Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g3287 | ATGGTGAAGTTCACAGCCGAAGAGCTTCGCAGGATTATGGACTTCAAGCATAACATTCGTAACATGTCTGTTATTGCCCATGTCGATCATGGGAAGTCCACTCTTACGGACTCTCTTGTGGCTGCTGCTGGTATCATTGCTCAGGAGGTTGCGGGTGATGTGCGGATGACCGATACCCGTGCAGATGAGGCAGAAAGGGGTATAACTATTAAATCTACTGGCATCTCCCTCTACTATGAGATGTCTGATGATTCATTGAAAAATTACAAGGGAGAAAGAAATGGAAACGAGTATCTGATCAATCTTATTGATTCACCTGGGCACGTTGATTTCTCATCTGAGGTTACAGCTGCTTTGCGTATTACTGATGGTGCCCTTGTTGTGGTAGATTGTATTGAAGGTGTTTGTGTCCAAACAGAGACTGTGCTCCGTCAGGCTTTGGGAGAGAGGATTAGGCCTGTCTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAACTTCAAGTGGATGGAGAGGAGGCTTACCAAACATTTTCGAGGGTTATAGAGAATGCTAATGTGATTATGGCCACTTATGAGGATCCTCTTCTTGGAGATGTGCAAGTGTACCCCGAGAAAGGAACAGTTGCTTTCTCTGCCGGTTTGCATGGTTGGGCATTTACCTTGACTAACTTTGCCAAGATGTATGCCTCCAAGTTTGGAGTAGATGAGTCAAAGATGATGGAGAGACTTTGGGGTGAGAACTTCTTCGATCCTGCCACCAAGAAGTGGACCACCAAGAACACTGGCTCTGCAACATGCAAGCGTGGGTTTGTTCAGTTCTGCTACGAACCTATCAAGCAGATCATTGCAACTTGCATGAACGACCAGAAAGATAAGCTGTGGCCTATGTTACAGAAGCTTGGAGTTGTCATGAAGTCTGATGAAAAGGAACTGATGAGCAAAGCATTGATGAAGCGAGTCATGCAAACATGGCTCCCGGCAAGCACTGCTCTCTTGGAAATGATGATATTTCATCTTCCATCCCCTTCCACAGCTCAAAGGTACCGTGTTGAGAACTTGTACGAAGGTCCACTAGATGATGCTTATGCTAGTGCCATTAGAAGTTGTGATCCCGAGGGACCTCTTATGCTTTATGTATCCAAGATGATTCCTGCATCAGACAAGGGCAGGTTCTTTGCCTTTGGTCGTGTCTTCTCTGGGAAAGTTTCAACTGGTATGAAAGTTAGAATCATGGGTCCAAACTATGTTCCTGGAGAGAAGAAAGACTTGTACGTGAAGAGTGTCCAGAGAACTGTAATTTGGATGGGAAAGAGACAAGAAACGGTGGAGGATGTGCCTTGTGGTAACACTGTTGCCTTGGTTGGGCTTGATCAATACATCACCAAGAATGCCACCCTGACAAACGAGAAGGAAGTAGATGCTCATCCAATTCGAGCCATGAAGTTTTCTGTGTCCCCTGTTGTCCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTAGTTGAAGGCCTTAAACGTCTGGCGAAGTCCGACCCTATGGTTGTGTGTACCATGGAGGAATCTGGTGAGCACATTGTTGCCGGCGCTGGAGAACTTCACCTTGAGATCTGTCTAAAGGATTTGCAAGACGACTTCATGGGTGGGGCTGAGATCATAAAATCTGATCCTGTCGTGTCTTTCCGTGAAACTGTCCTTGAGAAGTCATGCCGCATTGTGATGAGTAAATCTCCAAACAAACACAATCGTCTGTACATGGAAGCACGGCCCTTGGAAGAAGGACTGGCTGAGGCTATTGACGACGGCCGCATTGGACCACGAGATGATCCAAAAGTTAGGTCCAAGATTTTATCAGAGGAGTTTGGTTGGGATAAAGATCTTGCTAAGAAGATTTGGTGCTTTGGTCCTGAGACTACTGGGCCTAATATGGTAGTTGATATGTGTAAGGGAGTTCAATACCTGAATGAAATCAAGGATTCTGTGGTTGCTGGTTTCCAATGGGCGTCGAAAGAAGGTGCATTGGCTGAAGAAAACATGAGAGGCATCTGTTTTGAAGTTTGTGATGTTGTCCTTCACTCCGATGCCATCCACAGAGGAGGCGGTCAAGTCATTCCAACCGCTAGGAGGGTAATCTATGCTTCTCAGCTGACCGCTAAACCAAGGCTTCTCGAGCCAGTGTACCTGGTGGAGATTCAGGCTCCTGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAACCAGAAGCGTGGACACGTCTTCGAGGAGATGCAGAGGCCTGGTACTCCACTTTACAACATCAAGGCATATCTTCCTGTCGTCGAGTCTTTTGGATTCTCGAGCACGTTGAGAGCTGCAACTTCTGGGCAGGCGTTTCCACAGTGTGTTTTTGACCATTGGGACATGATGTCGTCGGATCCAATGGAGTCTGGCTCGCAGGCTGCTCAACTTGTTGCAGACATCCGCAAAAGGAAGGGTTTGAAGGAACAAATGACTCCATTGTCAGACTTTGAGGACAAGCTGTAA | 2532 | 46.76 | MVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMSDDSLKNYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSDEKELMSKALMKRVMQTWLPASTALLEMMIFHLPSPSTAQRYRVENLYEGPLDDAYASAIRSCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKRQETVEDVPCGNTVALVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRIVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHSDAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPMESGSQAAQLVADIRKRKGLKEQMTPLSDFEDKL | 843 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 42234621 | 42238346 | - | Sed0028170.1 | Sed05g3287 | 715913 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g3287 | 843 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 58 | 73 | IPR031157 | - | |
Sed05g3287 | 843 | Pfam | Elongation Factor G, domain III | 487 | 549 | IPR041095 | - | |
Sed05g3287 | 843 | Gene3D | - | 3 | 237 | IPR027417 | - | |
Sed05g3287 | 843 | CDD | EF2 | 20 | 230 | - | - | |
Sed05g3287 | 843 | Gene3D | Elongation Factor G (Translational Gtpase), domain 3 | 486 | 563 | - | - | |
Sed05g3287 | 843 | CDD | EF2_snRNP_III | 487 | 559 | - | - | |
Sed05g3287 | 843 | SUPERFAMILY | EF-G C-terminal domain-like | 727 | 837 | IPR035647 | - | |
Sed05g3287 | 843 | PANTHER | TRANSLATION ELONGATION FACTOR-RELATED | 4 | 842 | - | GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0006414(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER) | |
Sed05g3287 | 843 | SMART | EFG_IV_2 | 606 | 722 | IPR005517 | GO:0005525(InterPro) | |
Sed05g3287 | 843 | FunFam | Translation elongation factor 2 | 343 | 484 | - | - | |
Sed05g3287 | 843 | CDD | aeEF2_snRNP_like_IV | 559 | 731 | - | - | |
Sed05g3287 | 843 | Pfam | Elongation factor G C-terminus | 724 | 811 | IPR000640 | - | |
Sed05g3287 | 843 | SMART | EFG_C_a | 724 | 813 | IPR000640 | - | |
Sed05g3287 | 843 | Pfam | Elongation factor Tu GTP binding domain | 18 | 227 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed05g3287 | 843 | SUPERFAMILY | Translation proteins | 342 | 476 | IPR009000 | - | |
Sed05g3287 | 843 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 562 | 726 | IPR020568 | - | |
Sed05g3287 | 843 | Pfam | Elongation factor G, domain IV | 610 | 722 | IPR005517 | GO:0005525(InterPro) | |
Sed05g3287 | 843 | Pfam | Elongation factor Tu domain 2 | 394 | 462 | IPR004161 | GO:0005525(InterPro) | |
Sed05g3287 | 843 | Gene3D | - | 723 | 843 | - | - | |
Sed05g3287 | 843 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 17 | 344 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed05g3287 | 843 | Gene3D | Translation factors | 343 | 484 | - | - | |
Sed05g3287 | 843 | FunFam | Translation elongation factor 2 | 569 | 722 | - | - | |
Sed05g3287 | 843 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 4 | 341 | IPR027417 | - | |
Sed05g3287 | 843 | SUPERFAMILY | EF-G C-terminal domain-like | 484 | 560 | IPR035647 | - | |
Sed05g3287 | 843 | PRINTS | GTP-binding elongation factor signature | 65 | 73 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed05g3287 | 843 | PRINTS | GTP-binding elongation factor signature | 153 | 162 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed05g3287 | 843 | PRINTS | GTP-binding elongation factor signature | 101 | 111 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed05g3287 | 843 | PRINTS | GTP-binding elongation factor signature | 117 | 128 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed05g3287 | 843 | PRINTS | GTP-binding elongation factor signature | 21 | 34 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed05g3287 | 843 | FunFam | Translation elongation factor 2 | 3 | 237 | - | - | |
Sed05g3287 | 843 | FunFam | Translation elongation factor 2 | 486 | 563 | - | - | |
Sed05g3287 | 843 | FunFam | Translation elongation factor 2 | 723 | 843 | - | - | |
Sed05g3287 | 843 | NCBIfam | small GTP-binding protein domain | 20 | 176 | IPR005225 | GO:0005525(InterPro) | |
Sed05g3287 | 843 | CDD | EF2_II | 375 | 470 | - | - | |
Sed05g3287 | 843 | CDD | eEF2_snRNP_like_C | 727 | 805 | - | - | |
Sed05g3287 | 843 | Gene3D | - | 569 | 722 | IPR014721 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g3256 | Sed-Chr5:42056872 | Sed05g3287 | Sed-Chr5:42234621 | 0.00E+00 | dispersed | |
Sed05g3257 | Sed-Chr5:42056872 | Sed05g3287 | Sed-Chr5:42234621 | 0.00E+00 | dispersed | |
Sed05g3287 | Sed-Chr5:42234621 | Sed08g1552 | Sed-Chr8:30614946 | 4.10E-168 | dispersed | |
Sed05g3287 | Sed-Chr5:42234621 | Sed05g3258 | Sed-Chr5:42063261 | 0.00E+00 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g3287 | K03234 | - | cit:102616841 | 1645.56 |