Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g3313 | ATGGCGGTGGGTGCAAGAGCAATGGCAACCGCAACAGTTCGATCAGTGGTGCGATCGAGCAGGTTCCGTCTTCAATCTCCATCCTCTTACGTGCTTGCTGCGCAGAAATCTCACTCTCACGCCCTTCTCATCCGTCAGATGAGTTCGGAGGCGCAGAGCATCGCCGCTCGTCTTCACAGTTCTGGATTGTTGCGAAGCCAAGGCCTCATTGGTGGGAAGTGGGTTGATGCTTATGATGGAAAGACCTTTGAGATTCATAATCCAGCAAATGGTGAGGTTATAACCAACGTCCCGCTCATGGGAAAGAGCGAGACCGATGATGCCATTTCTTCAGCTTATGATGCTTTTAAGTCTTGGAGCAAGCTCACAGCTGCTGATCGGAGTAATCGCTTACGTAAATGGTATGACCTCCTAATTGCGCACAAAGAAGAGATTGGACAACTGATAACCTTAGAGCAAGGCAAACCGTTAAAGGAAGCAGTGGGTGAGACTAACTATGGAGCCAGCTTTATTGAATTTTTTTCTGAGGAGGCAAAACGAGTATATGGTGACATAATCTCACCAACTATAGCCGATCGTCGACTTTTTGTTTTGAAGCAGCCAGTTGGCGTTGTTGGTGTTATTACCCCTTGGAACTTTCCGTTGGCTATGATCACAAGGAAGGTTGGACCGGCTCTTGCATGTGGTTGTACGGTGGTCATAAAACCCTCTGAACTGACCCCCTTGACAGCTTTAGCAGCAGCTGAGCTCTCACTTCAAGCTGGAATTCCCCCAGGTGTAGTAAATGTCGTTATGGGAGATGCTCCTGCTATTGGGGATGCTATACTTGCAAGTACTCAGGTAAGAAAAATCACGTTTACTGGTTCAACAGCAGTTGGGAAAAAATTGATGGCAGGAGCTGCTAGGACTGTTAAAAGGGTCTCCTTTGAACTTGGTGGTAATGCACCTTGCATAGTCTTTGATGATGCAGACGTGGATGTTGCAGTAAAAGGAGCCATTGCAGCAAAGTTTCGAAATAGTGGACAGACTTGTGTTTGTGCTAATAGAATTCTTGTTCAAGAAGGTATATACGAGAAATTTTCTAATGCATTCTCAAAAGCTGTGCAAAATCTGCAAGTTGGTGATGGGTTTGGTGAAGGTGTAGCTCAGGGTCCTTTAATTAATGAAGCTGCGGTGCAGAAGGTCGAGAAATTTCTTCGAGATGCCATTACGAAGGGAGCAAAAGTTCTTCTTGGTGGTAAAAGACACAGCCTTGGGATGACATTTTATGAACCTACAGTCGTTACTGACGTGAATAGTGATATGCTATTATCCAGGGAGGAAGTATTTGGTCCCGTGGCACCATTACTGCCATTCAAAACAGAGGAGGAAGCAATTGCTCTCGCTAATGACACCCATGCAGGATTAGCTGCTTACATCTTCACAAATAATATTCAACGTTCATGGAGAGTGACTGAAGCTCTCGAGTATGGAATGGTTGGTATTAATGAAGGCCTAATTTCTACCGAGGTGGCTCCATTTGGTGGCGTTAAACAGTCAGGCCTCGGTCGGGAAGGGTCGAAATATGGGATGGACGAATATCTTGAGCTGAAATATGTTTGTTTGGGGAATATGCACGGCAACTAA | 1626 | 45.63 | MAVGARAMATATVRSVVRSSRFRLQSPSSYVLAAQKSHSHALLIRQMSSEAQSIAARLHSSGLLRSQGLIGGKWVDAYDGKTFEIHNPANGEVITNVPLMGKSETDDAISSAYDAFKSWSKLTAADRSNRLRKWYDLLIAHKEEIGQLITLEQGKPLKEAVGETNYGASFIEFFSEEAKRVYGDIISPTIADRRLFVLKQPVGVVGVITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGDAPAIGDAILASTQVRKITFTGSTAVGKKLMAGAARTVKRVSFELGGNAPCIVFDDADVDVAVKGAIAAKFRNSGQTCVCANRILVQEGIYEKFSNAFSKAVQNLQVGDGFGEGVAQGPLINEAAVQKVEKFLRDAITKGAKVLLGGKRHSLGMTFYEPTVVTDVNSDMLLSREEVFGPVAPLLPFKTEEEAIALANDTHAGLAAYIFTNNIQRSWRVTEALEYGMVGINEGLISTEVAPFGGVKQSGLGREGSKYGMDEYLELKYVCLGNMHGN | 541 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 42467690 | 42482795 | + | Sed0009726.1 | Sed05g3313 | 715939 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g3313 | 541 | Pfam | Aldehyde dehydrogenase family | 74 | 533 | IPR015590 | GO:0016491(InterPro) | |
Sed05g3313 | 541 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 313 | 502 | IPR016163 | GO:0016620(InterPro) | |
Sed05g3313 | 541 | NCBIfam | succinate-semialdehyde dehydrogenase | 86 | 531 | IPR010102 | GO:0009013(InterPro)|GO:0009450(InterPro) | |
Sed05g3313 | 541 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 80 | 527 | IPR016162 | GO:0016491(InterPro) | |
Sed05g3313 | 541 | PANTHER | SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL | 58 | 538 | IPR050740 | GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER) | |
Sed05g3313 | 541 | SUPERFAMILY | ALDH-like | 63 | 537 | IPR016161 | GO:0016491(InterPro) | |
Sed05g3313 | 541 | FunFam | Succinate-semialdehyde dehydrogenase I | 313 | 502 | - | - | |
Sed05g3313 | 541 | CDD | ALDH_F5_SSADH_GabD | 87 | 535 | - | - | |
Sed05g3313 | 541 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 309 | 316 | IPR029510 | GO:0016491(InterPro) | |
Sed05g3313 | 541 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 337 | 348 | IPR016160 | GO:0016491(InterPro) | |
Sed05g3313 | 541 | FunFam | Aldehyde dehydrogenase, putative | 505 | 531 | - | - | |
Sed05g3313 | 541 | FunFam | Succinate-semialdehyde dehydrogenase I | 80 | 323 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g3313 | Sed-Chr5:42467690 | Sed08g0168 | Sed-Chr8:923304 | 1.00E-90 | dispersed | |
Sed05g3313 | Sed-Chr5:42467690 | Sed12g1865 | Sed-Chr12:29840797 | 4.10E-92 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g3313 | K17761 | - | csv:101217352 | 934.095 |