Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3295 ATGAAAGAGAGCGGAAGAAAACAAGGCACACTTTCACCATGTGCAGCTTGTAAACTTCTTCGTCGAAGATGTGCTCAAGATTGCGTTTTCGCTCCGTATTTCCCCGCCGACGAGCCTCATAAATTTGCTAGTGTCCATAAAGTCTTTGGAGCTAGTAATGTCAACAAGATGTTACAGGAGCTCCCAGAGCACCAACGAAGCGATGCAGTGAGCTCGATGGTGTATGAAGCGAATGCAAGAGTGCGAGATCCTGTGTACGGTTGTGTTGGAGCTATATCGTCTCTGCAACAACAAATCGATGTCTTGCAAACCCAATTGGCGATTGCACAAGCAGAGGTGATACACATGCGGATGCGCCAATTCCCATCATCCTCCAACCCGACTGCTGGTCATTCACCCGAAACCGTCTCACCCTCGGGTAAGATGAACATTTCAGCGCAAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGATAACATGGGGGAGTCATTGTGGTCGTGCTAG 510 48.24 MKESGRKQGTLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAIAQAEVIHMRMRQFPSSSNPTAGHSPETVSPSGKMNISAQNKSYFSMDMVDHDNMGESLWSC 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42296810 42299445 + Sed0027577.1 Sed05g3295 715921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3295 169 Coils Coil 92 112 - -
Sed05g3295 169 MobiDBLite consensus disorder prediction 121 141 - -
Sed05g3295 169 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Sed05g3295 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 137 - -
Sed05g3295 169 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2946 Sed-Chr4:40984546 Sed05g3295 Sed-Chr5:42296810 5.20E-39 dispersed
Sed05g3295 Sed-Chr5:42296810 Sed07g2592 Sed-Chr7:41488810 1.50E-45 dispersed
Sed01g1931 Sed-Chr1:14379149 Sed05g3295 Sed-Chr5:42296810 1.40E-57 transposed
Sed01g0750 Sed-Chr1:5548781 Sed05g3295 Sed-Chr5:42296810 8.30E-65 wgd
Sed05g1854 Sed-Chr5:31967644 Sed05g3295 Sed-Chr5:42296810 7.20E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38706 PF03195 LOB 1.30E-43 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3295 - - - 0.0