Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3313 ATGGCGGTGGGTGCAAGAGCAATGGCAACCGCAACAGTTCGATCAGTGGTGCGATCGAGCAGGTTCCGTCTTCAATCTCCATCCTCTTACGTGCTTGCTGCGCAGAAATCTCACTCTCACGCCCTTCTCATCCGTCAGATGAGTTCGGAGGCGCAGAGCATCGCCGCTCGTCTTCACAGTTCTGGATTGTTGCGAAGCCAAGGCCTCATTGGTGGGAAGTGGGTTGATGCTTATGATGGAAAGACCTTTGAGATTCATAATCCAGCAAATGGTGAGGTTATAACCAACGTCCCGCTCATGGGAAAGAGCGAGACCGATGATGCCATTTCTTCAGCTTATGATGCTTTTAAGTCTTGGAGCAAGCTCACAGCTGCTGATCGGAGTAATCGCTTACGTAAATGGTATGACCTCCTAATTGCGCACAAAGAAGAGATTGGACAACTGATAACCTTAGAGCAAGGCAAACCGTTAAAGGAAGCAGTGGGTGAGACTAACTATGGAGCCAGCTTTATTGAATTTTTTTCTGAGGAGGCAAAACGAGTATATGGTGACATAATCTCACCAACTATAGCCGATCGTCGACTTTTTGTTTTGAAGCAGCCAGTTGGCGTTGTTGGTGTTATTACCCCTTGGAACTTTCCGTTGGCTATGATCACAAGGAAGGTTGGACCGGCTCTTGCATGTGGTTGTACGGTGGTCATAAAACCCTCTGAACTGACCCCCTTGACAGCTTTAGCAGCAGCTGAGCTCTCACTTCAAGCTGGAATTCCCCCAGGTGTAGTAAATGTCGTTATGGGAGATGCTCCTGCTATTGGGGATGCTATACTTGCAAGTACTCAGGTAAGAAAAATCACGTTTACTGGTTCAACAGCAGTTGGGAAAAAATTGATGGCAGGAGCTGCTAGGACTGTTAAAAGGGTCTCCTTTGAACTTGGTGGTAATGCACCTTGCATAGTCTTTGATGATGCAGACGTGGATGTTGCAGTAAAAGGAGCCATTGCAGCAAAGTTTCGAAATAGTGGACAGACTTGTGTTTGTGCTAATAGAATTCTTGTTCAAGAAGGTATATACGAGAAATTTTCTAATGCATTCTCAAAAGCTGTGCAAAATCTGCAAGTTGGTGATGGGTTTGGTGAAGGTGTAGCTCAGGGTCCTTTAATTAATGAAGCTGCGGTGCAGAAGGTCGAGAAATTTCTTCGAGATGCCATTACGAAGGGAGCAAAAGTTCTTCTTGGTGGTAAAAGACACAGCCTTGGGATGACATTTTATGAACCTACAGTCGTTACTGACGTGAATAGTGATATGCTATTATCCAGGGAGGAAGTATTTGGTCCCGTGGCACCATTACTGCCATTCAAAACAGAGGAGGAAGCAATTGCTCTCGCTAATGACACCCATGCAGGATTAGCTGCTTACATCTTCACAAATAATATTCAACGTTCATGGAGAGTGACTGAAGCTCTCGAGTATGGAATGGTTGGTATTAATGAAGGCCTAATTTCTACCGAGGTGGCTCCATTTGGTGGCGTTAAACAGTCAGGCCTCGGTCGGGAAGGGTCGAAATATGGGATGGACGAATATCTTGAGCTGAAATATGTTTGTTTGGGGAATATGCACGGCAACTAA 1626 45.63 MAVGARAMATATVRSVVRSSRFRLQSPSSYVLAAQKSHSHALLIRQMSSEAQSIAARLHSSGLLRSQGLIGGKWVDAYDGKTFEIHNPANGEVITNVPLMGKSETDDAISSAYDAFKSWSKLTAADRSNRLRKWYDLLIAHKEEIGQLITLEQGKPLKEAVGETNYGASFIEFFSEEAKRVYGDIISPTIADRRLFVLKQPVGVVGVITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGDAPAIGDAILASTQVRKITFTGSTAVGKKLMAGAARTVKRVSFELGGNAPCIVFDDADVDVAVKGAIAAKFRNSGQTCVCANRILVQEGIYEKFSNAFSKAVQNLQVGDGFGEGVAQGPLINEAAVQKVEKFLRDAITKGAKVLLGGKRHSLGMTFYEPTVVTDVNSDMLLSREEVFGPVAPLLPFKTEEEAIALANDTHAGLAAYIFTNNIQRSWRVTEALEYGMVGINEGLISTEVAPFGGVKQSGLGREGSKYGMDEYLELKYVCLGNMHGN 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42467690 42482795 + Sed0009726.1 Sed05g3313 715939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3313 541 Pfam Aldehyde dehydrogenase family 74 533 IPR015590 GO:0016491(InterPro)
Sed05g3313 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 313 502 IPR016163 GO:0016620(InterPro)
Sed05g3313 541 NCBIfam succinate-semialdehyde dehydrogenase 86 531 IPR010102 GO:0009013(InterPro)|GO:0009450(InterPro)
Sed05g3313 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 80 527 IPR016162 GO:0016491(InterPro)
Sed05g3313 541 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 58 538 IPR050740 GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER)
Sed05g3313 541 SUPERFAMILY ALDH-like 63 537 IPR016161 GO:0016491(InterPro)
Sed05g3313 541 FunFam Succinate-semialdehyde dehydrogenase I 313 502 - -
Sed05g3313 541 CDD ALDH_F5_SSADH_GabD 87 535 - -
Sed05g3313 541 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 309 316 IPR029510 GO:0016491(InterPro)
Sed05g3313 541 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 337 348 IPR016160 GO:0016491(InterPro)
Sed05g3313 541 FunFam Aldehyde dehydrogenase, putative 505 531 - -
Sed05g3313 541 FunFam Succinate-semialdehyde dehydrogenase I 80 323 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3313 Sed-Chr5:42467690 Sed08g0168 Sed-Chr8:923304 1.00E-90 dispersed
Sed05g3313 Sed-Chr5:42467690 Sed12g1865 Sed-Chr12:29840797 4.10E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3313 K17761 - csv:101217352 934.095