Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g3295 | ATGAAAGAGAGCGGAAGAAAACAAGGCACACTTTCACCATGTGCAGCTTGTAAACTTCTTCGTCGAAGATGTGCTCAAGATTGCGTTTTCGCTCCGTATTTCCCCGCCGACGAGCCTCATAAATTTGCTAGTGTCCATAAAGTCTTTGGAGCTAGTAATGTCAACAAGATGTTACAGGAGCTCCCAGAGCACCAACGAAGCGATGCAGTGAGCTCGATGGTGTATGAAGCGAATGCAAGAGTGCGAGATCCTGTGTACGGTTGTGTTGGAGCTATATCGTCTCTGCAACAACAAATCGATGTCTTGCAAACCCAATTGGCGATTGCACAAGCAGAGGTGATACACATGCGGATGCGCCAATTCCCATCATCCTCCAACCCGACTGCTGGTCATTCACCCGAAACCGTCTCACCCTCGGGTAAGATGAACATTTCAGCGCAAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGATAACATGGGGGAGTCATTGTGGTCGTGCTAG | 510 | 48.24 | MKESGRKQGTLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAIAQAEVIHMRMRQFPSSSNPTAGHSPETVSPSGKMNISAQNKSYFSMDMVDHDNMGESLWSC | 169 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 42296810 | 42299445 | + | Sed0027577.1 | Sed05g3295 | 715921 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g3295 | 169 | Coils | Coil | 92 | 112 | - | - | |
Sed05g3295 | 169 | MobiDBLite | consensus disorder prediction | 121 | 141 | - | - | |
Sed05g3295 | 169 | Pfam | Lateral organ boundaries (LOB) domain | 13 | 110 | IPR004883 | - | |
Sed05g3295 | 169 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 12 | 137 | - | - | |
Sed05g3295 | 169 | ProSiteProfiles | LOB domain profile. | 12 | 113 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g2946 | Sed-Chr4:40984546 | Sed05g3295 | Sed-Chr5:42296810 | 5.20E-39 | dispersed | |
Sed05g3295 | Sed-Chr5:42296810 | Sed07g2592 | Sed-Chr7:41488810 | 1.50E-45 | dispersed | |
Sed01g1931 | Sed-Chr1:14379149 | Sed05g3295 | Sed-Chr5:42296810 | 1.40E-57 | transposed | |
Sed01g0750 | Sed-Chr1:5548781 | Sed05g3295 | Sed-Chr5:42296810 | 8.30E-65 | wgd | |
Sed05g1854 | Sed-Chr5:31967644 | Sed05g3295 | Sed-Chr5:42296810 | 7.20E-50 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38706 | PF03195 | LOB | 1.30E-43 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g3295 | - | - | - | 0.0 |