Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3308 ATGGCATCCTTCTCATCCTCCTTCGCCGGATCTTCCTTTTCCTCTTCTCCGATCGAAGCATCTCGTTCTGAGTTGTCGCCGGCTAATTTCCCGAAGGGGAGATCTTTGACGCTTCAATCTGGTATTTTTGGAAATACTGTTTCGAGTGGGGCGTCTTCGTTTCAGTTAAGGTTGTCTAAAAATCGAACCATACAACCGTTCAAAGCTACGGCCACCGAGGCACCTCCGACGGTTCAAAAAACACCGAGCGGTGGGAAGACCAAGATTGGAATCAATGGTTTCGGACGAATTGGAAGACTTGTCTTACGAATTGCAACCTTGAGGGATGATATTGATGTTGTAGCAGTTAATGATCCATTTGTTGACGCTAAGTACATGGCTTACATGTTCAAATATGATTCTACTCATGGCGTTTTCAATGGAACCATCAAGGTTGTGGACGATTCAACCTTGGAAATCAATGGGAAGCAAATCAAAGTTGTAAGCAAAAGGGACCCTGCTGAGATCACTTGGGGTGATTATGGGGCTGAATATGTTGTTGAATCTTCTGGAGTTTTCACTACAAGAGAGAAGGCTGCAGCACACTTAAAGGGTGGTGCTAAGAAAGTGGTAATCTCAGCTCCATCAGCTGATGCACCTATGTTTGTAGTTGGCGTTAATGAAAAAACTTATAAGCCAACGATGGATGTTGTCTCCAACGCAAGTTGTACTACCAATTGTCTTGCACCTCTTGCAAAGGTCGTTCATGAGGAATTTGGTATTGTTGAAGGTCTAATGACTACAGTGCATGCAACGACAGCAACACAAAAGACTGTCGATGGTCCCTCAATGAAGGATTGGAGAGGAGGCCGTGGTGCTGCACAAAATATAATTCCTAGCTCTACTGGTGCTGCCAAGGCTGTTGGTAAAGTTCTTCCAGAGCTAAATGGTAAGCTAACTGGTATGGCTTTCCGTGTTCCAACACCCAATGTTTCTGTTGTGGACTTAACTTGCCGACTCGAAAAAAGGGCTTCATATGAAGATGTCAAGGCAGCAGTAAAGTATGCATCTGAAGGTCCATTGAGAGGTATTCTTGGATACACCGATGAGGATGTTGTCTCTACTGATTTTCTTGGTGACTCAAGGTCAAGTATATTTGATGCAAAGGCTGGAATAGGTCTCAGTACCTCGTTCGTGAAGCTTGTGACTTGGTACGACAACGAATGGGGATACAGCAACCGAGTCCTGGACCTGATCGAGCACATGGCATTTGTTTCAGCCTTGAACTAA 1269 44.68 MASFSSSFAGSSFSSSPIEASRSELSPANFPKGRSLTLQSGIFGNTVSSGASSFQLRLSKNRTIQPFKATATEAPPTVQKTPSGGKTKIGINGFGRIGRLVLRIATLRDDIDVVAVNDPFVDAKYMAYMFKYDSTHGVFNGTIKVVDDSTLEINGKQIKVVSKRDPAEITWGDYGAEYVVESSGVFTTREKAAAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPTMDVVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKRASYEDVKAAVKYASEGPLRGILGYTDEDVVSTDFLGDSRSSIFDAKAGIGLSTSFVKLVTWYDNEWGYSNRVLDLIEHMAFVSALN 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42442831 42447893 + Sed0009028.1 Sed05g3308 715934

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3308 422 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 235 398 - -
Sed05g3308 422 SMART gp_dh_n_7 87 236 IPR020828 GO:0051287(InterPro)
Sed05g3308 422 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 241 398 IPR020829 GO:0016620(InterPro)
Sed05g3308 422 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 88 410 IPR006424 GO:0006006(InterPro)|GO:0016620(InterPro)|GO:0050661(InterPro)|GO:0051287(InterPro)
Sed05g3308 422 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 314 331 IPR020831 GO:0016620(InterPro)
Sed05g3308 422 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 230 248 IPR020831 GO:0016620(InterPro)
Sed05g3308 422 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 257 273 IPR020831 GO:0016620(InterPro)
Sed05g3308 422 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 354 369 IPR020831 GO:0016620(InterPro)
Sed05g3308 422 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 195 208 IPR020831 GO:0016620(InterPro)
Sed05g3308 422 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 234 241 IPR020830 GO:0016620(InterPro)
Sed05g3308 422 Gene3D - 88 415 - -
Sed05g3308 422 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 88 188 IPR020828 GO:0051287(InterPro)
Sed05g3308 422 FunFam Glyceraldehyde-3-phosphate dehydrogenase 87 246 - -
Sed05g3308 422 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 86 252 IPR036291 -
Sed05g3308 422 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 82 416 IPR020831 GO:0016620(InterPro)
Sed05g3308 422 Gene3D Dihydrodipicolinate Reductase; domain 2 236 402 - -
Sed05g3308 422 FunFam Glyceraldehyde-3-phosphate dehydrogenase 235 400 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3308 K00134 - - csv:101203472 736.487
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1835 Sed-Chr5:31873346 Sed05g3308 Sed-Chr5:42442831 1.20E-147 dispersed
Sed05g1836 Sed-Chr5:31873346 Sed05g3308 Sed-Chr5:42442831 7.80E-154 dispersed
Sed05g3308 Sed-Chr5:42442831 Sed13g2208 Sed-Chr13:26579400 4.70E-88 dispersed
Sed03g0748 Sed-Chr3:4494562 Sed05g3308 Sed-Chr5:42442831 6.10E-139 transposed
Sed08g2455 Sed-Chr8:37504487 Sed05g3308 Sed-Chr5:42442831 9.00E-136 transposed
Sed11g2233 Sed-Chr11:35795840 Sed05g3308 Sed-Chr5:42442831 1.20E-139 transposed
Sed05g1834 Sed-Chr5:31873346 Sed05g3308 Sed-Chr5:42442831 1.10E-187 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1147 Blo04g00463 Blo13g00601 . . . . . . . . . . . . Sed05g1836 Cpe04g00865 Cpe16g00709 Bhi05g01995 Tan02g0029 . Lac12g0041 Hepe02g0014 . . . . . . . . . . . . . . Csa07g01207 . Cme11g01634 . . . . Bpe15g00918 . . . Sed05g3308 . . . . . . Cpe15g00903 Cpe05g01033 Bhi10g00938 Tan05g0584 Cmetu11g0258 . Hepe08g0647 . . . . . . . . . . Csa06g01151 Chy11g01041 Cme01g01504
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002415 1 2 2 0 2 2 3 1 2 2 1 1 3 2 2 3 2 1 4 1 2 1 2 2 2 1 2 4 7 1 61