Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3285 ATGCACTCGAGAGACAATAAAGTACTGCCTCAAGGTGAGACGGTTCGGATTCTAGTTGAATTCTTGGAGGTGGCCATTACATCAATCATCTACCTCAAAAGCATTTACCCTTCTGGTGCTTTTGAAAGAAGAAGGTACATGAATGCGGTTGTGCAAAGGGCTCGCCATCCTGAGCTGCAGGATTACATCCACTCAACTGTTTCAGGGCTACTACCTTTCATTCAAAAGGGGCTGGTGGAGAGAGTAGCAGTTATATTTTTCAATGGTGAAAATATTCAAGTGGAGAGATTTGTTTTCAAGCTCATGGTGAACCAGTCTTATGAATCAAAGGTCGAAAATTCCGACCTGGAGTTTGCCTTAAGATCATTCTTGATCAAGCTCTCTGTCTCAGAACCTCTAACCAAGGCTCTTCCGCCCGATTGCAAATGGGAAATAACTGCCTACTTCAAAACCCTCCCAAGTTCAGGTACAAGTAAGGATGCAGAGTTATGGATCCCAACGGATACAAAGCTATGGCAACAACCACCAGTTATCACCCCCATCAAGTCCATGAACAGCCAGCCTCTGAGTTTGCAATTATATCTAGAACATCCTAGCTTATCTGAGCCAAAACCATGTGAATAA 624 43.59 MHSRDNKVLPQGETVRILVEFLEVAITSIIYLKSIYPSGAFERRRYMNAVVQRARHPELQDYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKLMVNQSYESKVENSDLEFALRSFLIKLSVSEPLTKALPPDCKWEITAYFKTLPSSGTSKDAELWIPTDTKLWQQPPVITPIKSMNSQPLSLQLYLEHPSLSEPKPCE 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42222459 42226598 - Sed0013658.1 Sed05g3285 715911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3285 207 ProSiteProfiles HORMA domain profile. 12 195 IPR003511 -
Sed05g3285 207 Gene3D HORMA domain 9 199 IPR036570 -
Sed05g3285 207 FunFam Mitotic spindle assembly checkpoint protein MAD2B 9 202 - -
Sed05g3285 207 PANTHER MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2 14 198 IPR045091 GO:0016035(PANTHER)
Sed05g3285 207 Pfam HORMA domain 18 113 IPR003511 -
Sed05g3285 207 SUPERFAMILY The spindle assembly checkpoint protein mad2 11 195 IPR036570 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3285 K13728 - - csv:101209787 356.681
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3284 Sed-Chr5:42221204 Sed05g3285 Sed-Chr5:42222459 2.00E-84 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1010 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g01809 Cam02g1912 Cec02g1932 Cco02g1976 Clacu02g1894 Cmu02g1839 Cre02g2156 . . . . . . . Cme11g01581 Blo15g00603 . . . . . . . Sed05g3285 . . . . . . . . Bhi10g00977 Tan05g0619 Cmetu11g1548 . . . . . . . . . . . . Csa06g01178 Chy11g01015 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009127 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 34