Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3287 ATGGTGAAGTTCACAGCCGAAGAGCTTCGCAGGATTATGGACTTCAAGCATAACATTCGTAACATGTCTGTTATTGCCCATGTCGATCATGGGAAGTCCACTCTTACGGACTCTCTTGTGGCTGCTGCTGGTATCATTGCTCAGGAGGTTGCGGGTGATGTGCGGATGACCGATACCCGTGCAGATGAGGCAGAAAGGGGTATAACTATTAAATCTACTGGCATCTCCCTCTACTATGAGATGTCTGATGATTCATTGAAAAATTACAAGGGAGAAAGAAATGGAAACGAGTATCTGATCAATCTTATTGATTCACCTGGGCACGTTGATTTCTCATCTGAGGTTACAGCTGCTTTGCGTATTACTGATGGTGCCCTTGTTGTGGTAGATTGTATTGAAGGTGTTTGTGTCCAAACAGAGACTGTGCTCCGTCAGGCTTTGGGAGAGAGGATTAGGCCTGTCTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAACTTCAAGTGGATGGAGAGGAGGCTTACCAAACATTTTCGAGGGTTATAGAGAATGCTAATGTGATTATGGCCACTTATGAGGATCCTCTTCTTGGAGATGTGCAAGTGTACCCCGAGAAAGGAACAGTTGCTTTCTCTGCCGGTTTGCATGGTTGGGCATTTACCTTGACTAACTTTGCCAAGATGTATGCCTCCAAGTTTGGAGTAGATGAGTCAAAGATGATGGAGAGACTTTGGGGTGAGAACTTCTTCGATCCTGCCACCAAGAAGTGGACCACCAAGAACACTGGCTCTGCAACATGCAAGCGTGGGTTTGTTCAGTTCTGCTACGAACCTATCAAGCAGATCATTGCAACTTGCATGAACGACCAGAAAGATAAGCTGTGGCCTATGTTACAGAAGCTTGGAGTTGTCATGAAGTCTGATGAAAAGGAACTGATGAGCAAAGCATTGATGAAGCGAGTCATGCAAACATGGCTCCCGGCAAGCACTGCTCTCTTGGAAATGATGATATTTCATCTTCCATCCCCTTCCACAGCTCAAAGGTACCGTGTTGAGAACTTGTACGAAGGTCCACTAGATGATGCTTATGCTAGTGCCATTAGAAGTTGTGATCCCGAGGGACCTCTTATGCTTTATGTATCCAAGATGATTCCTGCATCAGACAAGGGCAGGTTCTTTGCCTTTGGTCGTGTCTTCTCTGGGAAAGTTTCAACTGGTATGAAAGTTAGAATCATGGGTCCAAACTATGTTCCTGGAGAGAAGAAAGACTTGTACGTGAAGAGTGTCCAGAGAACTGTAATTTGGATGGGAAAGAGACAAGAAACGGTGGAGGATGTGCCTTGTGGTAACACTGTTGCCTTGGTTGGGCTTGATCAATACATCACCAAGAATGCCACCCTGACAAACGAGAAGGAAGTAGATGCTCATCCAATTCGAGCCATGAAGTTTTCTGTGTCCCCTGTTGTCCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTAGTTGAAGGCCTTAAACGTCTGGCGAAGTCCGACCCTATGGTTGTGTGTACCATGGAGGAATCTGGTGAGCACATTGTTGCCGGCGCTGGAGAACTTCACCTTGAGATCTGTCTAAAGGATTTGCAAGACGACTTCATGGGTGGGGCTGAGATCATAAAATCTGATCCTGTCGTGTCTTTCCGTGAAACTGTCCTTGAGAAGTCATGCCGCATTGTGATGAGTAAATCTCCAAACAAACACAATCGTCTGTACATGGAAGCACGGCCCTTGGAAGAAGGACTGGCTGAGGCTATTGACGACGGCCGCATTGGACCACGAGATGATCCAAAAGTTAGGTCCAAGATTTTATCAGAGGAGTTTGGTTGGGATAAAGATCTTGCTAAGAAGATTTGGTGCTTTGGTCCTGAGACTACTGGGCCTAATATGGTAGTTGATATGTGTAAGGGAGTTCAATACCTGAATGAAATCAAGGATTCTGTGGTTGCTGGTTTCCAATGGGCGTCGAAAGAAGGTGCATTGGCTGAAGAAAACATGAGAGGCATCTGTTTTGAAGTTTGTGATGTTGTCCTTCACTCCGATGCCATCCACAGAGGAGGCGGTCAAGTCATTCCAACCGCTAGGAGGGTAATCTATGCTTCTCAGCTGACCGCTAAACCAAGGCTTCTCGAGCCAGTGTACCTGGTGGAGATTCAGGCTCCTGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAACCAGAAGCGTGGACACGTCTTCGAGGAGATGCAGAGGCCTGGTACTCCACTTTACAACATCAAGGCATATCTTCCTGTCGTCGAGTCTTTTGGATTCTCGAGCACGTTGAGAGCTGCAACTTCTGGGCAGGCGTTTCCACAGTGTGTTTTTGACCATTGGGACATGATGTCGTCGGATCCAATGGAGTCTGGCTCGCAGGCTGCTCAACTTGTTGCAGACATCCGCAAAAGGAAGGGTTTGAAGGAACAAATGACTCCATTGTCAGACTTTGAGGACAAGCTGTAA 2532 46.76 MVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMSDDSLKNYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSDEKELMSKALMKRVMQTWLPASTALLEMMIFHLPSPSTAQRYRVENLYEGPLDDAYASAIRSCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKRQETVEDVPCGNTVALVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRIVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHSDAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPMESGSQAAQLVADIRKRKGLKEQMTPLSDFEDKL 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42234621 42238346 - Sed0028170.1 Sed05g3287 715913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3287 843 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 IPR031157 -
Sed05g3287 843 Pfam Elongation Factor G, domain III 487 549 IPR041095 -
Sed05g3287 843 Gene3D - 3 237 IPR027417 -
Sed05g3287 843 CDD EF2 20 230 - -
Sed05g3287 843 Gene3D Elongation Factor G (Translational Gtpase), domain 3 486 563 - -
Sed05g3287 843 CDD EF2_snRNP_III 487 559 - -
Sed05g3287 843 SUPERFAMILY EF-G C-terminal domain-like 727 837 IPR035647 -
Sed05g3287 843 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 4 842 - GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0006414(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER)
Sed05g3287 843 SMART EFG_IV_2 606 722 IPR005517 GO:0005525(InterPro)
Sed05g3287 843 FunFam Translation elongation factor 2 343 484 - -
Sed05g3287 843 CDD aeEF2_snRNP_like_IV 559 731 - -
Sed05g3287 843 Pfam Elongation factor G C-terminus 724 811 IPR000640 -
Sed05g3287 843 SMART EFG_C_a 724 813 IPR000640 -
Sed05g3287 843 Pfam Elongation factor Tu GTP binding domain 18 227 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed05g3287 843 SUPERFAMILY Translation proteins 342 476 IPR009000 -
Sed05g3287 843 SUPERFAMILY Ribosomal protein S5 domain 2-like 562 726 IPR020568 -
Sed05g3287 843 Pfam Elongation factor G, domain IV 610 722 IPR005517 GO:0005525(InterPro)
Sed05g3287 843 Pfam Elongation factor Tu domain 2 394 462 IPR004161 GO:0005525(InterPro)
Sed05g3287 843 Gene3D - 723 843 - -
Sed05g3287 843 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 17 344 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed05g3287 843 Gene3D Translation factors 343 484 - -
Sed05g3287 843 FunFam Translation elongation factor 2 569 722 - -
Sed05g3287 843 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 341 IPR027417 -
Sed05g3287 843 SUPERFAMILY EF-G C-terminal domain-like 484 560 IPR035647 -
Sed05g3287 843 PRINTS GTP-binding elongation factor signature 65 73 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed05g3287 843 PRINTS GTP-binding elongation factor signature 153 162 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed05g3287 843 PRINTS GTP-binding elongation factor signature 101 111 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed05g3287 843 PRINTS GTP-binding elongation factor signature 117 128 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed05g3287 843 PRINTS GTP-binding elongation factor signature 21 34 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed05g3287 843 FunFam Translation elongation factor 2 3 237 - -
Sed05g3287 843 FunFam Translation elongation factor 2 486 563 - -
Sed05g3287 843 FunFam Translation elongation factor 2 723 843 - -
Sed05g3287 843 NCBIfam small GTP-binding protein domain 20 176 IPR005225 GO:0005525(InterPro)
Sed05g3287 843 CDD EF2_II 375 470 - -
Sed05g3287 843 CDD eEF2_snRNP_like_C 727 805 - -
Sed05g3287 843 Gene3D - 569 722 IPR014721 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3256 Sed-Chr5:42056872 Sed05g3287 Sed-Chr5:42234621 0.00E+00 dispersed
Sed05g3257 Sed-Chr5:42056872 Sed05g3287 Sed-Chr5:42234621 0.00E+00 dispersed
Sed05g3287 Sed-Chr5:42234621 Sed08g1552 Sed-Chr8:30614946 4.10E-168 dispersed
Sed05g3287 Sed-Chr5:42234621 Sed05g3258 Sed-Chr5:42063261 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3287 K03234 - cit:102616841 1645.56