTAAAAGATCCATGGACAAATTCCCTGTTTCCCAAATACCTAATTTTTCAAAAGTTATCAGGATAGATCAGGTTGGGGCTCAAACTCTTAATGACCACCCTGAAAATAGACTTATTTCAGTTGATGTCAAAAGGAATGATGAAAATTCTGAAGTTATGGCTGTGGCAAAATCAAGTGAACCTGATAGCAATAGCCAAGGCAGTTTCACTTATCAGCACGAAAAGGCGGGAAATTCACATTCTGGGGAAGAAGGAAGCTCTGGATACGCTCGGAAGCAGGCTACAAGATCTTATGGAGGAATGGTGCCGCCGTCTCCTCTTGTTGGCCTGCCAGAAATTTCACATCTCGGGTGGGGCCACTGGTTCACTCTCAGGGATCTAGAGCTTGCAACTAATCGTTTTTCTTCTCAAAATATTCTTGGAGAGGGAGGATATGGGGTTGTATATAAGGGTAGACTCATCAATGGCACTGAGGTTGCAGTAAAAAAACTTCTCAATAATCTGGGTCAGGCAGAGAAAGAGTTTAGAGTTGAAGTGGAAGCTATTGGTCATGTTCGACATAAGAATCTTGTTCGACTACTGGGGTACTGCATAGAAGGAGTTCACAGGATGCTAGTATATGAATACGTGAGCCATGGCAATCTAGAACAATGGCTACATGGAGCTATGTGCCAACACGGTGCGTTTACTTGGGAGGCTCGCATGAAGGTGCTTCTTGGCACTGCGAAGGCGCTTGCGTATTTACATGAAGCAATCGAGCCAAAAGTTGTCCACAGAGATATAAAATCAAGCAACATTTTGATTGATGATGAGTTCAATGCCAAAGTTTCGGATTTTGGACTGGCCAAACTCCTGGACTCTGGGGAGAGTCACATCACAACTAGAGTTATGGGAACATTTGGATATGTGGCACCAGAATATGCAAATACGGGTATGCTGAATGAAAAGAGCGACATTTATAGCTTCGGTGTTCTCTTGCTAGAAGCAATTACAGGGAGGGACCCTGTGGATTATGCCCGTCCTTCTAATGAGGTTAATCTTGTTGAGTGGCTAAAGATGATGGTAGCTACAAGGAGAGCAGAGGAAGTTGTAGACATGAACCTTGAGGTTAAGCCTACTACTCGTGCATTGAAACGCGCACTTCTTGTTGCACTTCGATGTATTGATCCTGAATCAATCAAGAGACCTAAGATGAGTCAAGTTGTAAGGATGCTCGAAACCGAAGAATTTCCACTGCATGAGGATAGAAGGAACCGAAAAAGCCGATCGATAAGCTTGGAGATCGAGTCAATGAAAGAAATATCAGGTCCAGAGGAGACGAGTGGGCCATCCATGAGCCATAAATCAGAGACAAGCCATGGATAG 1515 42.9 MASGNSLNDNLSKKTSFGGLSLWVLICICIGAFIVLILGLLSMWILFRKKSKRSMDKFPVSQIPNFSKVIRIDQVGAQTLNDHPENRLISVDVKRNDENSEVMAVAKSSEPDSNSQGSFTYQHEKAGNSHSGEEGSSGYARKQATRSYGGMVPPSPLVGLPEISHLGWGHWFTLRDLELATNRFSSQNILGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVSHGNLEQWLHGAMCQHGAFTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGMLNEKSDIYSFGVLLLEAITGRDPVDYARPSNEVNLVEWLKMMVATRRAEEVVDMNLEVKPTTRALKRALLVALRCIDPESIKRPKMSQVVRMLETEEFPLHEDRRNRKSRSISLEIESMKEISGPEETSGPSMSHKSETSHG 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42172537 42178093 - Sed0010638.1 Sed05g3277 715903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3277 504 ProSitePatterns Protein kinases ATP-binding region signature. 190 213 IPR017441 GO:0005524(InterPro)
Sed05g3277 504 ProSiteProfiles Protein kinase domain profile. 184 448 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3277 504 Coils Coil 204 224 - -
Sed05g3277 504 Pfam Protein kinase domain 186 453 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3277 504 MobiDBLite consensus disorder prediction 487 504 - -
Sed05g3277 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 306 318 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g3277 504 CDD STKc_IRAK 190 456 - -
Sed05g3277 504 MobiDBLite consensus disorder prediction 463 504 - -
Sed05g3277 504 Gene3D Phosphorylase Kinase; domain 1 166 259 - -
Sed05g3277 504 SUPERFAMILY Protein kinase-like (PK-like) 168 462 IPR011009 -
Sed05g3277 504 Gene3D Transferase(Phosphotransferase) domain 1 260 473 - -
Sed05g3277 504 MobiDBLite consensus disorder prediction 102 143 - -
Sed05g3277 504 MobiDBLite consensus disorder prediction 463 477 - -
Sed05g3277 504 SMART serkin_6 184 438 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3277 504 FunFam Putative receptor-like protein kinase 166 259 - -
Sed05g3277 504 MobiDBLite consensus disorder prediction 101 146 - -
Sed05g3277 504 FunFam Putative receptor-like serine/threonine-protein kinase 260 470 - -
Sed05g3277 504 PANTHER OS01G0323000 PROTEIN 6 479 IPR052232 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1861 Sed-Chr5:32038219 Sed05g3277 Sed-Chr5:42172537 3.20E-208 dispersed
Sed05g1862 Sed-Chr5:32038219 Sed05g3277 Sed-Chr5:42172537 3.20E-208 dispersed
Sed05g3277 Sed-Chr5:42172537 Sed09g0596 Sed-Chr9:6784440 8.30E-148 dispersed
Sed11g1370 Sed-Chr11:29723962 Sed05g3277 Sed-Chr5:42172537 2.40E-62 transposed
Sed01g0736 Sed-Chr1:5420644 Sed05g3277 Sed-Chr5:42172537 7.20E-251 wgd
Sed04g3475 Sed-Chr4:44396275 Sed05g3277 Sed-Chr5:42172537 3.80E-209 wgd
Sed05g1860 Sed-Chr5:32038219 Sed05g3277 Sed-Chr5:42172537 3.20E-208 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79280 PF00069 Pkinase 5.30E-49 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3277 - - - 0.0