Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3313 ATGGCGGTGGGTGCAAGAGCAATGGCAACCGCAACAGTTCGATCAGTGGTGCGATCGAGCAGGTTCCGTCTTCAATCTCCATCCTCTTACGTGCTTGCTGCGCAGAAATCTCACTCTCACGCCCTTCTCATCCGTCAGATGAGTTCGGAGGCGCAGAGCATCGCCGCTCGTCTTCACAGTTCTGGATTGTTGCGAAGCCAAGGCCTCATTGGTGGGAAGTGGGTTGATGCTTATGATGGAAAGACCTTTGAGATTCATAATCCAGCAAATGGTGAGGTTATAACCAACGTCCCGCTCATGGGAAAGAGCGAGACCGATGATGCCATTTCTTCAGCTTATGATGCTTTTAAGTCTTGGAGCAAGCTCACAGCTGCTGATCGGAGTAATCGCTTACGTAAATGGTATGACCTCCTAATTGCGCACAAAGAAGAGATTGGACAACTGATAACCTTAGAGCAAGGCAAACCGTTAAAGGAAGCAGTGGGTGAGACTAACTATGGAGCCAGCTTTATTGAATTTTTTTCTGAGGAGGCAAAACGAGTATATGGTGACATAATCTCACCAACTATAGCCGATCGTCGACTTTTTGTTTTGAAGCAGCCAGTTGGCGTTGTTGGTGTTATTACCCCTTGGAACTTTCCGTTGGCTATGATCACAAGGAAGGTTGGACCGGCTCTTGCATGTGGTTGTACGGTGGTCATAAAACCCTCTGAACTGACCCCCTTGACAGCTTTAGCAGCAGCTGAGCTCTCACTTCAAGCTGGAATTCCCCCAGGTGTAGTAAATGTCGTTATGGGAGATGCTCCTGCTATTGGGGATGCTATACTTGCAAGTACTCAGGTAAGAAAAATCACGTTTACTGGTTCAACAGCAGTTGGGAAAAAATTGATGGCAGGAGCTGCTAGGACTGTTAAAAGGGTCTCCTTTGAACTTGGTGGTAATGCACCTTGCATAGTCTTTGATGATGCAGACGTGGATGTTGCAGTAAAAGGAGCCATTGCAGCAAAGTTTCGAAATAGTGGACAGACTTGTGTTTGTGCTAATAGAATTCTTGTTCAAGAAGGTATATACGAGAAATTTTCTAATGCATTCTCAAAAGCTGTGCAAAATCTGCAAGTTGGTGATGGGTTTGGTGAAGGTGTAGCTCAGGGTCCTTTAATTAATGAAGCTGCGGTGCAGAAGGTCGAGAAATTTCTTCGAGATGCCATTACGAAGGGAGCAAAAGTTCTTCTTGGTGGTAAAAGACACAGCCTTGGGATGACATTTTATGAACCTACAGTCGTTACTGACGTGAATAGTGATATGCTATTATCCAGGGAGGAAGTATTTGGTCCCGTGGCACCATTACTGCCATTCAAAACAGAGGAGGAAGCAATTGCTCTCGCTAATGACACCCATGCAGGATTAGCTGCTTACATCTTCACAAATAATATTCAACGTTCATGGAGAGTGACTGAAGCTCTCGAGTATGGAATGGTTGGTATTAATGAAGGCCTAATTTCTACCGAGGTGGCTCCATTTGGTGGCGTTAAACAGTCAGGCCTCGGTCGGGAAGGGTCGAAATATGGGATGGACGAATATCTTGAGCTGAAATATGTTTGTTTGGGGAATATGCACGGCAACTAA 1626 45.63 MAVGARAMATATVRSVVRSSRFRLQSPSSYVLAAQKSHSHALLIRQMSSEAQSIAARLHSSGLLRSQGLIGGKWVDAYDGKTFEIHNPANGEVITNVPLMGKSETDDAISSAYDAFKSWSKLTAADRSNRLRKWYDLLIAHKEEIGQLITLEQGKPLKEAVGETNYGASFIEFFSEEAKRVYGDIISPTIADRRLFVLKQPVGVVGVITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGDAPAIGDAILASTQVRKITFTGSTAVGKKLMAGAARTVKRVSFELGGNAPCIVFDDADVDVAVKGAIAAKFRNSGQTCVCANRILVQEGIYEKFSNAFSKAVQNLQVGDGFGEGVAQGPLINEAAVQKVEKFLRDAITKGAKVLLGGKRHSLGMTFYEPTVVTDVNSDMLLSREEVFGPVAPLLPFKTEEEAIALANDTHAGLAAYIFTNNIQRSWRVTEALEYGMVGINEGLISTEVAPFGGVKQSGLGREGSKYGMDEYLELKYVCLGNMHGN 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42467690 42482795 + Sed0009726.1 Sed05g3313 715939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3313 541 Pfam Aldehyde dehydrogenase family 74 533 IPR015590 GO:0016491(InterPro)
Sed05g3313 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 313 502 IPR016163 GO:0016620(InterPro)
Sed05g3313 541 NCBIfam succinate-semialdehyde dehydrogenase 86 531 IPR010102 GO:0009013(InterPro)|GO:0009450(InterPro)
Sed05g3313 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 80 527 IPR016162 GO:0016491(InterPro)
Sed05g3313 541 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 58 538 IPR050740 GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER)
Sed05g3313 541 SUPERFAMILY ALDH-like 63 537 IPR016161 GO:0016491(InterPro)
Sed05g3313 541 FunFam Succinate-semialdehyde dehydrogenase I 313 502 - -
Sed05g3313 541 CDD ALDH_F5_SSADH_GabD 87 535 - -
Sed05g3313 541 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 309 316 IPR029510 GO:0016491(InterPro)
Sed05g3313 541 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 337 348 IPR016160 GO:0016491(InterPro)
Sed05g3313 541 FunFam Aldehyde dehydrogenase, putative 505 531 - -
Sed05g3313 541 FunFam Succinate-semialdehyde dehydrogenase I 80 323 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3313 K17761 - - csv:101217352 934.095
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3313 Sed-Chr5:42467690 Sed08g0168 Sed-Chr8:923304 1.00E-90 dispersed
Sed05g3313 Sed-Chr5:42467690 Sed12g1865 Sed-Chr12:29840797 4.10E-92 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1169 . . . . . . . . . . . . . . . . Cpe16g00704 . . . . . . . Cla02g01832 Cam02g1941 Cec02g1968 Cco02g2007 Clacu02g1921 Cmu02g1870 Cre02g2183 . . . . . . . Cme11g01643 . . . . . . . . Sed05g3313 . . . . . . . Cpe05g01029 Bhi10g00929 Tan05g0579 Cmetu11g2423 . Hepe08g0653 . . . . . . . . . . Csa06g01146 Chy11g01046 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g1865 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G24503 72.8 9.3e-216 747.3
Sed08g0748 . 1 490 Aldehyde Dehydrogenase Gene Family AT3G24503 72.0 5.8e-210 728.0
Sed03g2695 . 48 532 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 7.7e-162 568.2
Sed12g1882 . 58 542 Aldehyde Dehydrogenase Gene Family AT3G24503 55.3 5.7e-157 552.0
Sed12g1882 . 1 542 Aldehyde Dehydrogenase Gene Family AT3G48000 80.3 6.8e-257 884.0
Sed03g2695 . 1 532 Aldehyde Dehydrogenase Gene Family AT3G48000 76.7 1.6e-250 862.8
Sed12g1865 . 10 503 Aldehyde Dehydrogenase Gene Family AT3G48000 54.7 3.7e-162 569.3
Sed08g0748 . 17 490 Aldehyde Dehydrogenase Gene Family AT3G48000 54.4 2.0e-155 547.0
Sed03g2695 . 1 382 Aldehyde Dehydrogenase Gene Family AT1G23800 76.6 3.3e-171 599.0
Sed12g1882 . 1 386 Aldehyde Dehydrogenase Gene Family AT1G23800 73.3 1.3e-164 577.0
Sed12g1865 . 11 347 Aldehyde Dehydrogenase Gene Family AT1G23800 54.9 7.0e-105 378.6
Sed08g0748 . 17 358 Aldehyde Dehydrogenase Gene Family AT1G23800 54.2 7.0e-105 378.6
Sed06g1004 . 2 486 Aldehyde Dehydrogenase Gene Family AT4G34240 63.4 3.8e-183 639.0
Sed05g2367 . 16 487 Aldehyde Dehydrogenase Gene Family AT4G34240 66.3 8.4e-183 637.9
Sed05g2368 . 16 335 Aldehyde Dehydrogenase Gene Family AT4G34240 65.6 8.6e-119 425.2
Sed05g2367 . 77 487 Aldehyde Dehydrogenase Gene Family AT1G44170 72.7 2.9e-178 622.5
Sed06g1004 . 74 484 Aldehyde Dehydrogenase Gene Family AT1G44170 70.8 8.7e-175 610.9
Sed01g3300 . 68 482 Aldehyde Dehydrogenase Gene Family AT1G44170 51.1 2.6e-118 423.3
Sed07g1685 . 61 475 Aldehyde Dehydrogenase Gene Family AT1G44170 51.6 1.1e-116 417.9
Sed05g2368 . 77 334 Aldehyde Dehydrogenase Gene Family AT1G44170 74.0 1.2e-110 397.9
Sed01g3301 . 68 355 Aldehyde Dehydrogenase Gene Family AT1G44170 52.1 4.3e-81 299.7
Sed07g1685 . 1 477 Aldehyde Dehydrogenase Gene Family AT4G36250 63.3 6.3e-185 644.8
Sed05g1142 . 2 478 Aldehyde Dehydrogenase Gene Family AT4G36250 56.0 5.0e-158 555.4
Sed01g3300 . 12 483 Aldehyde Dehydrogenase Gene Family AT4G36250 55.3 1.9e-157 553.5
Sed05g1143 . 2 353 Aldehyde Dehydrogenase Gene Family AT4G36250 54.5 3.5e-111 399.8
Sed01g3301 . 12 357 Aldehyde Dehydrogenase Gene Family AT4G36250 53.5 1.1e-109 394.8
Sed05g3313 . 37 539 Aldehyde Dehydrogenase Gene Family AT1G79440 76.7 2.3e-233 805.8
Sed06g0796 . 10 502 Aldehyde Dehydrogenase Gene Family AT2G14170 80.8 7.6e-233 804.3
Sed10g0810 . 210 644 Aldehyde Dehydrogenase Gene Family AT2G14170 66.7 2.7e-174 609.8
Sed10g0811 . 210 644 Aldehyde Dehydrogenase Gene Family AT2G14170 66.7 2.7e-174 609.8
Sed10g0812 . 210 644 Aldehyde Dehydrogenase Gene Family AT2G14170 66.7 2.7e-174 609.8
Sed08g0168 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 80.4 2.0e-250 862.4
Sed12g1906 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 79.6 2.9e-246 848.6
Sed08g0169 . 1 474 Aldehyde Dehydrogenase Gene Family AT1G74920 80.6 3.0e-235 812.0
Sed08g0168 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.7 6.4e-257 884.0
Sed12g1906 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.9 5.0e-254 874.4
Sed08g0169 . 1 474 Aldehyde Dehydrogenase Gene Family AT3G48170 81.4 4.6e-239 824.7
Sed08g1569 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.2 2.6e-266 915.2
Sed08g1568 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 90.3 3.4e-266 914.8
Sed11g0187 . 1 438 Aldehyde Dehydrogenase Gene Family AT2G24270 89.5 4.4e-234 808.1
Sed01g1829 . 32 554 Aldehyde Dehydrogenase Gene Family AT5G62530 78.6 6.0e-256 880.9
Sed08g2577 . 17 180 Aldehyde Dehydrogenase Gene Family AT5G62530 74.5 3.0e-66 250.8
Sed08g2576 . 17 180 Aldehyde Dehydrogenase Gene Family AT5G62530 74.5 3.0e-66 250.8
Sed08g2578 . 17 153 Aldehyde Dehydrogenase Gene Family AT5G62530 74.6 4.1e-55 213.8
Sed04g3105 . 1 589 Aldehyde Dehydrogenase Gene Family AT3G66658 75.2 6.8e-274 940.6
Sed04g3106 . 1 516 Aldehyde Dehydrogenase Gene Family AT3G66658 75.0 1.9e-239 826.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004697 3 1 1 3 3 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 3 42